Wall clock time and date at job start Tue Mar 31 2020 14:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00245 * 2 1 4 4 O 1.20833 * 119.99134 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00335 * 180.02562 * 3 2 1 6 6 C 1.50704 * 109.47304 * 180.02562 * 5 3 2 7 7 S 1.70451 * 124.59687 * 269.96207 * 6 5 3 8 8 C 1.75499 * 92.45550 * 180.02562 * 7 6 5 9 9 C 1.32748 * 110.60030 * 359.71323 * 8 7 6 10 10 C 1.36101 * 124.59648 * 89.99418 * 6 5 3 11 11 C 1.47033 * 123.47835 * 359.96823 * 10 6 5 12 12 O 1.21563 * 119.99435 * 4.87483 * 11 10 6 13 13 O 1.34794 * 120.00318 * 184.86681 * 11 10 6 14 14 C 1.45202 * 116.99891 * 185.08512 * 13 11 10 15 15 C 1.53008 * 109.46917 * 184.91129 * 14 13 11 16 16 C 1.50703 * 115.54595 * 301.67203 * 15 14 13 17 17 H 1.07998 * 119.99923 * 95.22532 * 16 15 14 18 18 C 1.37878 * 120.00217 * 275.22284 * 16 15 14 19 19 N 1.31507 * 119.99596 * 5.68469 * 18 16 15 20 20 Si 1.86796 * 119.99868 * 185.68257 * 18 16 15 21 21 H 1.48504 * 109.46870 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47251 * 299.99722 * 20 18 16 23 23 H 1.48500 * 109.47228 * 60.00193 * 20 18 16 24 24 C 1.52995 * 117.50161 * 87.34118 * 15 14 13 25 25 C 1.52994 * 117.49841 * 156.00669 * 15 14 13 26 26 H 1.08997 * 109.47393 * 60.00247 * 1 2 3 27 27 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47094 * 299.99745 * 1 2 3 29 29 H 1.08996 * 109.47532 * 59.99719 * 5 3 2 30 30 H 1.09002 * 109.47208 * 299.99707 * 5 3 2 31 31 H 1.07992 * 124.69962 * 180.02562 * 8 7 6 32 32 H 1.07991 * 123.45793 * 180.24987 * 9 8 7 33 33 H 1.08993 * 109.47022 * 64.91155 * 14 13 11 34 34 H 1.09001 * 109.47410 * 304.90686 * 14 13 11 35 35 H 0.96997 * 120.00604 * 355.11803 * 19 18 16 36 36 H 1.08995 * 117.50017 * 215.00377 * 24 15 14 37 37 H 1.09004 * 117.49905 * 0.02869 * 24 15 14 38 38 H 1.08996 * 117.49967 * 359.96945 * 25 15 14 39 39 H 1.09005 * 117.49819 * 144.97427 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7201 0.0002 7 16 4.2683 3.6488 -1.4024 8 6 4.6902 5.0732 -0.4680 9 6 4.6089 4.8196 0.8325 10 6 4.2131 3.4605 1.1209 11 6 4.0572 2.9333 2.4846 12 8 3.8022 1.7572 2.6561 13 8 4.1972 3.7541 3.5446 14 6 4.1427 3.1451 4.8616 15 6 4.1963 4.2378 5.9314 16 6 5.4113 5.1285 5.8902 17 1 5.3704 6.0738 5.3697 18 6 6.5750 4.7366 6.5172 19 7 6.6613 3.5394 7.0546 20 14 8.0291 5.9060 6.6031 21 1 9.1499 5.2501 7.3233 22 1 8.4637 6.2575 5.2273 23 1 7.6299 7.1399 7.3266 24 6 2.8715 4.8696 6.3629 25 6 3.6057 3.9116 7.3045 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9557 0.7810 -0.8907 30 1 3.9564 0.7807 0.8892 31 1 4.9717 6.0256 -0.8922 32 1 4.8208 5.5529 1.5964 33 1 4.9914 2.4726 4.9863 34 1 3.2149 2.5821 4.9636 35 1 5.8845 2.9588 7.0727 36 1 2.8785 5.9295 6.6171 37 1 1.9615 4.5065 5.8851 38 1 3.1784 2.9189 7.4457 39 1 4.0960 4.3411 8.1782 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849786020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:30 Heat of formation + Delta-G solvation = -133.952063 kcal Electronic energy + Delta-G solvation = -25090.675646 eV Core-core repulsion = 21283.547818 eV Total energy + Delta-G solvation = -3807.127828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84903 -41.33248 -39.18368 -38.27666 -37.53597 -37.09251 -33.99961 -33.60758 -29.99925 -29.05174 -27.88718 -26.94621 -25.44168 -23.23598 -22.80393 -22.34367 -21.52987 -20.78645 -18.97079 -18.87197 -18.68010 -17.97055 -17.76586 -17.39517 -17.24251 -17.10566 -16.02764 -15.62643 -15.29326 -15.02068 -14.86240 -14.74930 -14.53903 -14.19594 -14.00268 -13.94804 -13.74691 -13.57528 -13.01676 -12.88156 -12.82780 -12.65184 -12.32707 -12.16540 -11.94419 -11.90184 -11.84963 -11.77254 -11.66493 -11.34198 -10.54020 -10.49576 -10.40397 -10.02617 -9.48943 -8.56721 -6.30457 -0.58030 0.35393 0.73806 0.76515 1.02325 1.55128 1.61852 1.62231 1.79681 1.81740 2.01413 2.58468 3.15473 3.19485 3.25118 3.63411 3.71445 3.90833 3.92741 4.12703 4.15310 4.22956 4.23290 4.25806 4.37836 4.42131 4.46829 4.57697 4.63135 4.73772 4.84050 4.92208 5.00905 5.15159 5.16581 5.22744 5.35370 5.50053 6.11739 6.20705 6.55749 6.62358 6.69370 7.50255 8.83327 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003849 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.493910 B = 7272.603533 C = 8498.541846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.472 3.528 4 O -0.531 6.531 5 C -0.061 4.061 6 C -0.156 4.156 7 S 0.288 5.712 8 C -0.221 4.221 9 C -0.111 4.111 10 C -0.164 4.164 11 C 0.513 3.487 12 O -0.542 6.542 13 O -0.336 6.336 14 C 0.125 3.875 15 C -0.020 4.020 16 C -0.572 4.572 17 H 0.045 0.955 18 C -0.019 4.019 19 N -0.931 5.931 20 Si 1.110 2.890 21 H -0.285 1.285 22 H -0.273 1.273 23 H -0.270 1.270 24 C -0.169 4.169 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.050 0.950 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.209 0.791 32 H 0.150 0.850 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -3.154 -20.312 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.421 6.421 5 C -0.100 4.100 6 C -0.276 4.276 7 S 0.556 5.444 8 C -0.356 4.356 9 C -0.138 4.138 10 C -0.181 4.181 11 C 0.359 3.641 12 O -0.436 6.436 13 O -0.252 6.252 14 C 0.051 3.949 15 C -0.021 4.021 16 C -0.609 4.609 17 H 0.064 0.936 18 C -0.219 4.219 19 N -0.567 5.567 20 Si 0.933 3.067 21 H -0.211 1.211 22 H -0.199 1.199 23 H -0.195 1.195 24 C -0.206 4.206 25 C -0.199 4.199 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.069 0.931 29 H 0.179 0.821 30 H 0.152 0.848 31 H 0.226 0.774 32 H 0.167 0.833 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.048 -3.327 -21.279 22.371 hybrid contribution -1.859 -0.096 1.882 2.646 sum -7.907 -3.422 -19.398 21.225 Atomic orbital electron populations 1.23576 0.74526 1.05917 1.02435 1.86476 1.25198 1.32212 1.83730 1.23603 0.91954 0.81526 0.71423 1.90672 1.67712 1.37230 1.46462 1.20144 0.88218 0.91786 1.09824 1.24151 1.03939 1.00464 0.99023 1.82471 1.60209 0.98820 1.02904 1.25897 1.08825 1.04829 0.96049 1.21291 1.00673 0.93997 0.97857 1.19442 1.12952 0.96449 0.89266 1.21143 0.72463 0.84004 0.86448 1.90671 1.47351 1.18295 1.87293 1.86634 1.81951 1.40910 1.15665 1.22566 0.98653 0.95088 0.78579 1.19156 0.94465 0.96994 0.91480 1.21422 0.97341 1.05186 1.36973 0.93630 1.27117 1.03373 0.98733 0.92678 1.70858 1.32707 1.08003 1.45163 0.83016 0.72740 0.73629 0.77348 1.21079 1.19890 1.19532 1.22932 0.95259 0.98361 1.04098 1.22730 1.03929 0.99304 0.93931 0.91016 0.84600 0.93114 0.82079 0.84850 0.77448 0.83252 0.94215 0.93094 0.92654 0.89386 0.89292 0.89488 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -8.68 10.57 -51.47 -0.54 -9.23 16 3 C 0.47 13.18 7.95 71.23 0.57 13.74 16 4 O -0.53 -17.78 15.78 21.94 0.35 -17.43 16 5 C -0.06 -1.50 5.60 29.10 0.16 -1.34 16 6 C -0.16 -4.24 4.84 25.19 0.12 -4.12 16 7 S 0.29 5.30 22.97 -56.49 -1.30 4.00 16 8 C -0.22 -4.54 11.12 66.64 0.74 -3.80 16 9 C -0.11 -3.27 10.14 22.68 0.23 -3.04 16 10 C -0.16 -5.65 5.98 -19.88 -0.12 -5.77 16 11 C 0.51 21.99 7.91 70.13 0.55 22.55 16 12 O -0.54 -23.93 13.75 19.63 0.27 -23.66 16 13 O -0.34 -16.12 9.77 -57.06 -0.56 -16.68 16 14 C 0.13 6.21 5.37 71.98 0.39 6.60 16 15 C -0.02 -1.04 1.22 -52.93 -0.06 -1.10 16 16 C -0.57 -32.12 8.65 25.60 0.22 -31.90 16 17 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 18 C -0.02 -1.10 5.39 84.66 0.46 -0.64 16 19 N -0.93 -55.75 13.57 21.45 0.29 -55.46 16 20 Si 1.11 49.94 29.91 68.60 2.05 51.99 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.17 -7.42 9.94 30.62 0.30 -7.12 16 25 C -0.16 -7.45 8.66 30.62 0.27 -7.18 16 26 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 27 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 29 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.13 3.83 5.84 -2.39 -0.01 3.82 16 31 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.15 4.68 8.06 -2.92 -0.02 4.66 16 33 H 0.04 2.14 7.87 -2.39 -0.02 2.12 16 34 H 0.05 2.37 7.94 -2.39 -0.02 2.35 16 35 H 0.26 15.78 6.18 -92.71 -0.57 15.20 16 36 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.08 3.70 8.14 -2.38 -0.02 3.68 16 Total: -1.00 -74.58 357.83 6.85 -67.72 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.27 Total: 20.17 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.02 Total: -21.42 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.29 Total: -55.46 kcal Atomic # 8 Polarization: -66.51 SS G_CDS: -0.48 Total: -67.00 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 51.99 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.30 Total: 4.00 kcal Total: -74.58 6.85 -67.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849786020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.231 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds