Wall clock time and date at job start Tue Mar 31 2020 14:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47313 * 270.00021 * 3 2 1 5 5 H 1.48506 * 109.47216 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47161 * 149.99897 * 3 2 1 7 7 C 1.37875 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99672 * 173.69994 * 7 2 1 9 9 C 1.50699 * 120.00428 * 353.70476 * 7 2 1 10 10 C 1.53000 * 115.54957 * 86.10523 * 9 7 2 11 11 O 1.45191 * 109.47146 * 65.10727 * 10 9 7 12 12 C 1.34231 * 117.00189 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00049 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00072 * 180.02562 * 12 11 10 15 15 H 1.08995 * 109.47343 * 305.00378 * 14 12 11 16 16 O 1.42902 * 109.47162 * 185.00451 * 14 12 11 17 17 C 1.53001 * 109.47161 * 65.00613 * 14 12 11 18 18 C 1.50696 * 109.47298 * 184.99927 * 17 14 12 19 19 C 1.38237 * 120.00844 * 265.00078 * 18 17 14 20 20 C 1.38214 * 120.01960 * 180.02562 * 19 18 17 21 21 C 1.38272 * 120.02325 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.01047 * 359.97389 * 21 20 19 23 23 C 1.38329 * 120.00778 * 84.99510 * 18 17 14 24 24 Cl 1.73596 * 120.01293 * 0.25884 * 23 18 17 25 25 C 1.52998 * 117.49901 * 231.78211 * 9 7 2 26 26 C 1.53006 * 117.49603 * 300.43890 * 9 7 2 27 27 H 0.97005 * 119.99881 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46891 * 305.10860 * 10 9 7 29 29 H 1.08999 * 109.47259 * 185.11350 * 10 9 7 30 30 H 0.96701 * 113.99681 * 300.00617 * 16 14 12 31 31 H 1.09001 * 109.47054 * 64.99565 * 17 14 12 32 32 H 1.09001 * 109.47051 * 305.00058 * 17 14 12 33 33 H 1.08007 * 119.99045 * 359.97438 * 19 18 17 34 34 H 1.07991 * 119.99228 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.99472 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.00539 * 180.02562 * 22 21 20 37 37 H 1.09005 * 117.49144 * 215.00031 * 25 9 7 38 38 H 1.08996 * 117.49948 * 0.02562 * 25 9 7 39 39 H 1.08998 * 117.49530 * 359.97438 * 26 9 7 40 40 H 1.09000 * 117.49662 * 144.97141 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1969 -0.1021 9 6 1.2579 -2.4952 0.1442 10 6 0.7192 -3.0940 -1.1566 11 8 1.8299 -3.4658 -2.0146 12 6 1.5260 -4.0105 -3.2032 13 8 0.3702 -4.1710 -3.5164 14 6 2.6265 -4.4220 -4.1470 15 1 3.2824 -3.5716 -4.3331 16 8 2.0560 -4.8624 -5.3809 17 6 3.4339 -5.5619 -3.5228 18 6 4.6071 -5.8908 -4.4096 19 6 4.5079 -6.9105 -5.3376 20 6 5.5839 -7.2127 -6.1507 21 6 6.7606 -6.4955 -6.0361 22 6 6.8610 -5.4758 -5.1087 23 6 5.7836 -5.1722 -4.2953 24 17 5.9113 -3.8958 -3.1256 25 6 1.7341 -3.4672 1.2255 26 6 0.4253 -2.6956 1.4122 27 1 -0.4850 0.8401 0.0004 28 1 0.0976 -2.3574 -1.6656 29 1 0.1232 -3.9781 -0.9302 30 1 1.4597 -5.6184 -5.2908 31 1 2.7993 -6.4420 -3.4185 32 1 3.7951 -5.2561 -2.5409 33 1 3.5895 -7.4719 -5.4268 34 1 5.5058 -8.0091 -6.8758 35 1 7.6009 -6.7317 -6.6719 36 1 7.7799 -4.9154 -5.0195 37 1 1.6636 -4.5334 1.0100 38 1 2.5871 -3.1655 1.8332 39 1 0.4180 -1.8865 2.1425 40 1 -0.5063 -3.2538 1.3195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849761440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:14 Heat of formation + Delta-G solvation = -116.726828 kcal Electronic energy + Delta-G solvation = -24952.965180 eV Core-core repulsion = 21144.540589 eV Total energy + Delta-G solvation = -3808.424592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72626 -40.38313 -38.88947 -37.86648 -37.34679 -36.90656 -34.05688 -34.00159 -31.63378 -30.51722 -28.58071 -27.35702 -25.79869 -23.61115 -23.02080 -22.37290 -22.01458 -21.21736 -19.17582 -18.67128 -18.01791 -17.77612 -17.37595 -16.81877 -16.74501 -16.46851 -16.14032 -15.69117 -15.59419 -15.01433 -14.70876 -14.39439 -14.18862 -14.04345 -13.81020 -13.57791 -13.23678 -13.00886 -12.91163 -12.83296 -12.58546 -12.44093 -12.39686 -12.16544 -12.10764 -12.07567 -11.71687 -11.66820 -11.58442 -11.15046 -10.79254 -10.50556 -10.09657 -9.80242 -9.57696 -8.16299 -6.26857 0.20611 0.35394 1.06010 1.25829 1.38526 1.40400 1.50127 1.66597 2.39988 2.70702 3.06271 3.13060 3.36076 3.61679 3.71593 3.74703 3.89360 4.02574 4.11626 4.19792 4.35894 4.41968 4.44752 4.47205 4.63198 4.64437 4.69850 4.80357 4.87225 4.96132 5.05398 5.17584 5.33719 5.42051 5.46399 5.53360 5.56489 5.63266 5.72955 5.93424 6.33418 6.41925 6.72428 6.78417 7.41921 8.92500 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003681 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.410531 B = 7605.130444 C = 8367.953667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.005 3.995 10 C 0.127 3.873 11 O -0.339 6.339 12 C 0.424 3.576 13 O -0.540 6.540 14 C 0.143 3.857 15 H 0.128 0.872 16 O -0.532 6.532 17 C -0.105 4.105 18 C -0.080 4.080 19 C -0.097 4.097 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.053 4.053 24 Cl -0.079 7.079 25 C -0.176 4.176 26 C -0.146 4.146 27 H 0.261 0.739 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.395 0.605 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 -16.603 -11.462 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.004 3.996 10 C 0.054 3.946 11 O -0.254 6.254 12 C 0.267 3.733 13 O -0.431 6.431 14 C 0.081 3.919 15 H 0.146 0.854 16 O -0.339 6.339 17 C -0.142 4.142 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.080 4.080 24 Cl -0.050 7.050 25 C -0.213 4.213 26 C -0.183 4.183 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.246 0.754 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.247 -15.905 -11.626 23.197 hybrid contribution -0.548 1.175 0.600 1.429 sum 11.699 -14.730 -11.026 21.804 Atomic orbital electron populations 1.70097 1.07047 1.27280 1.50180 1.25679 0.95575 1.01996 0.94322 0.85725 0.79096 0.79774 0.78131 1.20585 1.20616 1.19013 1.20614 0.92862 0.89900 1.50697 0.92874 1.18843 1.00609 0.94704 0.85399 1.22550 0.85581 0.96318 0.90200 1.86549 1.40733 1.70661 1.27473 1.25430 0.91461 0.74096 0.82275 1.90609 1.23255 1.53231 1.75999 1.21333 0.88996 0.99111 0.82421 0.85446 1.86637 1.65707 1.54669 1.26868 1.21210 0.95465 0.98381 0.99159 1.19483 0.92939 0.97080 0.98622 1.21304 1.00300 0.95962 0.93916 1.21619 0.92508 1.00088 0.99022 1.21501 0.99306 0.94367 0.97485 1.21298 0.97815 0.99107 0.95725 1.21167 0.96839 0.94006 0.95984 1.98422 1.98184 1.50378 1.58024 1.23014 0.97518 0.96493 1.04255 1.22474 0.93692 1.01285 1.00877 0.93000 0.94425 0.92942 0.75410 0.87435 0.88839 0.83166 0.82551 0.82481 0.84037 0.88856 0.89768 0.91256 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.31 12.88 21.45 0.28 -52.03 16 2 C 0.02 1.37 5.38 84.65 0.46 1.82 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.50 -27.72 8.77 25.60 0.22 -27.50 16 8 H 0.05 2.95 7.82 -2.91 -0.02 2.93 16 9 C 0.00 0.24 1.62 -52.93 -0.09 0.16 16 10 C 0.13 6.07 5.29 71.98 0.38 6.45 16 11 O -0.34 -14.66 10.12 -51.43 -0.52 -15.18 16 12 C 0.42 15.93 7.27 71.24 0.52 16.45 16 13 O -0.54 -22.78 16.07 28.40 0.46 -22.32 16 14 C 0.14 4.03 3.48 29.85 0.10 4.13 16 15 H 0.13 3.84 7.97 -2.39 -0.02 3.83 16 16 O -0.53 -13.48 12.69 -129.95 -1.65 -15.13 16 17 C -0.10 -2.36 4.52 29.85 0.13 -2.23 16 18 C -0.08 -1.64 4.92 -19.84 -0.10 -1.74 16 19 C -0.10 -1.47 9.62 22.26 0.21 -1.26 16 20 C -0.11 -1.40 10.05 22.27 0.22 -1.18 16 21 C -0.11 -1.40 10.05 22.27 0.22 -1.18 16 22 C -0.12 -2.11 9.83 22.29 0.22 -1.89 16 23 C -0.05 -1.18 6.31 22.32 0.14 -1.04 16 24 Cl -0.08 -2.09 27.22 -2.72 -0.07 -2.16 16 25 C -0.18 -7.32 9.96 30.62 0.30 -7.01 16 26 C -0.15 -6.68 9.37 30.62 0.29 -6.39 16 27 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 28 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 29 H 0.05 2.31 8.08 -2.39 -0.02 2.29 16 30 H 0.40 7.38 8.79 -74.06 -0.65 6.73 16 31 H 0.11 1.91 8.05 -2.39 -0.02 1.89 16 32 H 0.09 2.41 7.09 -2.39 -0.02 2.39 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.16 0.98 8.06 -2.92 -0.02 0.96 16 35 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -68.02 365.35 4.17 -63.84 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.41 Total: 19.42 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.25 Total: -22.40 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.28 Total: -52.03 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.71 Total: -52.62 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.07 Total: -2.16 kcal Total: -68.02 4.17 -63.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849761440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.883 kcal (2) G-P(sol) polarization free energy of solvation -68.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds