Wall clock time and date at job start Tue Mar 31 2020 14:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47077 * 270.00206 * 3 2 1 5 5 H 1.48501 * 109.47236 * 29.99801 * 3 2 1 6 6 H 1.48496 * 109.47443 * 149.99945 * 3 2 1 7 7 C 1.37875 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99755 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00058 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46814 * 180.02562 * 9 7 2 11 11 C 1.38893 * 119.99844 * 179.97438 * 10 9 7 12 12 C 1.39331 * 119.90671 * 359.97438 * 11 10 9 13 13 C 1.36520 * 120.09994 * 180.02562 * 12 11 10 14 14 C 1.40129 * 119.90152 * 0.02562 * 13 12 11 15 15 C 1.46749 * 120.09682 * 179.97438 * 14 13 12 16 16 O 1.21305 * 120.00180 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99886 * 359.97438 * 15 14 13 18 18 C 1.52992 * 117.49843 * 223.61889 * 17 15 14 19 19 C 1.53000 * 117.49728 * 154.99433 * 17 15 14 20 20 C 1.40094 * 119.81082 * 359.73318 * 14 13 12 21 21 C 1.36565 * 119.90237 * 0.53429 * 20 14 13 22 22 S 1.76193 * 119.95411 * 179.73621 * 21 20 14 23 23 N 1.65606 * 107.21910 * 114.73175 * 22 21 20 24 24 O 1.42105 * 106.40403 * 228.27064 * 22 21 20 25 25 O 1.42098 * 106.40145 * 1.18993 * 22 21 20 26 26 H 0.96998 * 120.00162 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47441 * 60.00249 * 9 7 2 28 28 H 1.09001 * 109.47094 * 299.99953 * 9 7 2 29 29 H 0.97004 * 120.00590 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.94918 * 0.04638 * 12 11 10 31 31 H 1.08006 * 120.05229 * 179.97438 * 13 12 11 32 32 H 1.08994 * 115.54748 * 9.33334 * 17 15 14 33 33 H 1.08999 * 117.50266 * 359.97438 * 18 17 15 34 34 H 1.08999 * 117.49997 * 145.02048 * 18 17 15 35 35 H 1.09000 * 117.50348 * 214.97581 * 19 17 15 36 36 H 1.09001 * 117.49994 * 0.02562 * 19 17 15 37 37 H 1.07993 * 120.05238 * 180.27349 * 20 14 13 38 38 H 0.97000 * 120.00111 * 180.02562 * 23 22 21 39 39 H 0.96998 * 119.99947 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 5.3655 -2.8289 0.0009 12 6 6.2692 -1.7684 0.0004 13 6 7.6122 -2.0133 -0.0002 14 6 8.0815 -3.3336 -0.0008 15 6 9.5243 -3.6018 -0.0020 16 8 9.9287 -4.7454 -0.0021 17 6 10.5036 -2.4563 -0.0031 18 6 11.7086 -2.5580 -0.9404 19 6 11.8980 -2.7185 0.5694 20 6 7.1694 -4.3970 0.0048 21 6 5.8276 -4.1430 -0.0001 22 16 4.6793 -5.4793 -0.0001 23 7 3.8533 -5.4159 1.4338 24 8 3.7328 -5.1952 -1.0213 25 8 5.4514 -6.6718 0.0339 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8889 29 1 3.3697 -3.3125 0.0010 30 1 5.9066 -0.7510 0.0009 31 1 8.3120 -1.1906 -0.0010 32 1 10.0716 -1.4684 0.1565 33 1 11.7933 -3.4536 -1.5559 34 1 12.0695 -1.6369 -1.3978 35 1 12.3837 -1.9029 1.1051 36 1 12.1072 -3.7196 0.9464 37 1 7.5268 -5.4160 0.0088 38 1 3.1684 -6.0746 1.6285 39 1 4.0550 -4.7206 2.0794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853547628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:24 Heat of formation + Delta-G solvation = -85.112788 kcal Electronic energy + Delta-G solvation = -24953.196831 eV Core-core repulsion = 21180.479585 eV Total energy + Delta-G solvation = -3772.717247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38553 -40.13414 -38.45088 -37.08818 -37.05367 -36.83458 -34.76037 -34.15605 -32.81665 -31.57119 -29.34358 -26.30208 -24.71236 -24.31180 -23.28568 -22.38693 -21.15604 -20.32307 -19.85597 -18.90183 -18.54410 -17.92664 -17.83787 -17.29844 -16.70744 -16.60138 -16.30510 -15.86418 -15.70434 -15.37759 -15.23446 -15.12374 -14.92840 -14.46677 -13.98939 -13.85280 -13.66071 -13.33280 -13.32058 -13.18626 -13.00398 -12.80092 -12.69750 -12.40070 -11.95668 -11.82845 -11.62690 -11.48034 -11.45191 -11.40622 -11.33599 -10.83317 -10.68275 -10.61700 -8.77881 -8.36711 -6.47870 -0.70225 -0.29220 -0.05920 1.26847 1.39855 1.42040 1.51621 2.02273 2.26788 2.32252 2.36558 2.63748 2.93494 2.98690 3.07121 3.38103 3.71227 3.81597 3.94125 4.06520 4.14043 4.26516 4.27409 4.32941 4.59186 4.65529 4.77540 4.87107 4.99001 4.99283 5.07930 5.11280 5.14544 5.21327 5.24594 5.25193 5.55116 5.81811 6.17899 6.23329 6.41657 6.59626 6.62558 7.17202 8.79060 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.004275 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.621109 B = 6547.722477 C = 8716.969627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.226 1.226 7 C -0.560 4.560 8 H 0.039 0.961 9 C 0.220 3.780 10 N -0.706 5.706 11 C 0.327 3.673 12 C -0.230 4.230 13 C 0.046 3.954 14 C -0.266 4.266 15 C 0.430 3.570 16 O -0.508 6.508 17 C -0.225 4.225 18 C -0.145 4.145 19 C -0.149 4.149 20 C 0.076 3.924 21 C -0.772 4.772 22 S 2.714 3.286 23 N -1.237 6.237 24 O -0.999 6.999 25 O -0.991 6.991 26 H 0.272 0.728 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.401 0.599 30 H 0.154 0.846 31 H 0.182 0.818 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.431 0.569 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.735 -0.087 3.986 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.149 1.149 7 C -0.598 4.598 8 H 0.057 0.943 9 C 0.098 3.902 10 N -0.326 5.326 11 C 0.209 3.791 12 C -0.253 4.253 13 C 0.027 3.973 14 C -0.271 4.271 15 C 0.313 3.687 16 O -0.388 6.388 17 C -0.243 4.243 18 C -0.182 4.182 19 C -0.186 4.186 20 C 0.056 3.944 21 C -0.868 4.868 22 S 2.805 3.195 23 N -0.917 5.917 24 O -0.987 6.987 25 O -0.981 6.981 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.238 0.762 30 H 0.171 0.829 31 H 0.199 0.801 32 H 0.174 0.826 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.264 0.736 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 20.562 -1.006 3.133 20.823 hybrid contribution -1.008 0.500 0.416 1.200 sum 19.554 -0.506 3.548 19.879 Atomic orbital electron populations 1.70036 1.08537 1.28837 1.50321 1.25861 0.95664 1.03590 0.93135 0.85684 0.80167 0.77398 0.79564 1.19105 1.20929 1.14888 1.21280 0.90724 0.94179 1.53598 0.94255 1.19636 0.93465 0.79171 0.97974 1.45801 1.03064 1.11022 1.72714 1.17944 0.84684 0.92645 0.83861 1.20849 0.93165 0.98772 1.12530 1.21546 0.94958 0.95961 0.84824 1.20229 0.94450 0.94537 1.17874 1.21732 0.88504 0.89066 0.69374 1.90510 1.81918 1.25967 1.40420 1.22824 0.90482 1.00390 1.10620 1.23047 0.97278 1.04669 0.93237 1.23048 0.94715 1.04038 0.96751 1.20658 0.89984 1.00403 0.83349 1.29227 1.10893 1.11683 1.34972 1.00744 0.73017 0.72879 0.72830 1.52737 1.56110 1.44951 1.37911 1.93603 1.62390 1.85164 1.57572 1.93540 1.71721 1.46092 1.86724 0.91923 0.92924 0.94529 0.76182 0.82879 0.80109 0.82601 0.89767 0.84980 0.85114 0.89657 0.84224 0.73604 0.74336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.70 13.96 21.45 0.30 -54.40 16 2 C 0.02 0.90 5.47 84.65 0.46 1.37 16 3 Si 0.95 37.92 27.47 68.60 1.88 39.81 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.23 -7.61 6.54 99.48 0.65 -6.96 16 7 C -0.56 -29.26 9.83 25.60 0.25 -29.01 16 8 H 0.04 2.33 7.84 -2.91 -0.02 2.31 16 9 C 0.22 8.91 3.71 85.63 0.32 9.22 16 10 N -0.71 -25.97 5.51 -343.12 -1.89 -27.86 16 11 C 0.33 10.19 6.61 38.54 0.25 10.44 16 12 C -0.23 -5.79 9.23 22.13 0.20 -5.59 16 13 C 0.05 0.92 9.40 22.33 0.21 1.13 16 14 C -0.27 -6.64 5.87 -20.14 -0.12 -6.76 16 15 C 0.43 10.34 6.86 27.91 0.19 10.53 16 16 O -0.51 -15.83 16.41 -3.11 -0.05 -15.89 16 17 C -0.22 -3.38 5.77 -11.54 -0.07 -3.44 16 18 C -0.15 -1.90 10.14 30.59 0.31 -1.59 16 19 C -0.15 -1.97 10.05 30.59 0.31 -1.66 16 20 C 0.08 2.24 9.05 22.33 0.20 2.44 16 21 C -0.77 -23.48 5.85 22.13 0.13 -23.35 16 22 S 2.71 84.19 5.54 -56.49 -0.31 83.88 16 23 N -1.24 -28.51 9.18 37.02 0.34 -28.17 16 24 O -1.00 -38.78 16.28 -128.00 -2.08 -40.86 16 25 O -0.99 -34.49 16.94 -128.00 -2.17 -36.66 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.05 1.93 6.99 -2.39 -0.02 1.91 16 28 H 0.04 1.42 7.36 -2.39 -0.02 1.41 16 29 H 0.40 15.49 5.35 -92.71 -0.50 15.00 16 30 H 0.15 3.46 6.69 -2.91 -0.02 3.44 16 31 H 0.18 1.86 6.11 -2.91 -0.02 1.84 16 32 H 0.16 1.32 6.17 -2.39 -0.01 1.31 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.46 7.89 -2.39 -0.02 1.45 16 37 H 0.14 4.31 6.88 -2.91 -0.02 4.29 16 38 H 0.43 8.02 8.96 -96.74 -0.87 7.16 16 39 H 0.43 8.38 8.92 -96.74 -0.86 7.51 16 Total: -1.00 -76.34 341.79 -2.46 -78.81 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -1.14 Total: 37.61 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 2.66 Total: -36.26 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -1.25 Total: -110.43 kcal Atomic # 8 Polarization: -89.11 SS G_CDS: -4.30 Total: -93.41 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.88 Total: 39.81 kcal Atomic # 16 Polarization: 84.19 SS G_CDS: -0.31 Total: 83.88 kcal Total: -76.34 -2.46 -78.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.305 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds