Wall clock time and date at job start Tue Mar 31 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47292 * 274.65708 * 3 2 1 5 5 H 1.48500 * 109.47268 * 34.65932 * 3 2 1 6 6 H 1.48500 * 109.47285 * 154.65722 * 3 2 1 7 7 C 1.37875 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00007 * 5.33692 * 7 2 1 9 9 C 1.50699 * 120.00005 * 185.34496 * 7 2 1 10 10 H 1.08997 * 109.52275 * 325.85783 * 9 7 2 11 11 C 1.53043 * 109.49287 * 205.78095 * 9 7 2 12 12 C 1.53043 * 109.53531 * 178.67709 * 11 9 7 13 13 C 1.53195 * 109.30983 * 61.36925 * 12 11 9 14 14 N 1.46931 * 108.77090 * 305.36057 * 13 12 11 15 15 C 1.34775 * 120.62933 * 233.58395 * 14 13 12 16 16 S 1.71204 * 119.99923 * 185.50971 * 15 14 13 17 17 N 1.34778 * 120.00122 * 5.50997 * 15 14 13 18 18 C 1.39895 * 119.99924 * 185.92871 * 17 15 14 19 19 C 1.38906 * 120.06452 * 40.97693 * 18 17 15 20 20 C 1.38095 * 119.95414 * 180.23032 * 19 18 17 21 21 C 1.38285 * 120.08476 * 359.79385 * 20 19 18 22 22 C 1.38389 * 120.12749 * 359.94920 * 21 20 19 23 23 Cl 1.73596 * 119.97609 * 180.02562 * 22 21 20 24 24 C 1.38246 * 120.04452 * 0.02728 * 22 21 20 25 25 C 1.46923 * 118.74064 * 53.86517 * 14 13 12 26 26 H 0.96997 * 119.99221 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46381 * 58.66647 * 11 9 7 28 28 H 1.08994 * 109.45047 * 298.69240 * 11 9 7 29 29 H 1.08999 * 109.50100 * 301.41554 * 12 11 9 30 30 H 1.09004 * 109.49782 * 181.31278 * 12 11 9 31 31 H 1.08998 * 109.58776 * 185.58129 * 13 12 11 32 32 H 1.08991 * 109.70737 * 65.21756 * 13 12 11 33 33 H 0.97000 * 119.99941 * 5.93208 * 17 15 14 34 34 H 1.08000 * 120.02707 * 359.97016 * 19 18 17 35 35 H 1.08004 * 119.96092 * 179.76410 * 20 19 18 36 36 H 1.07999 * 119.93432 * 179.97438 * 21 20 19 37 37 H 1.07994 * 120.03771 * 179.97438 * 24 22 21 38 38 H 1.09003 * 109.58653 * 65.92171 * 25 14 13 39 39 H 1.08993 * 109.58804 * 186.34491 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3983 2.1032 -1.3954 5 1 1.4994 2.6222 0.7962 6 1 3.5925 1.4137 0.5993 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1274 -0.0860 9 6 3.5067 -1.1969 0.1221 10 1 3.9147 -0.3216 -0.3834 11 6 4.0687 -2.4666 -0.5214 12 6 5.5962 -2.4547 -0.4277 13 6 6.0133 -2.4344 1.0462 14 7 5.3593 -1.2965 1.7069 15 6 6.0843 -0.3936 2.3965 16 16 5.2956 0.8450 3.2769 17 7 7.4301 -0.4656 2.3930 18 6 8.1786 0.3925 3.2057 19 6 7.7580 0.6673 4.5007 20 6 8.4961 1.5184 5.2994 21 6 9.6556 2.0940 4.8131 22 6 10.0807 1.8184 3.5253 23 17 11.5372 2.5425 2.9190 24 6 9.3462 0.9667 2.7213 25 6 3.8994 -1.1653 1.6069 26 1 -0.4849 0.8401 -0.0004 27 1 3.7695 -2.5060 -1.5688 28 1 3.6797 -3.3408 0.0006 29 1 5.9846 -1.5676 -0.9280 30 1 5.9971 -3.3480 -0.9068 31 1 7.0954 -2.3260 1.1183 32 1 5.7060 -3.3625 1.5280 33 1 7.8797 -1.1124 1.8269 34 1 6.8521 0.2191 4.8813 35 1 8.1671 1.7352 6.3050 36 1 10.2307 2.7596 5.4397 37 1 9.6778 0.7520 1.7162 38 1 3.4213 -1.9923 2.1318 39 1 3.5864 -0.2195 2.0491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849272286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:39 Heat of formation + Delta-G solvation = 43.991173 kcal Electronic energy + Delta-G solvation = -22670.332394 eV Core-core repulsion = 19343.922680 eV Total energy + Delta-G solvation = -3326.409714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48567 -39.16732 -37.03950 -36.16537 -33.67247 -32.60219 -31.00506 -30.88266 -29.60600 -26.22214 -25.36752 -23.38708 -22.68466 -22.57957 -21.02973 -19.54808 -18.58381 -18.01585 -16.94807 -16.46056 -15.93887 -15.60292 -14.89664 -14.60642 -14.42673 -14.25690 -14.09795 -13.84735 -13.62307 -13.38088 -12.84809 -12.58297 -12.45674 -12.05598 -11.66690 -11.60154 -11.59456 -11.21893 -11.12954 -10.90233 -10.80067 -10.70819 -10.37843 -9.81559 -9.62774 -9.47705 -9.28744 -8.99759 -8.61649 -8.32653 -7.45494 -6.81298 -6.18131 -4.22128 0.84791 1.10011 1.63651 1.89542 2.11735 2.74844 3.18522 3.32961 3.46982 3.53287 3.58401 4.41443 4.56234 4.62663 4.85458 4.88787 4.99802 5.04051 5.15387 5.19169 5.27873 5.47329 5.51923 5.61530 5.82894 5.86783 5.96410 6.07201 6.08965 6.14880 6.31651 6.36091 6.44507 6.46739 6.63252 6.75614 6.93777 7.06655 7.19654 7.33224 7.61007 8.37185 8.84590 9.43804 10.92813 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.003609 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.423533 B = 7756.666219 C = 8284.718379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.862 3.138 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.010 3.990 10 H 0.037 0.963 11 C -0.107 4.107 12 C -0.136 4.136 13 C 0.093 3.907 14 N -0.544 5.544 15 C 0.553 3.447 16 S -0.634 6.634 17 N -0.648 5.648 18 C 0.156 3.844 19 C -0.068 4.068 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.030 4.030 23 Cl -0.075 7.075 24 C -0.125 4.125 25 C 0.095 3.905 26 H 0.267 0.733 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.404 0.596 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.003 -3.103 5.750 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.123 4.123 3 Si 0.689 3.311 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.558 4.558 8 H 0.094 0.906 9 C -0.010 4.010 10 H 0.055 0.945 11 C -0.145 4.145 12 C -0.175 4.175 13 C -0.032 4.032 14 N -0.248 5.248 15 C 0.196 3.804 16 S -0.500 6.500 17 N -0.278 5.278 18 C 0.062 3.938 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.058 4.058 23 Cl -0.046 7.046 24 C -0.147 4.147 25 C -0.025 4.025 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.245 0.755 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.094 0.906 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.271 -2.236 6.178 22.263 hybrid contribution 1.064 0.074 -0.995 1.459 sum 22.335 -2.162 5.183 23.031 Atomic orbital electron populations 1.69901 1.06499 1.27458 1.48601 1.25051 0.94694 0.99243 0.93333 0.87035 0.82406 0.83603 0.78104 1.20845 1.21048 1.16486 1.20787 0.88227 0.94799 1.51944 0.90564 1.19571 0.97500 0.94280 0.89611 0.94484 1.21611 0.91081 0.99968 1.01849 1.22023 0.99773 1.02173 0.93488 1.22046 0.96195 0.89601 0.95368 1.48200 1.10734 1.21009 1.44864 1.22452 0.83728 0.88890 0.85375 1.93343 1.71940 1.32192 1.52536 1.42319 1.03388 1.37872 1.44215 1.17176 0.91827 0.94809 0.90016 1.21581 0.98743 0.97537 0.91243 1.20934 0.93712 0.97141 1.00235 1.21056 0.97400 1.00775 0.93923 1.20426 0.90666 0.99740 0.94971 1.98362 1.35851 1.82323 1.88068 1.20634 0.96048 0.98128 0.99874 1.23645 0.71156 1.05642 1.02078 0.92339 0.91557 0.92355 0.91767 0.90868 0.91406 0.89530 0.75542 0.83103 0.84610 0.85011 0.85046 0.90562 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 21.72 26.49 -169.99 -4.50 17.22 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.24 -6.04 5.86 56.52 0.33 -5.71 16 7 C -0.52 -13.54 8.86 -34.44 -0.31 -13.85 16 8 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 9 C 0.01 0.22 1.78 -91.43 -0.16 0.06 16 10 H 0.04 0.84 5.66 -51.93 -0.29 0.54 16 11 C -0.11 -1.79 5.14 -26.69 -0.14 -1.92 16 12 C -0.14 -1.67 6.08 -26.61 -0.16 -1.83 16 13 C 0.09 1.06 6.43 -3.71 -0.02 1.03 16 14 N -0.54 -8.63 2.97 -174.53 -0.52 -9.15 16 15 C 0.55 9.07 7.47 -86.92 -0.65 8.42 16 16 S -0.63 -13.12 24.26 -107.50 -2.61 -15.72 16 17 N -0.65 -8.08 5.21 -11.40 -0.06 -8.14 16 18 C 0.16 1.97 5.93 -83.71 -0.50 1.47 16 19 C -0.07 -0.88 7.85 -39.39 -0.31 -1.19 16 20 C -0.10 -1.07 10.04 -39.62 -0.40 -1.47 16 21 C -0.11 -1.13 9.83 -39.51 -0.39 -1.52 16 22 C -0.03 -0.33 6.32 -39.52 -0.25 -0.58 16 23 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 24 C -0.12 -1.40 9.75 -39.36 -0.38 -1.78 16 25 C 0.09 1.89 5.33 -3.49 -0.02 1.87 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.55 5.59 -51.93 -0.29 0.26 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 3.71 6.33 -40.82 -0.26 3.45 16 34 H 0.15 2.20 6.19 -48.18 -0.30 1.90 16 35 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.12 2.76 4.68 -50.56 -0.24 2.52 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -31.92 336.05 -11.94 -43.87 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.81 Total: 3.91 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.78 Total: -9.14 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.20 Total: -42.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.50 Total: 17.22 kcal Atomic # 16 Polarization: -13.12 SS G_CDS: -2.61 Total: -15.72 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.92 -11.94 -43.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.857 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds