Wall clock time and date at job start Tue Mar 31 2020 14:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47072 * 269.99869 * 3 2 1 5 5 H 1.48496 * 109.47073 * 29.99823 * 3 2 1 6 6 H 1.48498 * 109.47190 * 149.99991 * 3 2 1 7 7 C 1.37878 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00071 * 359.72490 * 7 2 1 10 10 H 1.08999 * 109.49580 * 60.34181 * 9 7 2 11 11 C 1.53039 * 109.49808 * 180.43927 * 9 7 2 12 12 C 1.53032 * 109.53781 * 181.31644 * 11 9 7 13 13 C 1.53194 * 109.31458 * 298.63465 * 12 11 9 14 14 N 1.46924 * 108.77283 * 54.63274 * 13 12 11 15 15 C 1.34782 * 120.62522 * 126.41711 * 14 13 12 16 16 S 1.71202 * 119.99648 * 175.01228 * 15 14 13 17 17 N 1.34778 * 120.00250 * 355.01135 * 15 14 13 18 18 C 1.39881 * 119.99694 * 79.25236 * 17 15 14 19 19 C 1.38918 * 120.06098 * 185.05490 * 18 17 15 20 20 C 1.38096 * 119.95253 * 179.97438 * 19 18 17 21 21 C 1.38286 * 120.08662 * 359.97438 * 20 19 18 22 22 C 1.38384 * 120.13040 * 0.02642 * 21 20 19 23 23 Cl 1.73597 * 119.97809 * 179.97438 * 22 21 20 24 24 C 1.38250 * 120.04253 * 359.73879 * 22 21 20 25 25 C 1.46920 * 118.74026 * 306.39240 * 14 13 12 26 26 H 0.97000 * 120.00067 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.45835 * 301.33521 * 11 9 7 28 28 H 1.08999 * 109.46300 * 61.29249 * 11 9 7 29 29 H 1.08998 * 109.49927 * 178.68026 * 12 11 9 30 30 H 1.09002 * 109.50086 * 58.58773 * 12 11 9 31 31 H 1.09002 * 109.58408 * 294.84837 * 13 12 11 32 32 H 1.09003 * 109.59030 * 174.42465 * 13 12 11 33 33 H 0.96994 * 119.99983 * 259.25251 * 17 15 14 34 34 H 1.07999 * 120.02131 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.95745 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.93828 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.04361 * 180.27181 * 24 22 21 38 38 H 1.08995 * 109.58880 * 293.82010 * 25 14 13 39 39 H 1.08999 * 109.70230 * 173.46697 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0074 10 1 0.6251 -2.5626 -0.8827 11 6 2.2449 -3.6628 0.0176 12 6 1.4811 -4.9886 -0.0085 13 6 0.6026 -5.0921 1.2423 14 7 -0.2561 -3.9022 1.3167 15 6 -1.5927 -4.0266 1.4368 16 16 -2.5661 -2.6345 1.6505 17 7 -2.1631 -5.2468 1.3885 18 6 -2.1402 -6.0745 2.5159 19 6 -2.6335 -7.3708 2.4376 20 6 -2.6093 -8.1862 3.5518 21 6 -2.0941 -7.7143 4.7452 22 6 -1.6018 -6.4236 4.8272 23 17 -0.9567 -5.8349 6.3275 24 6 -1.6190 -5.6042 3.7138 25 6 0.3700 -2.5744 1.2584 26 1 -0.4850 0.8400 0.0004 27 1 2.8893 -3.5977 -0.8591 28 1 2.8539 -3.6124 0.9202 29 1 2.1898 -5.8166 -0.0249 30 1 0.8530 -5.0292 -0.8985 31 1 1.2343 -5.1429 2.1291 32 1 -0.0170 -5.9867 1.1807 33 1 -2.5894 -5.5509 0.5721 34 1 -3.0349 -7.7408 1.5057 35 1 -2.9924 -9.1941 3.4909 36 1 -2.0760 -8.3542 5.6150 37 1 -1.2308 -4.5984 3.7766 38 1 0.9826 -2.4199 2.1466 39 1 -0.4016 -1.8062 1.2086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849272285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:36 Heat of formation + Delta-G solvation = 29.901243 kcal Electronic energy + Delta-G solvation = -23043.406078 eV Core-core repulsion = 19716.385379 eV Total energy + Delta-G solvation = -3327.020699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67021 -40.02948 -37.97036 -37.14880 -35.21505 -34.07393 -31.85469 -31.77501 -30.76388 -27.26817 -27.12614 -24.35690 -23.98648 -23.58887 -22.29008 -20.79565 -19.27573 -18.96204 -18.60585 -18.13201 -17.10663 -16.57159 -16.10100 -15.87184 -15.63766 -15.40787 -15.26055 -14.78921 -14.68117 -14.59634 -14.42932 -13.74427 -13.36812 -12.93460 -12.90241 -12.83472 -12.53736 -12.47354 -12.41355 -12.26387 -12.15354 -11.98815 -11.94376 -11.45440 -11.23770 -11.05238 -11.00344 -10.51888 -9.87434 -9.05527 -9.00158 -8.47876 -8.09565 -6.28150 -0.35872 0.15175 0.30172 0.83328 1.10426 1.40980 1.43806 1.52814 1.81648 2.20406 2.42349 2.68264 3.17865 3.74112 3.77143 3.86459 3.94995 4.11021 4.13204 4.30685 4.35803 4.42045 4.50734 4.56972 4.59068 4.68061 4.91027 4.94724 5.07799 5.10512 5.18939 5.25545 5.33360 5.38715 5.45159 5.58294 5.72393 5.79680 5.95791 6.09502 6.23240 6.28064 6.81588 7.42263 8.91147 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003799 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.747820 B = 7367.681987 C = 7515.752633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.048 3.952 10 H -0.004 1.004 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.079 3.921 14 N -0.492 5.492 15 C 0.588 3.412 16 S -0.703 6.703 17 N -0.682 5.682 18 C 0.197 3.803 19 C -0.153 4.153 20 C -0.053 4.053 21 C -0.147 4.147 22 C -0.004 4.004 23 Cl -0.078 7.078 24 C -0.190 4.190 25 C 0.083 3.917 26 H 0.261 0.739 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.437 0.563 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.155 0.845 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 -23.232 5.717 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.028 3.972 10 H 0.014 0.986 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.045 4.045 14 N -0.186 5.186 15 C 0.232 3.768 16 S -0.570 6.570 17 N -0.321 5.321 18 C 0.097 3.903 19 C -0.175 4.175 20 C -0.071 4.071 21 C -0.167 4.167 22 C -0.031 4.031 23 Cl -0.049 7.049 24 C -0.213 4.213 25 C -0.039 4.039 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.282 0.718 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.172 0.828 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.230 -22.027 5.982 22.858 hybrid contribution 0.629 1.279 -0.243 1.446 sum -0.601 -20.748 5.739 21.535 Atomic orbital electron populations 1.70034 1.06880 1.27401 1.48843 1.25809 0.95537 1.02519 0.94475 0.85671 0.78833 0.79709 0.78174 1.20142 1.21678 1.18809 1.21356 0.93253 0.90960 1.52421 0.91830 1.18862 0.92669 0.94267 0.91388 0.98603 1.21619 0.97951 0.93671 1.01727 1.21903 0.98846 0.99046 0.96008 1.22558 0.94034 0.86883 1.01031 1.49317 1.04793 1.11886 1.52611 1.21606 0.85076 0.89644 0.80500 1.93582 1.61853 1.33242 1.68325 1.41631 1.61840 1.12956 1.15654 1.17762 0.96870 0.90738 0.84963 1.21112 1.03989 0.90262 1.02167 1.21342 0.94993 1.00871 0.89898 1.21274 1.01457 0.93160 1.00852 1.20736 1.00604 0.95276 0.86488 1.98376 1.85087 1.89039 1.32382 1.20468 1.08307 0.99898 0.92634 1.23080 0.99789 0.81446 0.99565 0.93000 0.91923 0.92251 0.86842 0.92050 0.88857 0.87067 0.71843 0.81779 0.80469 0.82766 0.88664 0.92860 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.58 11.38 21.45 0.24 -52.34 16 2 C 0.02 1.00 5.30 84.66 0.45 1.45 16 3 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -28.32 8.57 25.60 0.22 -28.10 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.05 2.22 2.25 -11.46 -0.03 2.19 16 10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 11 C -0.11 -3.87 5.11 30.62 0.16 -3.71 16 12 C -0.12 -3.03 6.08 30.67 0.19 -2.84 16 13 C 0.08 2.03 6.06 86.36 0.52 2.56 16 14 N -0.49 -17.80 2.97 -706.92 -2.10 -19.90 16 15 C 0.59 21.80 5.40 179.05 0.97 22.76 16 16 S -0.70 -34.94 28.68 -56.49 -1.62 -36.56 16 17 N -0.68 -17.90 4.28 -189.99 -0.81 -18.71 16 18 C 0.20 4.45 5.36 38.16 0.20 4.65 16 19 C -0.15 -2.14 9.90 22.40 0.22 -1.92 16 20 C -0.05 -0.58 10.04 22.25 0.22 -0.36 16 21 C -0.15 -2.26 9.83 22.32 0.22 -2.04 16 22 C 0.00 -0.09 6.32 22.31 0.14 0.05 16 23 Cl -0.08 -1.85 28.95 -2.72 -0.08 -1.93 16 24 C -0.19 -5.15 8.92 22.42 0.20 -4.95 16 25 C 0.08 3.86 5.26 86.36 0.45 4.31 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.11 2.26 6.07 -2.39 -0.01 2.25 16 33 H 0.44 9.10 8.82 -92.71 -0.82 8.29 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.10 3.32 7.02 -2.91 -0.02 3.30 16 38 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.13 7.34 4.11 -3.22 -0.01 7.33 16 Total: -1.00 -72.89 344.73 2.05 -70.84 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.26 Total: 19.08 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.14 Total: -5.93 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -2.67 Total: -90.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -34.94 SS G_CDS: -1.62 Total: -36.56 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -72.89 2.05 -70.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.740 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds