Wall clock time and date at job start Tue Mar 31 2020 14:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48496 * 109.47234 * 239.99845 * 3 2 1 5 5 H 1.48499 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47269 * 119.99981 * 3 2 1 7 7 C 1.38633 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99849 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.35777 * 117.00473 * 174.97675 * 9 7 2 11 11 C 1.38734 * 120.08579 * 5.20299 * 10 9 7 12 12 C 1.38339 * 119.97994 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.93034 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.14965 * 359.74692 * 12 11 10 15 15 C 1.38198 * 120.17003 * 0.50636 * 14 12 11 16 16 C 1.38692 * 120.02412 * 359.49186 * 15 14 12 17 17 N 1.40135 * 120.07483 * 180.27421 * 16 15 14 18 18 C 1.34777 * 119.99955 * 24.77305 * 17 16 15 19 19 O 1.21586 * 120.00169 * 5.66671 * 18 17 16 20 20 N 1.34783 * 119.99561 * 185.66632 * 18 17 16 21 21 C 1.47065 * 136.06214 * 359.63233 * 20 18 17 22 22 C 1.53233 * 88.08295 * 207.20209 * 21 20 18 23 23 C 1.50702 * 114.32531 * 220.46898 * 22 21 20 24 24 O 1.20820 * 119.99904 * 93.75780 * 23 22 21 25 25 O 1.34228 * 119.99960 * 273.76261 * 23 22 21 26 26 C 1.47063 * 136.05275 * 179.97438 * 20 18 17 27 27 H 0.96997 * 119.99792 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.01480 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.91811 * 180.25890 * 14 12 11 30 30 H 1.08003 * 119.98647 * 179.77207 * 15 14 12 31 31 H 0.97005 * 119.99930 * 204.77083 * 17 16 15 32 32 H 1.09003 * 113.46623 * 321.94107 * 21 20 18 33 33 H 1.09003 * 113.46749 * 92.37040 * 21 20 18 34 34 H 1.08997 * 114.19774 * 87.72731 * 22 21 20 35 35 H 0.96705 * 117.00075 * 179.97438 * 25 23 22 36 36 H 1.08997 * 113.47154 * 267.62518 * 26 20 18 37 37 H 1.09001 * 113.46801 * 38.01586 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2124 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3681 -0.0005 10 6 2.0704 -3.5045 -0.1070 11 6 3.4562 -3.4392 -0.1009 12 6 4.2033 -4.5983 -0.2100 13 9 5.5528 -4.5335 -0.2044 14 6 3.5709 -5.8261 -0.3203 15 6 2.1908 -5.8979 -0.3323 16 6 1.4347 -4.7403 -0.2233 17 7 0.0353 -4.8124 -0.2295 18 6 -0.5828 -5.9466 0.1553 19 8 0.0670 -6.8705 0.6052 20 7 -1.9213 -6.0565 0.0415 21 6 -3.0184 -5.1970 -0.4281 22 6 -3.9512 -5.9568 0.5209 23 6 -5.3117 -6.2563 -0.0540 24 8 -5.5171 -7.3142 -0.6002 25 8 -6.2952 -5.3478 0.0408 26 6 -2.9281 -7.0867 0.3380 27 1 -0.4850 0.8400 -0.0004 28 1 3.9516 -2.4836 -0.0117 29 1 4.1578 -6.7290 -0.4011 30 1 1.7009 -6.8562 -0.4221 31 1 -0.4886 -4.0460 -0.5109 32 1 -2.8918 -4.1475 -0.1621 33 1 -3.2608 -5.3391 -1.4813 34 1 -3.9905 -5.5483 1.5306 35 1 -7.1505 -5.5850 -0.3431 36 1 -3.1464 -7.7369 -0.5092 37 1 -2.7246 -7.6417 1.2537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853093964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:27 Heat of formation + Delta-G solvation = -132.828677 kcal Electronic energy + Delta-G solvation = -26664.659044 eV Core-core repulsion = 22323.659505 eV Total energy + Delta-G solvation = -4340.999539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.81210 -42.30377 -41.43905 -40.47499 -39.22206 -37.88386 -37.05982 -35.61221 -34.29283 -31.88618 -30.99482 -29.56209 -27.40582 -27.15763 -25.89951 -24.07468 -23.18963 -21.86947 -20.66628 -20.14153 -19.69470 -19.27906 -18.96361 -18.32205 -18.08852 -17.11507 -17.00860 -16.80937 -16.62035 -16.38513 -16.09600 -15.93419 -15.49054 -15.29844 -15.13162 -14.85216 -14.59053 -14.11813 -13.98097 -13.81302 -13.71716 -13.43948 -13.31361 -13.03565 -12.59496 -12.55604 -12.36867 -12.16128 -12.01204 -11.71659 -11.62953 -11.41412 -11.07156 -10.80570 -9.98841 -9.53847 -8.69820 -8.49467 -6.15271 0.20205 0.46011 1.06827 1.15728 1.39148 1.47021 1.52335 1.85199 2.14584 2.17813 2.64825 2.70783 3.02148 3.07011 3.17177 3.45665 3.63499 3.93576 4.00650 4.11377 4.20207 4.32814 4.35397 4.39569 4.49287 4.57435 4.68789 4.92147 4.94976 5.02375 5.22431 5.28984 5.36302 5.52782 5.59426 5.94592 5.98790 6.05876 6.76216 6.95068 6.98522 7.31581 7.62937 8.70675 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003802 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.815741 B = 7363.383994 C = 9926.169810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.006 4.006 3 Si 1.010 2.990 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.203 6.203 10 C 0.129 3.871 11 C -0.260 4.260 12 C 0.119 3.881 13 F -0.145 7.145 14 C -0.199 4.199 15 C -0.064 4.064 16 C 0.083 3.917 17 N -0.661 5.661 18 C 0.736 3.264 19 O -0.605 6.605 20 N -0.668 5.668 21 C 0.115 3.885 22 C -0.111 4.111 23 C 0.511 3.489 24 O -0.539 6.539 25 O -0.506 6.506 26 C 0.145 3.855 27 H 0.275 0.725 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.414 0.586 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.158 0.842 35 H 0.432 0.568 36 H 0.103 0.897 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 -8.110 -1.126 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.206 4.206 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.108 6.108 10 C 0.075 3.925 11 C -0.280 4.280 12 C 0.099 3.901 13 F -0.123 7.123 14 C -0.219 4.219 15 C -0.085 4.085 16 C -0.013 4.013 17 N -0.306 5.306 18 C 0.440 3.560 19 O -0.485 6.485 20 N -0.407 5.407 21 C -0.008 4.008 22 C -0.131 4.131 23 C 0.353 3.647 24 O -0.429 6.429 25 O -0.319 6.319 26 C 0.022 3.978 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.250 0.750 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.175 0.825 35 H 0.294 0.706 36 H 0.120 0.880 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.039 -8.743 -0.758 12.599 hybrid contribution -0.130 1.130 -0.347 1.189 sum -9.169 -7.613 -1.105 11.969 Atomic orbital electron populations 1.70094 1.07429 1.29052 1.47404 1.26329 0.96841 1.01947 0.95484 0.84761 0.77594 0.74976 0.79702 1.18512 1.19406 1.18730 1.21699 0.92539 0.81092 1.53969 0.88394 1.83884 1.34657 1.11779 1.80480 1.19003 0.90149 0.87164 0.96188 1.20909 0.93197 0.99120 1.14815 1.17442 0.76256 0.94199 1.02250 1.91428 1.29454 1.97347 1.94098 1.20872 0.94407 0.96500 1.10122 1.20973 0.92636 0.97406 0.97490 1.16944 0.82194 0.91573 1.10575 1.42172 1.04666 1.15630 1.68149 1.15112 0.80007 0.82434 0.78405 1.90831 1.63630 1.40756 1.53304 1.48394 1.02437 1.22031 1.67806 1.23023 0.80995 0.97411 0.99331 1.22681 0.86976 1.00039 1.03433 1.22631 0.86420 0.80652 0.75020 1.90753 1.83152 1.26861 1.42133 1.84514 1.25154 1.47152 1.75111 1.22878 0.80242 0.91139 1.03494 0.91563 0.84428 0.82496 0.82647 0.74982 0.88238 0.87583 0.82454 0.70554 0.87953 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.38 13.67 21.61 0.30 -49.09 16 2 C -0.01 -0.31 5.49 84.83 0.47 0.15 16 3 Si 1.01 39.89 29.55 68.60 2.03 41.92 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.42 -22.30 9.49 67.91 0.64 -21.66 16 8 H 0.10 4.92 5.20 -2.91 -0.02 4.91 16 9 O -0.20 -10.81 9.17 -22.80 -0.21 -11.02 16 10 C 0.13 6.02 6.66 22.68 0.15 6.17 16 11 C -0.26 -11.35 9.14 22.41 0.20 -11.14 16 12 C 0.12 4.59 7.29 22.37 0.16 4.75 16 13 F -0.14 -5.27 17.26 44.97 0.78 -4.49 16 14 C -0.20 -7.01 10.02 22.33 0.22 -6.79 16 15 C -0.06 -2.44 8.71 22.37 0.19 -2.25 16 16 C 0.08 3.48 6.45 38.22 0.25 3.72 16 17 N -0.66 -24.97 5.29 -316.70 -1.68 -26.65 16 18 C 0.74 25.82 8.60 179.05 1.54 27.36 16 19 O -0.60 -24.28 14.29 -3.99 -0.06 -24.33 16 20 N -0.67 -17.30 3.69 -877.09 -3.24 -20.54 16 21 C 0.12 2.14 7.85 83.09 0.65 2.79 16 22 C -0.11 -1.69 4.59 -11.29 -0.05 -1.74 16 23 C 0.51 7.70 7.90 71.24 0.56 8.26 16 24 O -0.54 -11.28 16.70 21.98 0.37 -10.91 16 25 O -0.51 -5.40 13.42 -51.39 -0.69 -6.09 16 26 C 0.14 2.83 7.97 83.18 0.66 3.50 16 27 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.14 6.06 5.63 -2.91 -0.02 6.05 16 29 H 0.16 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.16 5.77 5.78 -2.91 -0.02 5.76 16 31 H 0.41 15.40 8.07 -92.70 -0.75 14.65 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.43 0.97 9.10 -74.05 -0.67 0.30 16 36 H 0.10 1.97 7.45 -2.39 -0.02 1.95 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.59 334.70 3.02 -67.57 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.24 Total: 30.50 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.66 Total: 13.13 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -4.62 Total: -96.27 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.59 Total: -52.35 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -70.59 3.02 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853093964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.255 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds