Wall clock time and date at job start Tue Mar 31 2020 14:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00245 * 2 1 4 4 O 1.20833 * 119.99134 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00335 * 180.02562 * 3 2 1 6 6 C 1.50704 * 109.47304 * 180.02562 * 5 3 2 7 7 S 1.70451 * 124.59687 * 269.96207 * 6 5 3 8 8 C 1.75499 * 92.45550 * 180.02562 * 7 6 5 9 9 C 1.32748 * 110.60030 * 359.71323 * 8 7 6 10 10 C 1.36101 * 124.59648 * 89.99418 * 6 5 3 11 11 C 1.47033 * 123.47835 * 359.96823 * 10 6 5 12 12 O 1.21563 * 119.99435 * 4.87483 * 11 10 6 13 13 O 1.34794 * 120.00318 * 184.86681 * 11 10 6 14 14 C 1.45202 * 116.99891 * 185.08512 * 13 11 10 15 15 C 1.53008 * 109.46917 * 184.91129 * 14 13 11 16 16 C 1.50703 * 115.54595 * 301.67203 * 15 14 13 17 17 H 1.07998 * 119.99923 * 95.22532 * 16 15 14 18 18 C 1.37878 * 120.00217 * 275.22284 * 16 15 14 19 19 N 1.31507 * 119.99596 * 5.68469 * 18 16 15 20 20 Si 1.86796 * 119.99868 * 185.68257 * 18 16 15 21 21 H 1.48504 * 109.46870 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47251 * 299.99722 * 20 18 16 23 23 H 1.48500 * 109.47228 * 60.00193 * 20 18 16 24 24 C 1.52995 * 117.50161 * 87.34118 * 15 14 13 25 25 C 1.52994 * 117.49841 * 156.00669 * 15 14 13 26 26 H 1.08997 * 109.47393 * 60.00247 * 1 2 3 27 27 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47094 * 299.99745 * 1 2 3 29 29 H 1.08996 * 109.47532 * 59.99719 * 5 3 2 30 30 H 1.09002 * 109.47208 * 299.99707 * 5 3 2 31 31 H 1.07992 * 124.69962 * 180.02562 * 8 7 6 32 32 H 1.07991 * 123.45793 * 180.24987 * 9 8 7 33 33 H 1.08993 * 109.47022 * 64.91155 * 14 13 11 34 34 H 1.09001 * 109.47410 * 304.90686 * 14 13 11 35 35 H 0.96997 * 120.00604 * 355.11803 * 19 18 16 36 36 H 1.08995 * 117.50017 * 215.00377 * 24 15 14 37 37 H 1.09004 * 117.49905 * 0.02869 * 24 15 14 38 38 H 1.08996 * 117.49967 * 359.96945 * 25 15 14 39 39 H 1.09005 * 117.49819 * 144.97427 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7201 0.0002 7 16 4.2683 3.6488 -1.4024 8 6 4.6902 5.0732 -0.4680 9 6 4.6089 4.8196 0.8325 10 6 4.2131 3.4605 1.1209 11 6 4.0572 2.9333 2.4846 12 8 3.8022 1.7572 2.6561 13 8 4.1972 3.7541 3.5446 14 6 4.1427 3.1451 4.8616 15 6 4.1963 4.2378 5.9314 16 6 5.4113 5.1285 5.8902 17 1 5.3704 6.0738 5.3697 18 6 6.5750 4.7366 6.5172 19 7 6.6613 3.5394 7.0546 20 14 8.0291 5.9060 6.6031 21 1 9.1499 5.2501 7.3233 22 1 8.4637 6.2575 5.2273 23 1 7.6299 7.1399 7.3266 24 6 2.8715 4.8696 6.3629 25 6 3.6057 3.9116 7.3045 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9557 0.7810 -0.8907 30 1 3.9564 0.7807 0.8892 31 1 4.9717 6.0256 -0.8922 32 1 4.8208 5.5529 1.5964 33 1 4.9914 2.4726 4.9863 34 1 3.2149 2.5821 4.9636 35 1 5.8845 2.9588 7.0727 36 1 2.8785 5.9295 6.6171 37 1 1.9615 4.5065 5.8851 38 1 3.1784 2.9189 7.4457 39 1 4.0960 4.3411 8.1782 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849786020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:31 Heat of formation + Delta-G solvation = -115.953563 kcal Electronic energy + Delta-G solvation = -25089.895172 eV Core-core repulsion = 21283.547818 eV Total energy + Delta-G solvation = -3806.347354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66184 -39.88462 -37.67281 -36.78921 -36.43371 -35.40218 -32.55542 -31.90801 -28.83102 -27.74703 -26.58647 -24.90599 -24.14410 -21.65456 -21.32528 -21.29087 -19.57055 -19.38651 -17.81924 -17.63522 -16.98060 -16.67734 -16.50682 -16.20241 -15.85529 -15.58132 -14.37922 -14.04753 -13.90782 -13.76604 -13.72909 -13.14882 -13.08033 -12.91882 -12.76646 -12.52332 -12.17277 -12.12783 -11.93218 -11.74697 -11.14293 -10.94576 -10.94302 -10.82002 -10.64913 -10.52440 -10.12164 -10.07630 -10.00866 -9.59257 -8.98999 -8.58317 -8.49939 -8.49465 -8.38325 -6.37508 -4.11121 0.56295 1.35115 1.75938 1.96944 2.12056 2.62253 3.32587 3.37029 3.42952 3.43961 3.62964 4.28204 4.49751 4.68658 4.81073 4.87384 4.93239 5.02036 5.06027 5.28993 5.33162 5.34598 5.46641 5.51485 5.77587 5.86326 6.01730 6.04620 6.10750 6.22778 6.26440 6.28340 6.44179 6.53940 6.77713 6.97392 7.16481 7.23038 7.62008 8.17009 8.29186 8.40878 8.83927 9.62576 11.01463 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003849 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.493910 B = 7272.603533 C = 8498.541846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.499 6.499 5 C -0.058 4.058 6 C -0.145 4.145 7 S 0.193 5.807 8 C -0.234 4.234 9 C -0.081 4.081 10 C -0.123 4.123 11 C 0.522 3.478 12 O -0.525 6.525 13 O -0.319 6.319 14 C 0.113 3.887 15 C 0.014 3.986 16 C -0.562 4.562 17 H 0.056 0.944 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 1.068 2.932 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.191 4.191 25 C -0.168 4.168 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.273 0.727 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 -3.631 -17.603 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.386 6.386 5 C -0.097 4.097 6 C -0.265 4.265 7 S 0.460 5.540 8 C -0.368 4.368 9 C -0.109 4.109 10 C -0.140 4.140 11 C 0.366 3.634 12 O -0.418 6.418 13 O -0.234 6.234 14 C 0.039 3.961 15 C 0.014 3.986 16 C -0.600 4.600 17 H 0.074 0.926 18 C -0.180 4.180 19 N -0.541 5.541 20 Si 0.896 3.104 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.228 4.228 25 C -0.206 4.206 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.169 0.831 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.773 -3.795 -18.552 19.797 hybrid contribution -1.842 0.112 1.222 2.213 sum -7.615 -3.683 -17.330 19.284 Atomic orbital electron populations 1.23264 0.76204 1.03653 1.02614 1.86480 1.23500 1.33135 1.84285 1.23332 0.91436 0.81535 0.72338 1.90693 1.66929 1.36221 1.44730 1.20020 0.88966 0.92148 1.08528 1.23721 1.05324 0.99517 0.97926 1.82779 1.63527 1.01314 1.06396 1.25434 1.11475 1.02887 0.97024 1.21401 0.98131 0.94836 0.96548 1.19450 1.09042 0.94725 0.90750 1.20415 0.73179 0.84156 0.85676 1.90701 1.46347 1.17786 1.86940 1.86638 1.81175 1.40044 1.15524 1.22914 0.99613 0.95827 0.77733 1.19058 0.93640 0.95923 0.90025 1.21192 0.96029 1.05284 1.37504 0.92571 1.25822 1.00660 0.98178 0.93326 1.70757 1.32927 1.07087 1.43337 0.83559 0.75543 0.74784 0.76526 1.20804 1.21357 1.21392 1.22916 0.95926 0.98293 1.05646 1.22791 1.04255 0.98193 0.95316 0.91946 0.88030 0.91785 0.86490 0.83113 0.80971 0.81834 0.91379 0.93898 0.91626 0.89716 0.91345 0.91259 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.52 10.57 -39.27 -0.41 -4.94 16 3 C 0.47 6.80 7.95 36.00 0.29 7.08 16 4 O -0.50 -8.48 15.78 -18.76 -0.30 -8.78 16 5 C -0.06 -0.74 5.60 -29.04 -0.16 -0.90 16 6 C -0.15 -2.07 4.84 -35.07 -0.17 -2.24 16 7 S 0.19 2.11 22.97 -107.50 -2.47 -0.36 16 8 C -0.23 -2.72 11.12 28.85 0.32 -2.39 16 9 C -0.08 -1.21 10.14 -39.01 -0.40 -1.60 16 10 C -0.12 -2.10 5.98 -104.65 -0.63 -2.72 16 11 C 0.52 10.70 7.91 34.30 0.27 10.97 16 12 O -0.52 -11.08 13.75 -19.31 -0.27 -11.35 16 13 O -0.32 -7.30 9.77 -40.75 -0.40 -7.70 16 14 C 0.11 2.68 5.37 37.16 0.20 2.88 16 15 C 0.01 0.35 1.22 -155.66 -0.19 0.16 16 16 C -0.56 -15.44 8.65 -34.44 -0.30 -15.73 16 17 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 18 C 0.03 0.70 5.39 -17.82 -0.10 0.61 16 19 N -0.91 -26.43 13.57 55.43 0.75 -25.68 16 20 Si 1.07 24.63 29.91 -169.99 -5.08 19.55 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.19 -4.20 9.94 -26.69 -0.27 -4.47 16 25 C -0.17 -3.84 8.66 -26.69 -0.23 -4.07 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 29 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.15 2.15 5.84 -51.93 -0.30 1.84 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.16 2.46 8.06 -52.49 -0.42 2.03 16 33 H 0.07 1.73 7.87 -51.93 -0.41 1.32 16 34 H 0.04 0.96 7.94 -51.93 -0.41 0.55 16 35 H 0.27 7.87 6.18 -40.82 -0.25 7.62 16 36 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -33.13 357.83 -7.88 -41.01 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.81 Total: 3.86 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.29 Total: -11.01 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.75 Total: -25.68 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.37 Total: -32.76 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.55 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.47 Total: -0.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.13 -7.88 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849786020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.946 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds