Wall clock time and date at job start Tue Mar 31 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47292 * 274.65708 * 3 2 1 5 5 H 1.48500 * 109.47268 * 34.65932 * 3 2 1 6 6 H 1.48500 * 109.47285 * 154.65722 * 3 2 1 7 7 C 1.37875 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00007 * 5.33692 * 7 2 1 9 9 C 1.50699 * 120.00005 * 185.34496 * 7 2 1 10 10 H 1.08997 * 109.52275 * 325.85783 * 9 7 2 11 11 C 1.53043 * 109.49287 * 205.78095 * 9 7 2 12 12 C 1.53043 * 109.53531 * 178.67709 * 11 9 7 13 13 C 1.53195 * 109.30983 * 61.36925 * 12 11 9 14 14 N 1.46931 * 108.77090 * 305.36057 * 13 12 11 15 15 C 1.34775 * 120.62933 * 233.58395 * 14 13 12 16 16 S 1.71204 * 119.99923 * 185.50971 * 15 14 13 17 17 N 1.34778 * 120.00122 * 5.50997 * 15 14 13 18 18 C 1.39895 * 119.99924 * 185.92871 * 17 15 14 19 19 C 1.38906 * 120.06452 * 40.97693 * 18 17 15 20 20 C 1.38095 * 119.95414 * 180.23032 * 19 18 17 21 21 C 1.38285 * 120.08476 * 359.79385 * 20 19 18 22 22 C 1.38389 * 120.12749 * 359.94920 * 21 20 19 23 23 Cl 1.73596 * 119.97609 * 180.02562 * 22 21 20 24 24 C 1.38246 * 120.04452 * 0.02728 * 22 21 20 25 25 C 1.46923 * 118.74064 * 53.86517 * 14 13 12 26 26 H 0.96997 * 119.99221 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46381 * 58.66647 * 11 9 7 28 28 H 1.08994 * 109.45047 * 298.69240 * 11 9 7 29 29 H 1.08999 * 109.50100 * 301.41554 * 12 11 9 30 30 H 1.09004 * 109.49782 * 181.31278 * 12 11 9 31 31 H 1.08998 * 109.58776 * 185.58129 * 13 12 11 32 32 H 1.08991 * 109.70737 * 65.21756 * 13 12 11 33 33 H 0.97000 * 119.99941 * 5.93208 * 17 15 14 34 34 H 1.08000 * 120.02707 * 359.97016 * 19 18 17 35 35 H 1.08004 * 119.96092 * 179.76410 * 20 19 18 36 36 H 1.07999 * 119.93432 * 179.97438 * 21 20 19 37 37 H 1.07994 * 120.03771 * 179.97438 * 24 22 21 38 38 H 1.09003 * 109.58653 * 65.92171 * 25 14 13 39 39 H 1.08993 * 109.58804 * 186.34491 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3983 2.1032 -1.3954 5 1 1.4994 2.6222 0.7962 6 1 3.5925 1.4137 0.5993 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1274 -0.0860 9 6 3.5067 -1.1969 0.1221 10 1 3.9147 -0.3216 -0.3834 11 6 4.0687 -2.4666 -0.5214 12 6 5.5962 -2.4547 -0.4277 13 6 6.0133 -2.4344 1.0462 14 7 5.3593 -1.2965 1.7069 15 6 6.0843 -0.3936 2.3965 16 16 5.2956 0.8450 3.2769 17 7 7.4301 -0.4656 2.3930 18 6 8.1786 0.3925 3.2057 19 6 7.7580 0.6673 4.5007 20 6 8.4961 1.5184 5.2994 21 6 9.6556 2.0940 4.8131 22 6 10.0807 1.8184 3.5253 23 17 11.5372 2.5425 2.9190 24 6 9.3462 0.9667 2.7213 25 6 3.8994 -1.1653 1.6069 26 1 -0.4849 0.8401 -0.0004 27 1 3.7695 -2.5060 -1.5688 28 1 3.6797 -3.3408 0.0006 29 1 5.9846 -1.5676 -0.9280 30 1 5.9971 -3.3480 -0.9068 31 1 7.0954 -2.3260 1.1183 32 1 5.7060 -3.3625 1.5280 33 1 7.8797 -1.1124 1.8269 34 1 6.8521 0.2191 4.8813 35 1 8.1671 1.7352 6.3050 36 1 10.2307 2.7596 5.4397 37 1 9.6778 0.7520 1.7162 38 1 3.4213 -1.9923 2.1318 39 1 3.5864 -0.2195 2.0491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849272286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:39 Heat of formation + Delta-G solvation = 26.231189 kcal Electronic energy + Delta-G solvation = -22671.102525 eV Core-core repulsion = 19343.922680 eV Total energy + Delta-G solvation = -3327.179845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60279 -40.26053 -38.05959 -37.15535 -35.26886 -34.11480 -32.46141 -31.87157 -30.61860 -27.52085 -27.07412 -24.52765 -23.79867 -23.68511 -22.29976 -20.91691 -19.73909 -19.21027 -18.86857 -17.49395 -17.09868 -16.62612 -16.37108 -15.82220 -15.75002 -15.48334 -15.41432 -15.00518 -14.68631 -14.63243 -14.42034 -13.97539 -13.62417 -13.10548 -13.09305 -12.83536 -12.67552 -12.51280 -12.47927 -12.29632 -12.09851 -11.92080 -11.84826 -11.63942 -11.24277 -11.14777 -10.80022 -10.57835 -9.88704 -9.39940 -8.97447 -8.37542 -8.27519 -6.39365 -0.19787 0.23458 0.46979 0.80037 1.07066 1.26864 1.39202 1.46668 1.52918 2.11687 2.30751 2.65345 3.03176 3.66308 3.80550 3.89219 3.99954 4.08387 4.13312 4.23490 4.33313 4.40284 4.42548 4.49676 4.58158 4.69943 4.88308 4.92005 4.94424 5.05507 5.10204 5.15285 5.23297 5.41628 5.44568 5.53409 5.55935 5.61678 5.69893 5.87008 6.20775 6.27578 6.71480 7.28891 8.79074 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.003609 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.423533 B = 7756.666219 C = 8284.718379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.031 3.969 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.240 1.240 7 C -0.509 4.509 8 H 0.048 0.952 9 C 0.010 3.990 10 H 0.025 0.975 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.086 3.914 14 N -0.542 5.542 15 C 0.576 3.424 16 S -0.729 6.729 17 N -0.619 5.619 18 C 0.134 3.866 19 C -0.083 4.083 20 C -0.102 4.102 21 C -0.105 4.105 22 C -0.038 4.038 23 Cl -0.064 7.064 24 C -0.119 4.119 25 C 0.109 3.891 26 H 0.265 0.735 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.424 0.576 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.303 -4.171 5.274 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.168 4.168 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.163 1.163 7 C -0.547 4.547 8 H 0.066 0.934 9 C -0.010 4.010 10 H 0.043 0.957 11 C -0.144 4.144 12 C -0.164 4.164 13 C -0.037 4.037 14 N -0.245 5.245 15 C 0.214 3.786 16 S -0.597 6.597 17 N -0.250 5.250 18 C 0.040 3.960 19 C -0.105 4.105 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.066 4.066 23 Cl -0.035 7.035 24 C -0.140 4.140 25 C -0.013 4.013 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.269 0.731 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.094 0.906 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 25.671 -3.342 5.681 26.504 hybrid contribution -0.131 0.311 -0.818 0.885 sum 25.541 -3.031 4.862 26.175 Atomic orbital electron populations 1.70014 1.07929 1.27898 1.51854 1.25685 0.95090 1.02010 0.93994 0.86165 0.81121 0.80384 0.77888 1.20049 1.22684 1.16275 1.21145 0.91105 0.93121 1.49353 0.93420 1.19501 0.94252 0.96404 0.90862 0.95726 1.21513 0.94732 0.97282 1.00838 1.21966 0.95831 1.04223 0.94387 1.22497 0.98327 0.88445 0.94409 1.47956 1.09374 1.22100 1.45097 1.21788 0.84858 0.87469 0.84473 1.93551 1.73833 1.35998 1.56354 1.42095 1.01688 1.37686 1.43528 1.17301 0.92567 0.96057 0.90051 1.21529 0.98495 0.98382 0.92112 1.21158 0.93698 0.96365 1.00927 1.21344 0.96938 1.00172 0.93981 1.20592 0.91065 0.99668 0.95251 1.98370 1.35116 1.82096 1.87962 1.20777 0.95120 0.97458 1.00672 1.22935 0.73936 1.03980 1.00469 0.92548 0.92262 0.91925 0.91982 0.86560 0.87146 0.87383 0.73123 0.85262 0.82895 0.82712 0.83198 0.90594 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 2 C 0.03 1.81 5.47 84.65 0.46 2.28 16 3 Si 0.92 46.74 26.49 68.60 1.82 48.55 16 4 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 6 H -0.24 -12.04 5.86 99.48 0.58 -11.45 16 7 C -0.51 -27.20 8.86 25.60 0.23 -26.98 16 8 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 9 C 0.01 0.41 1.78 -11.32 -0.02 0.39 16 10 H 0.02 1.09 5.66 -2.39 -0.01 1.08 16 11 C -0.11 -3.28 5.14 30.62 0.16 -3.12 16 12 C -0.13 -2.49 6.08 30.67 0.19 -2.31 16 13 C 0.09 1.53 6.43 86.36 0.56 2.09 16 14 N -0.54 -15.94 2.97 -706.09 -2.09 -18.03 16 15 C 0.58 17.93 7.47 179.05 1.34 19.27 16 16 S -0.73 -30.75 24.26 -56.49 -1.37 -32.12 16 17 N -0.62 -13.57 5.21 -189.99 -0.99 -14.56 16 18 C 0.13 3.08 5.93 38.16 0.23 3.31 16 19 C -0.08 -2.07 7.85 22.40 0.18 -1.89 16 20 C -0.10 -2.03 10.04 22.25 0.22 -1.80 16 21 C -0.11 -1.85 9.83 22.32 0.22 -1.63 16 22 C -0.04 -0.71 6.32 22.31 0.14 -0.57 16 23 Cl -0.06 -1.09 28.95 -2.72 -0.08 -1.16 16 24 C -0.12 -2.29 9.75 22.42 0.22 -2.07 16 25 C 0.11 4.30 5.33 86.51 0.46 4.77 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.11 1.07 5.59 -2.39 -0.01 1.06 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.42 5.73 6.33 -92.71 -0.59 5.14 16 34 H 0.13 3.84 6.19 -5.65 -0.03 3.80 16 35 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.08 2.96 8.14 -2.39 -0.02 2.95 16 39 H 0.09 4.05 4.68 -3.26 -0.02 4.04 16 Total: -1.00 -74.98 336.05 2.51 -72.47 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.35 Total: 11.01 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.57 Total: -8.29 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.79 Total: -90.46 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.82 Total: 48.55 kcal Atomic # 16 Polarization: -30.75 SS G_CDS: -1.37 Total: -32.12 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -74.98 2.51 -72.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.703 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds