Wall clock time and date at job start Tue Mar 31 2020 14:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47279 * 269.99913 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99812 * 3 2 1 6 6 H 1.48501 * 109.47406 * 149.99864 * 3 2 1 7 7 C 1.38635 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00170 * 0.02562 * 7 2 1 9 9 O 1.34812 * 120.00195 * 179.97438 * 7 2 1 10 10 C 1.35768 * 116.99956 * 174.98482 * 9 7 2 11 11 C 1.38743 * 120.09015 * 5.16684 * 10 9 7 12 12 C 1.38342 * 119.97788 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.92539 * 180.02562 * 12 11 10 14 14 C 1.38557 * 120.15036 * 0.02562 * 12 11 10 15 15 C 1.38182 * 120.18273 * 359.72007 * 14 12 11 16 16 C 1.38714 * 120.01436 * 0.55421 * 15 14 12 17 17 N 1.40091 * 120.07409 * 179.71865 * 16 15 14 18 18 C 1.34773 * 120.00198 * 335.19860 * 17 16 15 19 19 O 1.21295 * 120.00092 * 354.44347 * 18 17 16 20 20 C 1.50701 * 119.99908 * 174.43627 * 18 17 16 21 21 H 1.08992 * 109.32858 * 319.77926 * 20 18 17 22 22 C 1.53137 * 109.39285 * 79.55434 * 20 18 17 23 23 C 1.53473 * 108.37402 * 168.10413 * 22 20 18 24 24 O 1.45439 * 108.11646 * 298.29111 * 23 22 20 25 25 C 1.34212 * 117.18466 * 46.43067 * 24 23 22 26 26 O 1.21503 * 118.45727 * 163.20078 * 25 24 23 27 27 N 1.33730 * 123.07532 * 343.18495 * 25 24 23 28 28 H 0.97006 * 120.00127 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.01273 * 0.02562 * 11 10 9 30 30 H 1.08006 * 119.90568 * 180.02562 * 14 12 11 31 31 H 1.07999 * 119.99670 * 180.27424 * 15 14 12 32 32 H 0.97009 * 119.99825 * 155.19547 * 17 16 15 33 33 H 1.08997 * 109.68150 * 287.82407 * 22 20 18 34 34 H 1.08999 * 109.68536 * 48.39484 * 22 20 18 35 35 H 1.08998 * 109.73647 * 178.62897 * 23 22 20 36 36 H 1.08996 * 109.72010 * 57.94281 * 23 22 20 37 37 H 0.97006 * 118.51429 * 182.31022 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4057 0.1063 11 6 3.2237 -3.5733 0.1013 12 6 3.8542 -4.7999 0.2093 13 9 3.1234 -5.9361 0.2038 14 6 5.2335 -4.8658 0.3230 15 6 5.9867 -3.7073 0.3234 16 6 5.3616 -2.4733 0.2213 17 7 6.1236 -1.2977 0.2275 18 6 7.3384 -1.2851 0.8110 19 8 7.7299 -2.2596 1.4178 20 6 8.2104 -0.0602 0.7094 21 1 8.1345 0.3543 -0.2958 22 6 7.7413 0.9838 1.7268 23 6 8.8076 2.0839 1.8178 24 8 10.0434 1.4781 2.2880 25 6 10.4250 0.3314 1.7042 26 8 11.5758 -0.0332 1.8416 27 7 9.5978 -0.4287 0.9787 28 1 -0.4851 0.8401 -0.0004 29 1 2.1485 -3.5246 0.0124 30 1 5.7217 -5.8256 0.4066 31 1 7.0620 -3.7624 0.4078 32 1 5.7768 -0.4927 -0.1883 33 1 6.7953 1.4156 1.4001 34 1 7.6140 0.5145 2.7023 35 1 8.4843 2.8527 2.5195 36 1 8.9652 2.5255 0.8339 37 1 9.9346 -1.2624 0.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860057471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:21 Heat of formation + Delta-G solvation = -146.384744 kcal Electronic energy + Delta-G solvation = -27233.282816 eV Core-core repulsion = 22891.695442 eV Total energy + Delta-G solvation = -4341.587374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.41465 -41.53035 -40.34751 -39.00803 -37.40724 -36.76042 -35.59050 -34.59285 -32.65523 -31.97094 -29.82557 -29.16820 -27.14797 -25.58496 -24.45089 -22.89715 -21.86329 -20.75088 -20.39175 -18.73088 -18.64373 -18.31171 -17.79773 -17.53300 -16.81649 -16.30574 -15.63520 -15.49471 -15.32120 -15.12202 -15.05487 -14.89727 -14.50414 -14.30927 -14.11320 -13.98518 -13.61464 -13.42200 -12.78985 -12.64920 -12.50922 -12.41034 -12.06315 -11.97952 -11.68843 -11.15113 -11.05221 -10.97529 -10.76445 -10.62401 -10.24825 -10.00598 -9.81957 -9.43974 -9.14859 -8.15061 -7.42227 -6.67532 -4.35778 1.45401 1.84692 2.23381 2.36696 2.49522 2.92840 2.97898 3.00801 3.06055 3.18267 3.93903 3.94220 4.04863 4.13786 4.31788 4.36894 4.44914 4.67669 4.79806 4.81044 4.84295 5.04584 5.32376 5.40482 5.52633 5.56407 5.70745 5.85231 6.18696 6.46466 6.51758 6.64608 6.69645 6.72008 7.28547 7.29960 7.38529 7.49989 7.72592 7.84016 7.98290 8.64263 9.16380 10.39516 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.004489 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.266879 B = 6235.938664 C = 8665.087159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.393 4.393 8 H 0.110 0.890 9 O -0.209 6.209 10 C 0.166 3.834 11 C -0.244 4.244 12 C 0.132 3.868 13 F -0.147 7.147 14 C -0.219 4.219 15 C -0.058 4.058 16 C 0.056 3.944 17 N -0.641 5.641 18 C 0.499 3.501 19 O -0.513 6.513 20 C 0.121 3.879 21 H 0.110 0.890 22 C -0.172 4.172 23 C 0.063 3.937 24 O -0.342 6.342 25 C 0.664 3.336 26 O -0.532 6.532 27 N -0.710 5.710 28 H 0.283 0.717 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 3.856 -1.168 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.127 0.873 9 O -0.114 6.114 10 C 0.111 3.889 11 C -0.265 4.265 12 C 0.112 3.888 13 F -0.126 7.126 14 C -0.240 4.240 15 C -0.078 4.078 16 C -0.038 4.038 17 N -0.285 5.285 18 C 0.284 3.716 19 O -0.389 6.389 20 C 0.012 3.988 21 H 0.127 0.873 22 C -0.210 4.210 23 C -0.011 4.011 24 O -0.253 6.253 25 C 0.417 3.583 26 O -0.417 6.417 27 N -0.378 5.378 28 H 0.093 0.907 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.166 0.834 32 H 0.250 0.750 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 12.498 3.745 -0.400 13.053 hybrid contribution -0.664 0.435 -0.483 0.929 sum 11.834 4.179 -0.883 12.581 Atomic orbital electron populations 1.69636 1.05621 1.28879 1.46316 1.24489 0.95063 0.98867 0.95455 0.86183 0.80212 0.81497 0.78926 1.19636 1.20527 1.18503 1.20758 0.76182 0.96958 1.52899 0.87308 1.83459 1.23308 1.24718 1.79886 1.18381 0.89173 0.85943 0.95393 1.20995 1.02217 0.90037 1.13220 1.17498 0.89089 0.81393 1.00799 1.91439 1.77839 1.49368 1.93924 1.20576 0.91584 0.99134 1.12671 1.20750 1.00636 0.88995 0.97441 1.16865 0.87030 0.86145 1.13762 1.43068 1.16706 1.13227 1.55538 1.20512 0.82455 0.89367 0.79280 1.90718 1.72651 1.35297 1.40196 1.21019 0.82184 0.94128 1.01517 0.87284 1.22602 1.01098 0.96117 1.01154 1.23518 0.80481 0.94848 1.02234 1.86731 1.42518 1.36195 1.59871 1.17739 0.84356 0.79518 0.76695 1.91047 1.16354 1.71180 1.63082 1.45084 1.10141 1.26588 1.55982 0.90659 0.83186 0.85564 0.83429 0.74956 0.86609 0.88386 0.85941 0.89810 0.73598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.83 13.96 55.48 0.77 -22.06 16 2 C 0.07 1.64 5.49 -17.52 -0.10 1.54 16 3 Si 0.91 18.15 28.62 -169.99 -4.86 13.29 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 7 C -0.39 -9.73 9.94 30.88 0.31 -9.42 16 8 H 0.11 2.84 5.44 -52.49 -0.29 2.55 16 9 O -0.21 -4.55 8.00 0.04 0.00 -4.55 16 10 C 0.17 3.29 6.66 -38.93 -0.26 3.03 16 11 C -0.24 -4.88 9.14 -39.36 -0.36 -5.24 16 12 C 0.13 2.41 7.29 -39.43 -0.29 2.13 16 13 F -0.15 -2.65 17.26 2.25 0.04 -2.61 16 14 C -0.22 -3.62 10.02 -39.48 -0.40 -4.01 16 15 C -0.06 -0.95 8.72 -39.43 -0.34 -1.30 16 16 C 0.06 0.96 6.45 -83.45 -0.54 0.42 16 17 N -0.64 -8.73 5.29 -9.71 -0.05 -8.78 16 18 C 0.50 6.20 6.80 -10.99 -0.07 6.13 16 19 O -0.51 -8.02 13.56 5.54 0.08 -7.95 16 20 C 0.12 1.05 3.53 -69.25 -0.24 0.81 16 21 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 22 C -0.17 -1.28 5.56 -26.42 -0.15 -1.43 16 23 C 0.06 0.42 7.20 37.40 0.27 0.69 16 24 O -0.34 -3.90 10.50 -39.28 -0.41 -4.31 16 25 C 0.66 8.66 8.55 53.59 0.46 9.12 16 26 O -0.53 -8.99 17.95 -19.40 -0.35 -9.33 16 27 N -0.71 -7.47 4.85 -60.48 -0.29 -7.77 16 28 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.15 3.17 5.63 -52.49 -0.30 2.88 16 30 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.15 2.30 5.79 -52.49 -0.30 2.00 16 32 H 0.41 4.91 8.34 -40.82 -0.34 4.57 16 33 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.42 4.43 8.51 -40.82 -0.35 4.08 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -31.11 327.42 -5.10 -36.21 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -3.24 Total: 10.45 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.71 Total: 2.47 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.43 Total: -38.61 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.69 Total: -26.14 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.86 Total: 13.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.11 -5.10 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860057471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.170 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds