Wall clock time and date at job start Tue Mar 31 2020 14:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47313 * 270.00021 * 3 2 1 5 5 H 1.48506 * 109.47216 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47161 * 149.99897 * 3 2 1 7 7 C 1.37875 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99672 * 173.69994 * 7 2 1 9 9 C 1.50699 * 120.00428 * 353.70476 * 7 2 1 10 10 C 1.53000 * 115.54957 * 86.10523 * 9 7 2 11 11 O 1.45191 * 109.47146 * 65.10727 * 10 9 7 12 12 C 1.34231 * 117.00189 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00049 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00072 * 180.02562 * 12 11 10 15 15 H 1.08995 * 109.47343 * 305.00378 * 14 12 11 16 16 O 1.42902 * 109.47162 * 185.00451 * 14 12 11 17 17 C 1.53001 * 109.47161 * 65.00613 * 14 12 11 18 18 C 1.50696 * 109.47298 * 184.99927 * 17 14 12 19 19 C 1.38237 * 120.00844 * 265.00078 * 18 17 14 20 20 C 1.38214 * 120.01960 * 180.02562 * 19 18 17 21 21 C 1.38272 * 120.02325 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.01047 * 359.97389 * 21 20 19 23 23 C 1.38329 * 120.00778 * 84.99510 * 18 17 14 24 24 Cl 1.73596 * 120.01293 * 0.25884 * 23 18 17 25 25 C 1.52998 * 117.49901 * 231.78211 * 9 7 2 26 26 C 1.53006 * 117.49603 * 300.43890 * 9 7 2 27 27 H 0.97005 * 119.99881 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46891 * 305.10860 * 10 9 7 29 29 H 1.08999 * 109.47259 * 185.11350 * 10 9 7 30 30 H 0.96701 * 113.99681 * 300.00617 * 16 14 12 31 31 H 1.09001 * 109.47054 * 64.99565 * 17 14 12 32 32 H 1.09001 * 109.47051 * 305.00058 * 17 14 12 33 33 H 1.08007 * 119.99045 * 359.97438 * 19 18 17 34 34 H 1.07991 * 119.99228 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.99472 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.00539 * 180.02562 * 22 21 20 37 37 H 1.09005 * 117.49144 * 215.00031 * 25 9 7 38 38 H 1.08996 * 117.49948 * 0.02562 * 25 9 7 39 39 H 1.08998 * 117.49530 * 359.97438 * 26 9 7 40 40 H 1.09000 * 117.49662 * 144.97141 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1969 -0.1021 9 6 1.2579 -2.4952 0.1442 10 6 0.7192 -3.0940 -1.1566 11 8 1.8299 -3.4658 -2.0146 12 6 1.5260 -4.0105 -3.2032 13 8 0.3702 -4.1710 -3.5164 14 6 2.6265 -4.4220 -4.1470 15 1 3.2824 -3.5716 -4.3331 16 8 2.0560 -4.8624 -5.3809 17 6 3.4339 -5.5619 -3.5228 18 6 4.6071 -5.8908 -4.4096 19 6 4.5079 -6.9105 -5.3376 20 6 5.5839 -7.2127 -6.1507 21 6 6.7606 -6.4955 -6.0361 22 6 6.8610 -5.4758 -5.1087 23 6 5.7836 -5.1722 -4.2953 24 17 5.9113 -3.8958 -3.1256 25 6 1.7341 -3.4672 1.2255 26 6 0.4253 -2.6956 1.4122 27 1 -0.4850 0.8401 0.0004 28 1 0.0976 -2.3574 -1.6656 29 1 0.1232 -3.9781 -0.9302 30 1 1.4597 -5.6184 -5.2908 31 1 2.7993 -6.4420 -3.4185 32 1 3.7951 -5.2561 -2.5409 33 1 3.5895 -7.4719 -5.4268 34 1 5.5058 -8.0091 -6.8758 35 1 7.6009 -6.7317 -6.6719 36 1 7.7799 -4.9154 -5.0195 37 1 1.6636 -4.5334 1.0100 38 1 2.5871 -3.1655 1.8332 39 1 0.4180 -1.8865 2.1425 40 1 -0.5063 -3.2538 1.3195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849761440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:15 Heat of formation + Delta-G solvation = -100.091306 kcal Electronic energy + Delta-G solvation = -24952.243810 eV Core-core repulsion = 21144.540589 eV Total energy + Delta-G solvation = -3807.703221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31287 -39.48753 -37.38776 -36.47429 -36.39696 -35.25557 -33.14241 -31.97400 -30.94506 -29.45318 -26.92048 -25.42781 -24.57760 -22.92017 -21.55692 -21.23497 -20.61527 -19.29837 -17.82210 -17.22489 -16.94489 -16.24025 -16.04991 -15.71093 -15.43447 -15.16640 -14.67232 -14.46697 -14.03491 -13.95957 -13.48059 -13.39688 -13.18876 -12.45057 -12.23356 -12.19357 -11.82904 -11.76761 -11.63754 -11.53581 -11.39144 -10.99400 -10.97314 -10.87341 -10.74799 -10.54107 -10.31815 -9.95015 -9.90632 -9.55313 -9.09126 -8.85357 -8.80237 -8.48095 -8.23558 -6.08586 -4.13816 0.93367 1.04139 2.09031 2.56314 3.13082 3.28432 3.35394 3.38799 3.43284 4.12681 4.38181 4.46842 4.53823 4.70842 4.79825 4.92963 5.04835 5.12112 5.17847 5.21750 5.38248 5.45657 5.57224 5.66421 5.80251 5.93393 5.99822 6.14876 6.19531 6.20860 6.29225 6.48230 6.56760 6.60169 6.69809 7.00388 7.16128 7.33165 7.37895 7.43872 7.85055 8.26002 8.38273 8.88023 9.52376 11.00766 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003681 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.410531 B = 7605.130444 C = 8367.953667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.115 3.885 11 O -0.330 6.330 12 C 0.426 3.574 13 O -0.515 6.515 14 C 0.127 3.873 15 H 0.136 0.864 16 O -0.530 6.530 17 C -0.114 4.114 18 C -0.064 4.064 19 C -0.094 4.094 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.035 4.035 24 Cl -0.052 7.052 25 C -0.205 4.205 26 C -0.144 4.144 27 H 0.261 0.739 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.380 0.620 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 -14.650 -10.200 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.041 3.959 11 O -0.245 6.245 12 C 0.268 3.732 13 O -0.405 6.405 14 C 0.066 3.934 15 H 0.153 0.847 16 O -0.335 6.335 17 C -0.152 4.152 18 C -0.065 4.065 19 C -0.112 4.112 20 C -0.135 4.135 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.062 4.062 24 Cl -0.022 7.022 25 C -0.242 4.242 26 C -0.182 4.182 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.229 0.771 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.902 -13.932 -10.360 20.501 hybrid contribution -0.163 0.672 0.328 0.765 sum 10.739 -13.260 -10.033 19.794 Atomic orbital electron populations 1.69997 1.05911 1.26732 1.49128 1.25006 0.94843 0.99081 0.94460 0.86611 0.80000 0.83296 0.78265 1.20564 1.21128 1.19705 1.20369 0.93085 0.88298 1.50970 0.91879 1.18760 0.98963 0.94217 0.84276 1.22954 0.85405 0.96922 0.90573 1.86536 1.41491 1.70136 1.26364 1.24436 0.90556 0.75370 0.82866 1.90630 1.21832 1.52287 1.75754 1.21393 0.90651 0.98184 0.83178 0.84681 1.86656 1.65318 1.53814 1.27723 1.21321 0.95078 0.98886 0.99888 1.19496 0.93524 0.95840 0.97644 1.20998 0.98953 0.96630 0.94624 1.21214 0.93188 0.99871 0.99226 1.21109 0.98258 0.95546 0.98182 1.21062 0.97902 0.98362 0.95604 1.20975 0.95654 0.94016 0.95568 1.98437 1.98094 1.48952 1.56764 1.23009 0.98563 0.95647 1.06972 1.22536 0.92270 1.01217 1.02165 0.92889 0.90582 0.94304 0.77129 0.89543 0.87378 0.85200 0.85508 0.85312 0.84944 0.91594 0.90048 0.89389 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 12.88 55.43 0.71 -24.12 16 2 C 0.07 1.89 5.38 -17.82 -0.10 1.80 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.49 -13.27 8.77 -34.44 -0.30 -13.57 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.94 1.62 -155.66 -0.25 0.69 16 10 C 0.11 2.69 5.29 37.16 0.20 2.88 16 11 O -0.33 -7.04 10.12 -39.26 -0.40 -7.44 16 12 C 0.43 7.98 7.27 36.01 0.26 8.24 16 13 O -0.51 -10.82 16.07 -25.46 -0.41 -11.23 16 14 C 0.13 1.83 3.48 -27.88 -0.10 1.73 16 15 H 0.14 2.02 7.97 -51.93 -0.41 1.61 16 16 O -0.53 -7.11 12.69 -55.14 -0.70 -7.81 16 17 C -0.11 -1.35 4.52 -27.88 -0.13 -1.48 16 18 C -0.06 -0.71 4.92 -104.59 -0.51 -1.22 16 19 C -0.09 -0.86 9.62 -39.59 -0.38 -1.24 16 20 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 21 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 22 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 23 C -0.04 -0.41 6.31 -39.50 -0.25 -0.66 16 24 Cl -0.05 -0.67 27.22 -51.86 -1.41 -2.09 16 25 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 26 C -0.14 -3.32 9.37 -26.69 -0.25 -3.57 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.08 2.00 8.13 -51.93 -0.42 1.57 16 29 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.38 3.94 8.79 45.56 0.40 4.34 16 31 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.11 1.41 7.09 -51.93 -0.37 1.04 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 39 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 40 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -31.15 365.35 -9.55 -40.70 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.57 Total: 5.49 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.26 Total: -15.13 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.71 Total: -24.12 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.51 Total: -26.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.41 Total: -2.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.15 -9.55 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849761440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.394 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds