Wall clock time and date at job start Tue Mar 31 2020 14:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47077 * 270.00206 * 3 2 1 5 5 H 1.48501 * 109.47236 * 29.99801 * 3 2 1 6 6 H 1.48496 * 109.47443 * 149.99945 * 3 2 1 7 7 C 1.37875 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99755 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00058 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46814 * 180.02562 * 9 7 2 11 11 C 1.38893 * 119.99844 * 179.97438 * 10 9 7 12 12 C 1.39331 * 119.90671 * 359.97438 * 11 10 9 13 13 C 1.36520 * 120.09994 * 180.02562 * 12 11 10 14 14 C 1.40129 * 119.90152 * 0.02562 * 13 12 11 15 15 C 1.46749 * 120.09682 * 179.97438 * 14 13 12 16 16 O 1.21305 * 120.00180 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99886 * 359.97438 * 15 14 13 18 18 C 1.52992 * 117.49843 * 223.61889 * 17 15 14 19 19 C 1.53000 * 117.49728 * 154.99433 * 17 15 14 20 20 C 1.40094 * 119.81082 * 359.73318 * 14 13 12 21 21 C 1.36565 * 119.90237 * 0.53429 * 20 14 13 22 22 S 1.76193 * 119.95411 * 179.73621 * 21 20 14 23 23 N 1.65606 * 107.21910 * 114.73175 * 22 21 20 24 24 O 1.42105 * 106.40403 * 228.27064 * 22 21 20 25 25 O 1.42098 * 106.40145 * 1.18993 * 22 21 20 26 26 H 0.96998 * 120.00162 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47441 * 60.00249 * 9 7 2 28 28 H 1.09001 * 109.47094 * 299.99953 * 9 7 2 29 29 H 0.97004 * 120.00590 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.94918 * 0.04638 * 12 11 10 31 31 H 1.08006 * 120.05229 * 179.97438 * 13 12 11 32 32 H 1.08994 * 115.54748 * 9.33334 * 17 15 14 33 33 H 1.08999 * 117.50266 * 359.97438 * 18 17 15 34 34 H 1.08999 * 117.49997 * 145.02048 * 18 17 15 35 35 H 1.09000 * 117.50348 * 214.97581 * 19 17 15 36 36 H 1.09001 * 117.49994 * 0.02562 * 19 17 15 37 37 H 1.07993 * 120.05238 * 180.27349 * 20 14 13 38 38 H 0.97000 * 120.00111 * 180.02562 * 23 22 21 39 39 H 0.96998 * 119.99947 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 5.3655 -2.8289 0.0009 12 6 6.2692 -1.7684 0.0004 13 6 7.6122 -2.0133 -0.0002 14 6 8.0815 -3.3336 -0.0008 15 6 9.5243 -3.6018 -0.0020 16 8 9.9287 -4.7454 -0.0021 17 6 10.5036 -2.4563 -0.0031 18 6 11.7086 -2.5580 -0.9404 19 6 11.8980 -2.7185 0.5694 20 6 7.1694 -4.3970 0.0048 21 6 5.8276 -4.1430 -0.0001 22 16 4.6793 -5.4793 -0.0001 23 7 3.8533 -5.4159 1.4338 24 8 3.7328 -5.1952 -1.0213 25 8 5.4514 -6.6718 0.0339 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8889 29 1 3.3697 -3.3125 0.0010 30 1 5.9066 -0.7510 0.0009 31 1 8.3120 -1.1906 -0.0010 32 1 10.0716 -1.4684 0.1565 33 1 11.7933 -3.4536 -1.5559 34 1 12.0695 -1.6369 -1.3978 35 1 12.3837 -1.9029 1.1051 36 1 12.1072 -3.7196 0.9464 37 1 7.5268 -5.4160 0.0088 38 1 3.1684 -6.0746 1.6285 39 1 4.0550 -4.7206 2.0794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853547628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:24 Heat of formation + Delta-G solvation = -58.848845 kcal Electronic energy + Delta-G solvation = -24952.057941 eV Core-core repulsion = 21180.479585 eV Total energy + Delta-G solvation = -3771.578357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31180 -39.01961 -37.13635 -36.21567 -35.70943 -35.52978 -33.17017 -32.84483 -31.63603 -30.21195 -27.83631 -25.15581 -23.54346 -22.88839 -22.68087 -21.10867 -20.05818 -19.19685 -18.50240 -17.69687 -17.23467 -16.87481 -16.40876 -16.02966 -15.63758 -15.29139 -15.09550 -14.56694 -14.49088 -14.26550 -14.00197 -13.94269 -13.53393 -13.00002 -12.84517 -12.57019 -12.49683 -12.05806 -11.95695 -11.84099 -11.80468 -11.75875 -11.13115 -11.07294 -10.86392 -10.71466 -10.63930 -10.44048 -10.21973 -10.00383 -9.72036 -9.66236 -9.51230 -8.89726 -7.49009 -6.38897 -4.44145 0.50792 0.81983 1.09618 2.31039 3.07114 3.12381 3.15067 3.17815 3.44749 3.63015 3.69756 3.84586 3.93685 4.11416 4.49916 4.57112 4.70905 4.73148 4.93532 4.94678 5.01238 5.14267 5.33977 5.41668 5.48126 5.58880 5.70571 5.84406 5.89172 5.98492 6.03183 6.12305 6.20793 6.30441 6.61643 6.70957 7.04501 7.05708 7.27495 7.59840 7.82869 8.16011 8.61419 9.16193 10.73071 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.004275 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.621109 B = 6547.722477 C = 8716.969627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.210 3.790 10 N -0.689 5.689 11 C 0.343 3.657 12 C -0.225 4.225 13 C 0.025 3.975 14 C -0.268 4.268 15 C 0.433 3.567 16 O -0.472 6.472 17 C -0.217 4.217 18 C -0.150 4.150 19 C -0.153 4.153 20 C 0.095 3.905 21 C -0.777 4.777 22 S 2.699 3.301 23 N -1.252 6.252 24 O -0.959 6.959 25 O -0.969 6.969 26 H 0.270 0.730 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.407 0.593 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.420 0.580 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.248 -2.983 3.378 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.102 0.898 9 C 0.088 3.912 10 N -0.306 5.306 11 C 0.221 3.779 12 C -0.248 4.248 13 C 0.005 3.995 14 C -0.273 4.273 15 C 0.314 3.686 16 O -0.350 6.350 17 C -0.236 4.236 18 C -0.187 4.187 19 C -0.190 4.190 20 C 0.075 3.925 21 C -0.872 4.872 22 S 2.789 3.211 23 N -0.926 5.926 24 O -0.948 6.948 25 O -0.959 6.959 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.245 0.755 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.166 0.834 38 H 0.251 0.749 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 17.032 -3.862 2.512 17.644 hybrid contribution -0.009 1.561 0.594 1.670 sum 17.023 -2.301 3.106 17.456 Atomic orbital electron populations 1.69864 1.06219 1.27651 1.48213 1.24798 0.94840 0.99042 0.93768 0.86829 0.80285 0.83422 0.79054 1.19650 1.20607 1.18835 1.20978 0.87870 0.95713 1.54298 0.89785 1.19873 0.96855 0.77508 0.96923 1.46045 1.02139 1.12257 1.70201 1.17739 0.85428 0.91776 0.82945 1.20566 0.92665 0.98785 1.12788 1.21129 0.95073 0.95579 0.87677 1.19893 0.94014 0.94042 1.19331 1.21215 0.88176 0.88437 0.70777 1.90513 1.81497 1.24152 1.38840 1.22760 0.90786 1.00886 1.09172 1.22927 0.98469 1.04016 0.93306 1.22945 0.95717 1.03910 0.96395 1.20584 0.89790 0.99956 0.82203 1.29427 1.10951 1.12025 1.34766 1.01490 0.73476 0.73337 0.72764 1.53094 1.56204 1.44339 1.39009 1.93646 1.61137 1.84673 1.55331 1.93569 1.71258 1.44817 1.86216 0.91955 0.94890 0.95396 0.75456 0.84306 0.84863 0.85731 0.88064 0.87852 0.87965 0.87811 0.83372 0.74949 0.75484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.93 13.96 55.43 0.77 -24.15 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 19.02 27.47 -169.99 -4.67 14.35 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 7 C -0.55 -14.12 9.83 -34.44 -0.34 -14.46 16 8 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 9 C 0.21 4.41 3.71 -5.19 -0.02 4.39 16 10 N -0.69 -12.78 5.51 -59.80 -0.33 -13.11 16 11 C 0.34 5.58 6.61 -83.86 -0.55 5.03 16 12 C -0.23 -3.24 9.23 -39.79 -0.37 -3.61 16 13 C 0.03 0.31 9.40 -39.49 -0.37 -0.06 16 14 C -0.27 -3.67 5.87 -105.05 -0.62 -4.29 16 15 C 0.43 5.69 6.86 -30.87 -0.21 5.47 16 16 O -0.47 -7.48 16.41 5.54 0.09 -7.38 16 17 C -0.22 -2.08 5.77 -91.77 -0.53 -2.61 16 18 C -0.15 -1.25 10.14 -26.73 -0.27 -1.52 16 19 C -0.15 -1.28 10.05 -26.73 -0.27 -1.55 16 20 C 0.09 1.42 9.05 -39.49 -0.36 1.06 16 21 C -0.78 -11.92 5.85 -39.79 -0.23 -12.15 16 22 S 2.70 40.59 5.54 -107.50 -0.60 39.99 16 23 N -1.25 -14.13 9.18 60.35 0.55 -13.57 16 24 O -0.96 -17.81 16.28 -57.17 -0.93 -18.74 16 25 O -0.97 -16.35 16.94 -57.17 -0.97 -17.32 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.66 6.99 -51.93 -0.36 0.30 16 28 H 0.03 0.58 7.36 -51.93 -0.38 0.20 16 29 H 0.41 7.62 5.35 -40.82 -0.22 7.41 16 30 H 0.14 1.92 6.69 -52.48 -0.35 1.56 16 31 H 0.13 1.15 6.11 -52.48 -0.32 0.83 16 32 H 0.12 0.93 6.17 -51.93 -0.32 0.61 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.98 7.89 -51.93 -0.41 0.57 16 37 H 0.15 2.23 6.88 -52.49 -0.36 1.87 16 38 H 0.42 3.82 8.96 -34.48 -0.31 3.51 16 39 H 0.42 4.10 8.92 -34.47 -0.31 3.79 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -33.44 341.79 -9.35 -42.79 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.19 Total: 14.29 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -4.24 Total: -22.29 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 1.00 Total: -50.84 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.81 Total: -43.44 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.67 Total: 14.35 kcal Atomic # 16 Polarization: 40.59 SS G_CDS: -0.60 Total: 39.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.44 -9.35 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.062 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds