Wall clock time and date at job start Tue Mar 31 2020 14:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99695 * 2 1 4 4 H 1.48503 * 109.46962 * 264.47015 * 3 2 1 5 5 H 1.48495 * 109.47430 * 24.47093 * 3 2 1 6 6 H 1.48503 * 109.47237 * 144.47375 * 3 2 1 7 7 C 1.37874 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99541 * 357.38945 * 7 2 1 9 9 C 1.50694 * 120.00296 * 177.39706 * 7 2 1 10 10 C 1.53003 * 115.55147 * 86.91808 * 9 7 2 11 11 O 1.45197 * 109.46912 * 54.50258 * 10 9 7 12 12 C 1.34229 * 116.99602 * 176.06588 * 11 10 9 13 13 O 1.20821 * 120.00388 * 0.36972 * 12 11 10 14 14 C 1.50707 * 119.99801 * 180.37521 * 12 11 10 15 15 H 1.08994 * 109.46912 * 52.64339 * 14 12 11 16 16 O 1.42898 * 109.47116 * 172.64425 * 14 12 11 17 17 C 1.52999 * 109.46837 * 292.64261 * 14 12 11 18 18 C 1.50700 * 109.46931 * 184.09577 * 17 14 12 19 19 C 1.38243 * 120.00480 * 264.72255 * 18 17 14 20 20 C 1.38219 * 120.01101 * 179.77121 * 19 18 17 21 21 C 1.38261 * 120.02767 * 0.50402 * 20 19 18 22 22 C 1.38190 * 120.01525 * 359.74919 * 21 20 19 23 23 C 1.38329 * 120.01018 * 84.99541 * 18 17 14 24 24 Cl 1.73601 * 120.01118 * 359.96364 * 23 18 17 25 25 C 1.53004 * 117.49813 * 232.59203 * 9 7 2 26 26 C 1.53003 * 117.49493 * 301.25135 * 9 7 2 27 27 H 0.96998 * 120.00775 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47075 * 294.50651 * 10 9 7 29 29 H 1.08997 * 109.47123 * 174.50656 * 10 9 7 30 30 H 0.96702 * 113.99921 * 59.99264 * 16 14 12 31 31 H 1.08998 * 109.46982 * 304.09117 * 17 14 12 32 32 H 1.09001 * 109.47325 * 64.09403 * 17 14 12 33 33 H 1.07996 * 119.99154 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.98419 * 180.23141 * 20 19 18 35 35 H 1.07997 * 119.99376 * 179.76813 * 21 20 19 36 36 H 1.07993 * 120.01112 * 180.02562 * 22 21 20 37 37 H 1.08998 * 117.49256 * 215.00096 * 25 9 7 38 38 H 1.08991 * 117.49737 * 0.02562 * 25 9 7 39 39 H 1.08993 * 117.50426 * 359.97109 * 26 9 7 40 40 H 1.09004 * 117.49764 * 144.97480 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6133 1.9790 -1.3936 5 1 1.3930 2.6836 0.5799 6 1 3.4833 1.4768 0.8136 7 6 2.0045 -1.1940 -0.0005 8 1 1.4653 -2.1288 0.0417 9 6 3.5103 -1.1946 -0.0598 10 6 4.2239 -1.0900 1.2896 11 8 3.7493 -2.1419 2.1708 12 6 4.3375 -2.2409 3.3733 13 8 5.2151 -1.4699 3.6820 14 6 3.9034 -3.3139 4.3384 15 1 3.9366 -4.2838 3.8423 16 8 4.7821 -3.3250 5.4652 17 6 2.4753 -3.0298 4.8081 18 6 2.0774 -4.0450 5.8484 19 6 1.3725 -5.1750 5.4776 20 6 1.0116 -6.1085 6.4308 21 6 1.3461 -5.9077 7.7573 22 6 2.0461 -4.7760 8.1300 23 6 2.4123 -3.8436 7.1753 24 17 3.2920 -2.4218 7.6426 25 6 4.1742 -2.0432 -1.1462 26 6 4.1702 -0.5168 -1.2624 27 1 -0.4851 0.8400 0.0004 28 1 4.0139 -0.1187 1.7373 29 1 5.2985 -1.1972 1.1416 30 1 4.8035 -2.4917 5.9555 31 1 2.4267 -2.0299 5.2391 32 1 1.7942 -3.0932 3.9594 33 1 1.1075 -5.3304 4.4422 34 1 0.4643 -6.9929 6.1401 35 1 1.0606 -6.6356 8.5022 36 1 2.3077 -4.6194 9.1660 37 1 5.1193 -2.5269 -0.8995 38 1 3.5218 -2.6006 -1.8182 39 1 3.5153 -0.0709 -2.0108 40 1 5.1126 0.0039 -1.0921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849761441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:17 Heat of formation + Delta-G solvation = -90.413621 kcal Electronic energy + Delta-G solvation = -25065.334070 eV Core-core repulsion = 21258.050504 eV Total energy + Delta-G solvation = -3807.283565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39434 -39.51786 -37.55353 -36.69848 -36.50384 -35.42843 -33.07622 -32.14250 -30.89828 -29.50454 -27.26189 -25.50770 -24.62403 -22.87088 -21.76924 -21.48973 -20.71532 -19.22879 -17.92541 -17.31959 -16.99745 -16.32460 -16.17450 -15.79681 -15.48399 -15.34231 -14.94771 -14.45029 -14.09247 -13.97404 -13.48171 -13.29689 -12.93793 -12.72673 -12.63219 -12.32586 -12.15911 -11.90451 -11.76579 -11.66858 -11.34979 -11.20487 -11.06040 -10.93590 -10.64750 -10.58449 -10.27688 -10.03210 -9.93585 -9.65522 -9.09615 -9.06013 -8.79065 -8.64333 -8.59298 -6.15991 -4.18429 0.97509 1.07359 1.98421 2.46087 3.01112 3.23694 3.33569 3.34787 3.45464 4.16041 4.35712 4.52836 4.60270 4.72741 4.79056 4.85291 4.96708 5.09124 5.10830 5.19871 5.21838 5.44089 5.59815 5.64872 5.72957 5.88612 5.90529 5.93695 6.02282 6.05754 6.19984 6.23165 6.27684 6.37515 6.61344 6.61558 6.79693 7.02144 7.05761 7.39354 7.64584 8.14045 8.45691 8.88426 9.46463 10.95789 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003531 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.927814 B = 7927.581382 C = 8229.980825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.478 4.478 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.103 3.897 11 O -0.321 6.321 12 C 0.425 3.575 13 O -0.516 6.516 14 C 0.128 3.872 15 H 0.137 0.863 16 O -0.533 6.533 17 C -0.118 4.118 18 C -0.061 4.061 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.019 4.019 24 Cl -0.067 7.067 25 C -0.174 4.174 26 C -0.192 4.192 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.379 0.621 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -10.173 14.099 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.515 4.515 8 H 0.100 0.900 9 C -0.007 4.007 10 C 0.030 3.970 11 O -0.235 6.235 12 C 0.268 3.732 13 O -0.406 6.406 14 C 0.067 3.933 15 H 0.155 0.845 16 O -0.341 6.341 17 C -0.156 4.156 18 C -0.062 4.062 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.046 4.046 24 Cl -0.038 7.038 25 C -0.211 4.211 26 C -0.229 4.229 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.995 -10.257 13.992 17.803 hybrid contribution 0.519 1.891 0.172 1.968 sum 4.514 -8.367 14.164 17.058 Atomic orbital electron populations 1.69867 1.06208 1.27137 1.50023 1.24951 0.94598 0.98803 0.94046 0.86991 0.80210 0.83692 0.78912 1.19926 1.21878 1.18868 1.20165 0.85799 0.94657 1.50920 0.90001 1.19328 0.95864 1.01007 0.84547 1.23060 0.95786 0.88238 0.89953 1.86581 1.59141 1.53059 1.24749 1.24627 0.80098 0.85174 0.83343 1.90624 1.30308 1.42347 1.77360 1.21391 0.88854 0.97721 0.85330 0.84526 1.86643 1.66080 1.40907 1.40505 1.21343 0.96303 0.98686 0.99255 1.19509 0.98069 0.96389 0.92215 1.21156 0.97267 0.92747 1.00594 1.21251 0.99632 0.99337 0.93015 1.21095 0.98440 0.97041 0.96553 1.21002 0.99214 0.93690 0.99103 1.20768 0.99381 0.90426 0.94019 1.98335 1.74630 1.39182 1.91695 1.22867 1.01015 0.92544 1.04720 1.23020 1.01319 0.95620 1.02944 0.92480 0.91389 0.93400 0.76899 0.89420 0.86859 0.84432 0.85295 0.85273 0.85077 0.90829 0.89051 0.88636 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.17 25.03 -169.99 -4.25 16.91 16 4 H -0.27 -6.41 7.02 56.52 0.40 -6.02 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.16 5.53 56.52 0.31 -5.84 16 7 C -0.48 -12.83 9.15 -34.44 -0.32 -13.15 16 8 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 9 C -0.01 -0.15 1.15 -155.66 -0.18 -0.33 16 10 C 0.10 2.24 5.22 37.16 0.19 2.43 16 11 O -0.32 -6.57 9.95 -39.26 -0.39 -6.97 16 12 C 0.43 7.77 7.27 36.01 0.26 8.04 16 13 O -0.52 -10.58 16.02 -25.44 -0.41 -10.99 16 14 C 0.13 1.84 3.58 -27.88 -0.10 1.74 16 15 H 0.14 1.71 8.14 -51.93 -0.42 1.29 16 16 O -0.53 -7.77 11.30 -55.08 -0.62 -8.39 16 17 C -0.12 -1.57 4.72 -27.88 -0.13 -1.70 16 18 C -0.06 -0.73 4.93 -104.59 -0.52 -1.24 16 19 C -0.10 -1.03 9.68 -39.59 -0.38 -1.41 16 20 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 21 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 22 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 23 C -0.02 -0.22 5.89 -39.50 -0.23 -0.46 16 24 Cl -0.07 -0.78 24.14 -51.86 -1.25 -2.03 16 25 C -0.17 -3.44 9.93 -26.69 -0.26 -3.70 16 26 C -0.19 -3.95 7.70 -26.69 -0.21 -4.15 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.07 1.56 6.16 -51.93 -0.32 1.24 16 29 H 0.05 0.96 8.01 -51.93 -0.42 0.55 16 30 H 0.38 5.32 6.24 45.56 0.28 5.60 16 31 H 0.09 1.21 7.13 -51.93 -0.37 0.84 16 32 H 0.11 1.53 8.05 -51.93 -0.42 1.11 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.10 2.04 7.28 -51.93 -0.38 1.67 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -31.06 348.69 -8.70 -39.77 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.65 Total: 8.05 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.15 Total: -16.08 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.53 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.42 Total: -26.34 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.25 Total: 16.91 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.25 Total: -2.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.06 -8.70 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849761441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.647 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds