Wall clock time and date at job start Tue Mar 31 2020 14:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48496 * 109.47234 * 239.99845 * 3 2 1 5 5 H 1.48499 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47269 * 119.99981 * 3 2 1 7 7 C 1.38633 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99849 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.35777 * 117.00473 * 174.97675 * 9 7 2 11 11 C 1.38734 * 120.08579 * 5.20299 * 10 9 7 12 12 C 1.38339 * 119.97994 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.93034 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.14965 * 359.74692 * 12 11 10 15 15 C 1.38198 * 120.17003 * 0.50636 * 14 12 11 16 16 C 1.38692 * 120.02412 * 359.49186 * 15 14 12 17 17 N 1.40135 * 120.07483 * 180.27421 * 16 15 14 18 18 C 1.34777 * 119.99955 * 24.77305 * 17 16 15 19 19 O 1.21586 * 120.00169 * 5.66671 * 18 17 16 20 20 N 1.34783 * 119.99561 * 185.66632 * 18 17 16 21 21 C 1.47065 * 136.06214 * 359.63233 * 20 18 17 22 22 C 1.53233 * 88.08295 * 207.20209 * 21 20 18 23 23 C 1.50702 * 114.32531 * 220.46898 * 22 21 20 24 24 O 1.20820 * 119.99904 * 93.75780 * 23 22 21 25 25 O 1.34228 * 119.99960 * 273.76261 * 23 22 21 26 26 C 1.47063 * 136.05275 * 179.97438 * 20 18 17 27 27 H 0.96997 * 119.99792 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.01480 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.91811 * 180.25890 * 14 12 11 30 30 H 1.08003 * 119.98647 * 179.77207 * 15 14 12 31 31 H 0.97005 * 119.99930 * 204.77083 * 17 16 15 32 32 H 1.09003 * 113.46623 * 321.94107 * 21 20 18 33 33 H 1.09003 * 113.46749 * 92.37040 * 21 20 18 34 34 H 1.08997 * 114.19774 * 87.72731 * 22 21 20 35 35 H 0.96705 * 117.00075 * 179.97438 * 25 23 22 36 36 H 1.08997 * 113.47154 * 267.62518 * 26 20 18 37 37 H 1.09001 * 113.46801 * 38.01586 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2124 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3681 -0.0005 10 6 2.0704 -3.5045 -0.1070 11 6 3.4562 -3.4392 -0.1009 12 6 4.2033 -4.5983 -0.2100 13 9 5.5528 -4.5335 -0.2044 14 6 3.5709 -5.8261 -0.3203 15 6 2.1908 -5.8979 -0.3323 16 6 1.4347 -4.7403 -0.2233 17 7 0.0353 -4.8124 -0.2295 18 6 -0.5828 -5.9466 0.1553 19 8 0.0670 -6.8705 0.6052 20 7 -1.9213 -6.0565 0.0415 21 6 -3.0184 -5.1970 -0.4281 22 6 -3.9512 -5.9568 0.5209 23 6 -5.3117 -6.2563 -0.0540 24 8 -5.5171 -7.3142 -0.6002 25 8 -6.2952 -5.3478 0.0408 26 6 -2.9281 -7.0867 0.3380 27 1 -0.4850 0.8400 -0.0004 28 1 3.9516 -2.4836 -0.0117 29 1 4.1578 -6.7290 -0.4011 30 1 1.7009 -6.8562 -0.4221 31 1 -0.4886 -4.0460 -0.5109 32 1 -2.8918 -4.1475 -0.1621 33 1 -3.2608 -5.3391 -1.4813 34 1 -3.9905 -5.5483 1.5306 35 1 -7.1505 -5.5850 -0.3431 36 1 -3.1464 -7.7369 -0.5092 37 1 -2.7246 -7.6417 1.2537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853093964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:27 Heat of formation + Delta-G solvation = -110.399597 kcal Electronic energy + Delta-G solvation = -26663.686446 eV Core-core repulsion = 22323.659505 eV Total energy + Delta-G solvation = -4340.026941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.24049 -41.34254 -40.17718 -39.16537 -37.95172 -36.42059 -36.21237 -34.10339 -32.42663 -30.70801 -29.36816 -28.10477 -26.29625 -25.54912 -24.91163 -22.48813 -21.66962 -20.85327 -19.51167 -18.62137 -18.36473 -18.23583 -17.63502 -17.21703 -16.82155 -16.09494 -15.46634 -15.31550 -15.22862 -14.95443 -14.80474 -14.32488 -14.11782 -13.84011 -13.62175 -13.45863 -13.28234 -13.13197 -12.93502 -12.54990 -12.28241 -12.18490 -11.89425 -11.68695 -11.42922 -11.18825 -11.00465 -10.90485 -10.76312 -10.58631 -9.95853 -9.80771 -9.54368 -8.97717 -8.88024 -7.87721 -7.07126 -6.62519 -4.20120 1.77202 1.82550 2.11064 2.24966 2.79006 3.06346 3.06870 3.09280 3.34582 3.71506 3.83142 3.98208 4.35476 4.49840 4.73189 4.84766 4.93130 4.94834 5.09313 5.12426 5.20805 5.32529 5.46577 5.57909 5.69536 5.74309 6.01712 6.13212 6.19336 6.56703 6.67813 6.89928 6.92345 7.03803 7.16574 7.30661 7.52776 7.64383 7.81663 8.11402 8.71023 8.83861 9.44408 10.54651 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003802 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.815741 B = 7363.383994 C = 9926.169810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.154 3.846 11 C -0.255 4.255 12 C 0.125 3.875 13 F -0.152 7.152 14 C -0.223 4.223 15 C -0.062 4.062 16 C 0.082 3.918 17 N -0.658 5.658 18 C 0.739 3.261 19 O -0.574 6.574 20 N -0.665 5.665 21 C 0.117 3.883 22 C -0.129 4.129 23 C 0.498 3.502 24 O -0.511 6.511 25 O -0.510 6.510 26 C 0.149 3.851 27 H 0.272 0.728 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.414 0.586 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.142 0.858 35 H 0.412 0.588 36 H 0.098 0.902 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -7.633 -1.034 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.098 3.902 11 C -0.276 4.276 12 C 0.105 3.895 13 F -0.130 7.130 14 C -0.243 4.243 15 C -0.083 4.083 16 C -0.013 4.013 17 N -0.303 5.303 18 C 0.443 3.557 19 O -0.452 6.452 20 N -0.406 5.406 21 C -0.006 4.006 22 C -0.149 4.149 23 C 0.339 3.661 24 O -0.398 6.398 25 O -0.322 6.322 26 C 0.025 3.975 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.166 0.834 31 H 0.250 0.750 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.160 0.840 35 H 0.271 0.729 36 H 0.116 0.884 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.775 -8.238 -0.657 12.053 hybrid contribution -0.149 1.204 -0.358 1.265 sum -8.924 -7.033 -1.015 11.408 Atomic orbital electron populations 1.69989 1.05926 1.28092 1.45563 1.25262 0.95909 0.98803 0.96140 0.85751 0.78758 0.79444 0.79408 1.19357 1.20193 1.19375 1.21297 0.91976 0.80378 1.53153 0.88870 1.83905 1.33926 1.11268 1.78315 1.18685 0.89503 0.87044 0.94930 1.20823 0.93297 0.98468 1.14983 1.17458 0.75959 0.94324 1.01802 1.91411 1.30123 1.97376 1.94135 1.20494 0.94557 0.95804 1.13488 1.20800 0.92253 0.97651 0.97605 1.16696 0.80895 0.91849 1.11873 1.42157 1.05303 1.15044 1.67840 1.15037 0.78726 0.83297 0.78611 1.90875 1.62295 1.40097 1.51931 1.48356 1.03278 1.20133 1.68816 1.22805 0.82188 0.97595 0.98054 1.22848 0.87279 1.01774 1.03036 1.22877 0.86280 0.81060 0.75869 1.90748 1.82634 1.25635 1.40830 1.84561 1.24305 1.47955 1.75334 1.22688 0.80826 0.90883 1.03079 0.91793 0.83906 0.85896 0.83399 0.75023 0.88279 0.89092 0.83994 0.72879 0.88375 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.97 13.67 55.48 0.76 -22.21 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.19 9.49 30.88 0.29 -9.89 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.40 9.17 0.03 0.00 -4.40 16 10 C 0.15 3.53 6.66 -38.94 -0.26 3.27 16 11 C -0.25 -5.53 9.14 -39.36 -0.36 -5.89 16 12 C 0.12 2.49 7.29 -39.43 -0.29 2.20 16 13 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 14 C -0.22 -4.18 10.02 -39.48 -0.40 -4.57 16 15 C -0.06 -1.22 8.71 -39.43 -0.34 -1.56 16 16 C 0.08 1.71 6.45 -83.44 -0.54 1.17 16 17 N -0.66 -12.28 5.29 -14.07 -0.07 -12.36 16 18 C 0.74 13.03 8.60 -86.91 -0.75 12.28 16 19 O -0.57 -11.63 14.29 5.29 0.08 -11.56 16 20 N -0.67 -8.87 3.69 -191.20 -0.71 -9.58 16 21 C 0.12 1.16 7.85 -8.65 -0.07 1.10 16 22 C -0.13 -1.10 4.59 -91.38 -0.42 -1.52 16 23 C 0.50 4.27 7.90 36.01 0.28 4.55 16 24 O -0.51 -5.77 16.70 -18.75 -0.31 -6.08 16 25 O -0.51 -3.36 13.42 -39.25 -0.53 -3.89 16 26 C 0.15 1.55 7.97 -8.50 -0.07 1.48 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.14 3.08 5.63 -52.48 -0.30 2.79 16 29 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 30 H 0.15 2.85 5.78 -52.48 -0.30 2.54 16 31 H 0.41 7.48 8.07 -40.82 -0.33 7.15 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 0.99 9.10 45.56 0.41 1.41 16 36 H 0.10 1.01 7.45 -51.93 -0.39 0.62 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -32.43 334.70 -6.15 -38.59 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -2.42 Total: 11.30 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -3.01 Total: 3.64 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.02 Total: -44.14 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.76 Total: -25.92 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.43 -6.15 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853093964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.813 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds