Wall clock time and date at job start Tue Mar 31 2020 14:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99695 * 2 1 4 4 H 1.48503 * 109.46962 * 264.47015 * 3 2 1 5 5 H 1.48495 * 109.47430 * 24.47093 * 3 2 1 6 6 H 1.48503 * 109.47237 * 144.47375 * 3 2 1 7 7 C 1.37874 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99541 * 357.38945 * 7 2 1 9 9 C 1.50694 * 120.00296 * 177.39706 * 7 2 1 10 10 C 1.53003 * 115.55147 * 86.91808 * 9 7 2 11 11 O 1.45197 * 109.46912 * 54.50258 * 10 9 7 12 12 C 1.34229 * 116.99602 * 176.06588 * 11 10 9 13 13 O 1.20821 * 120.00388 * 0.36972 * 12 11 10 14 14 C 1.50707 * 119.99801 * 180.37521 * 12 11 10 15 15 H 1.08994 * 109.46912 * 52.64339 * 14 12 11 16 16 O 1.42898 * 109.47116 * 172.64425 * 14 12 11 17 17 C 1.52999 * 109.46837 * 292.64261 * 14 12 11 18 18 C 1.50700 * 109.46931 * 184.09577 * 17 14 12 19 19 C 1.38243 * 120.00480 * 264.72255 * 18 17 14 20 20 C 1.38219 * 120.01101 * 179.77121 * 19 18 17 21 21 C 1.38261 * 120.02767 * 0.50402 * 20 19 18 22 22 C 1.38190 * 120.01525 * 359.74919 * 21 20 19 23 23 C 1.38329 * 120.01018 * 84.99541 * 18 17 14 24 24 Cl 1.73601 * 120.01118 * 359.96364 * 23 18 17 25 25 C 1.53004 * 117.49813 * 232.59203 * 9 7 2 26 26 C 1.53003 * 117.49493 * 301.25135 * 9 7 2 27 27 H 0.96998 * 120.00775 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47075 * 294.50651 * 10 9 7 29 29 H 1.08997 * 109.47123 * 174.50656 * 10 9 7 30 30 H 0.96702 * 113.99921 * 59.99264 * 16 14 12 31 31 H 1.08998 * 109.46982 * 304.09117 * 17 14 12 32 32 H 1.09001 * 109.47325 * 64.09403 * 17 14 12 33 33 H 1.07996 * 119.99154 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.98419 * 180.23141 * 20 19 18 35 35 H 1.07997 * 119.99376 * 179.76813 * 21 20 19 36 36 H 1.07993 * 120.01112 * 180.02562 * 22 21 20 37 37 H 1.08998 * 117.49256 * 215.00096 * 25 9 7 38 38 H 1.08991 * 117.49737 * 0.02562 * 25 9 7 39 39 H 1.08993 * 117.50426 * 359.97109 * 26 9 7 40 40 H 1.09004 * 117.49764 * 144.97480 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6133 1.9790 -1.3936 5 1 1.3930 2.6836 0.5799 6 1 3.4833 1.4768 0.8136 7 6 2.0045 -1.1940 -0.0005 8 1 1.4653 -2.1288 0.0417 9 6 3.5103 -1.1946 -0.0598 10 6 4.2239 -1.0900 1.2896 11 8 3.7493 -2.1419 2.1708 12 6 4.3375 -2.2409 3.3733 13 8 5.2151 -1.4699 3.6820 14 6 3.9034 -3.3139 4.3384 15 1 3.9366 -4.2838 3.8423 16 8 4.7821 -3.3250 5.4652 17 6 2.4753 -3.0298 4.8081 18 6 2.0774 -4.0450 5.8484 19 6 1.3725 -5.1750 5.4776 20 6 1.0116 -6.1085 6.4308 21 6 1.3461 -5.9077 7.7573 22 6 2.0461 -4.7760 8.1300 23 6 2.4123 -3.8436 7.1753 24 17 3.2920 -2.4218 7.6426 25 6 4.1742 -2.0432 -1.1462 26 6 4.1702 -0.5168 -1.2624 27 1 -0.4851 0.8400 0.0004 28 1 4.0139 -0.1187 1.7373 29 1 5.2985 -1.1972 1.1416 30 1 4.8035 -2.4917 5.9555 31 1 2.4267 -2.0299 5.2391 32 1 1.7942 -3.0932 3.9594 33 1 1.1075 -5.3304 4.4422 34 1 0.4643 -6.9929 6.1401 35 1 1.0606 -6.6356 8.5022 36 1 2.3077 -4.6194 9.1660 37 1 5.1193 -2.5269 -0.8995 38 1 3.5218 -2.6006 -1.8182 39 1 3.5153 -0.0709 -2.0108 40 1 5.1126 0.0039 -1.0921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849761441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:17 Heat of formation + Delta-G solvation = -107.936958 kcal Electronic energy + Delta-G solvation = -25066.093939 eV Core-core repulsion = 21258.050504 eV Total energy + Delta-G solvation = -3808.043434 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79641 -40.44341 -39.05863 -37.97679 -37.45436 -36.98198 -34.24518 -34.02665 -31.64094 -30.60936 -28.84036 -27.39607 -25.85722 -23.62522 -23.37348 -22.44179 -22.02537 -21.07093 -19.26839 -18.83193 -18.17727 -17.77058 -17.54757 -16.96583 -16.80430 -16.60530 -16.19647 -15.67771 -15.60314 -14.87599 -14.75633 -14.64300 -14.35521 -14.25979 -14.04247 -13.84133 -13.23826 -13.10475 -13.03697 -12.79473 -12.66265 -12.56975 -12.28785 -12.18976 -12.09618 -12.04859 -11.71704 -11.66581 -11.59746 -11.20393 -10.92821 -10.66635 -10.36974 -9.83657 -9.59527 -8.29461 -6.35099 0.19193 0.31903 1.01174 1.15183 1.31908 1.35448 1.42976 1.58848 2.33624 2.67657 3.01415 3.03583 3.11503 3.53644 3.70624 3.73092 3.82634 3.95890 3.99415 4.18217 4.19371 4.28912 4.35269 4.40212 4.44773 4.57117 4.62706 4.69116 4.80924 4.85426 4.97894 5.01950 5.15281 5.30455 5.43764 5.44697 5.48391 5.52088 5.66182 5.90816 6.21036 6.31581 6.64324 6.73353 7.33035 8.85811 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003531 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.927814 B = 7927.581382 C = 8229.980825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.925 3.075 4 H -0.256 1.256 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.474 4.474 8 H 0.041 0.959 9 C -0.038 4.038 10 C 0.107 3.893 11 O -0.334 6.334 12 C 0.425 3.575 13 O -0.540 6.540 14 C 0.138 3.862 15 H 0.159 0.841 16 O -0.532 6.532 17 C -0.111 4.111 18 C -0.080 4.080 19 C -0.110 4.110 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.036 4.036 24 Cl -0.077 7.077 25 C -0.154 4.154 26 C -0.183 4.183 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.380 0.620 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.144 0.856 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -11.313 14.745 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.171 4.171 3 Si 0.751 3.249 4 H -0.181 1.181 5 H -0.225 1.225 6 H -0.173 1.173 7 C -0.511 4.511 8 H 0.059 0.941 9 C -0.039 4.039 10 C 0.033 3.967 11 O -0.249 6.249 12 C 0.269 3.731 13 O -0.431 6.431 14 C 0.077 3.923 15 H 0.176 0.824 16 O -0.341 6.341 17 C -0.148 4.148 18 C -0.081 4.081 19 C -0.128 4.128 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.062 4.062 24 Cl -0.048 7.048 25 C -0.191 4.191 26 C -0.220 4.220 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.432 -11.414 14.636 19.339 hybrid contribution 0.024 2.094 0.022 2.094 sum 5.456 -9.320 14.657 18.206 Atomic orbital electron populations 1.70005 1.07968 1.27909 1.52383 1.25681 0.95153 1.02204 0.94021 0.86138 0.79414 0.79444 0.79941 1.18084 1.22530 1.17297 1.20275 0.88352 0.92933 1.49558 0.94110 1.19237 0.93598 1.04907 0.86183 1.22874 0.96681 0.87815 0.89310 1.86598 1.59781 1.52804 1.25694 1.25436 0.79320 0.85487 0.82873 1.90603 1.31403 1.43518 1.77556 1.21532 0.89245 0.97112 0.84440 0.82432 1.86638 1.66188 1.41006 1.40291 1.21204 0.95336 0.98863 0.99447 1.19437 0.99807 0.96848 0.91994 1.21353 0.97206 0.92688 1.01546 1.21605 0.98980 0.99607 0.92868 1.21511 0.96902 0.96861 0.97161 1.21300 0.99058 0.93615 0.99597 1.20961 1.00148 0.90756 0.94381 1.98325 1.74922 1.39906 1.91685 1.22924 1.01602 0.92395 1.02195 1.23081 1.01855 0.96451 1.00655 0.92571 0.93191 0.91337 0.76719 0.90608 0.87763 0.83842 0.82634 0.82119 0.83459 0.87786 0.89451 0.89654 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.93 43.48 25.03 68.60 1.72 45.20 16 4 H -0.26 -11.26 7.02 99.48 0.70 -10.56 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.25 -11.03 5.53 99.48 0.55 -10.48 16 7 C -0.47 -25.97 9.15 25.60 0.23 -25.74 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 9 C -0.04 -1.70 1.15 -52.93 -0.06 -1.77 16 10 C 0.11 4.51 5.22 71.98 0.38 4.89 16 11 O -0.33 -13.66 9.95 -51.41 -0.51 -14.17 16 12 C 0.42 15.44 7.27 71.24 0.52 15.96 16 13 O -0.54 -21.92 16.02 28.38 0.45 -21.47 16 14 C 0.14 3.90 3.58 29.85 0.11 4.00 16 15 H 0.16 3.78 8.14 -2.39 -0.02 3.76 16 16 O -0.53 -15.22 11.30 -130.00 -1.47 -16.69 16 17 C -0.11 -2.99 4.72 29.85 0.14 -2.85 16 18 C -0.08 -1.87 4.93 -19.84 -0.10 -1.97 16 19 C -0.11 -2.14 9.68 22.27 0.22 -1.92 16 20 C -0.11 -1.68 10.05 22.27 0.22 -1.46 16 21 C -0.11 -1.47 10.05 22.26 0.22 -1.25 16 22 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 23 C -0.04 -0.80 5.89 22.32 0.13 -0.67 16 24 Cl -0.08 -1.78 24.14 -2.72 -0.07 -1.84 16 25 C -0.15 -5.71 9.93 30.62 0.30 -5.41 16 26 C -0.18 -7.05 7.70 30.62 0.24 -6.81 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.05 2.26 6.16 -2.39 -0.01 2.24 16 29 H 0.07 2.59 8.01 -2.39 -0.02 2.57 16 30 H 0.38 10.66 6.24 -74.06 -0.46 10.20 16 31 H 0.08 2.18 7.13 -2.39 -0.02 2.17 16 32 H 0.10 2.95 8.05 -2.39 -0.02 2.93 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.08 3.46 7.28 -2.39 -0.02 3.44 16 40 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 Total: -1.00 -68.23 348.69 4.10 -64.13 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.44 Total: 26.63 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 3.23 Total: -24.81 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.30 Total: -56.98 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.53 Total: -52.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.72 Total: 45.20 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.84 kcal Total: -68.23 4.10 -64.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849761441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.802 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds