Wall clock time and date at job start Tue Mar 31 2020 14:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48496 * 109.47299 * 270.00339 * 3 2 1 5 5 H 1.48502 * 109.47224 * 30.00158 * 3 2 1 6 6 H 1.48495 * 109.46986 * 150.00082 * 3 2 1 7 7 C 1.37878 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47015 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00403 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99650 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.53779 * 113.61123 * 180.02562 * 14 12 11 16 16 C 1.53787 * 87.07963 * 220.01652 * 15 14 12 17 17 O 1.42896 * 113.61435 * 270.88419 * 16 15 14 18 18 C 1.50702 * 113.61150 * 139.98062 * 16 15 14 19 19 C 1.38265 * 119.99332 * 329.72223 * 18 16 15 20 20 C 1.38221 * 120.02336 * 179.76561 * 19 18 16 21 21 C 1.38242 * 120.01134 * 0.51717 * 20 19 18 22 22 C 1.38328 * 119.98878 * 359.74110 * 21 20 19 23 23 Cl 1.73595 * 120.01263 * 179.97438 * 22 21 20 24 24 C 1.38189 * 119.99094 * 150.00609 * 18 16 15 25 25 C 1.53779 * 113.61419 * 82.50386 * 14 12 11 26 26 H 0.96998 * 120.00386 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47443 * 59.99056 * 9 7 2 28 28 H 1.09001 * 109.46457 * 299.99637 * 9 7 2 29 29 H 1.09000 * 109.47437 * 59.99781 * 10 9 7 30 30 H 1.09001 * 109.47288 * 299.99222 * 10 9 7 31 31 H 1.09006 * 112.91053 * 311.25179 * 14 12 11 32 32 H 1.08997 * 113.61646 * 105.47284 * 15 14 12 33 33 H 1.09000 * 113.61527 * 334.56555 * 15 14 12 34 34 H 0.96699 * 113.99840 * 179.97438 * 17 16 15 35 35 H 1.07992 * 119.98895 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.99358 * 180.27448 * 20 19 18 37 37 H 1.08005 * 120.00011 * 179.72250 * 21 20 19 38 38 H 1.07997 * 120.00909 * 359.97438 * 24 18 16 39 39 H 1.09002 * 113.61557 * 25.43210 * 25 14 12 40 40 H 1.09004 * 113.61501 * 254.52631 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 8 1.5194 -4.9196 -0.0033 12 6 2.2504 -6.0453 -0.0047 13 8 3.4570 -5.9820 -0.0051 14 6 1.5662 -7.3880 -0.0059 15 6 2.5421 -8.5765 -0.0069 16 6 1.5833 -9.2615 -0.9951 17 8 0.5636 -10.0355 -0.3601 18 6 2.2866 -10.0099 -2.0980 19 6 3.5192 -9.5766 -2.5505 20 6 4.1670 -10.2653 -3.5587 21 6 3.5779 -11.3816 -4.1226 22 6 2.3423 -11.8124 -3.6741 23 17 1.6017 -13.2136 -4.3822 24 6 1.6967 -11.1256 -2.6610 25 6 1.1223 -7.8519 -1.4032 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6241 -2.5574 0.8881 29 1 2.8720 -3.6051 0.8873 30 1 2.8719 -3.6036 -0.8927 31 1 0.7840 -7.4664 0.7492 32 1 2.6132 -9.0839 0.9551 33 1 3.5162 -8.3413 -0.4356 34 1 -0.0428 -10.4684 -0.9765 35 1 3.9779 -8.7023 -2.1131 36 1 5.1318 -9.9291 -3.9086 37 1 4.0822 -11.9170 -4.9135 38 1 0.7320 -11.4614 -2.3104 39 1 1.7082 -7.4185 -2.2138 40 1 0.0476 -7.7745 -1.5680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860103205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:37 Heat of formation + Delta-G solvation = -104.198073 kcal Electronic energy + Delta-G solvation = -23999.170981 eV Core-core repulsion = 20191.289677 eV Total energy + Delta-G solvation = -3807.881304 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24685 -39.79087 -38.47512 -36.79414 -36.18384 -35.04066 -33.35619 -31.65367 -31.11654 -30.30530 -26.79039 -26.15946 -24.89412 -23.26058 -22.97092 -21.10277 -20.56327 -19.75298 -18.46756 -17.34189 -16.57131 -16.35813 -16.15441 -16.00977 -15.84464 -15.60728 -14.93128 -14.60446 -14.40116 -14.24083 -13.86944 -13.44735 -13.13245 -12.81462 -12.64777 -12.44124 -12.34681 -12.07459 -11.82204 -11.58048 -11.48874 -11.37878 -11.23507 -11.04292 -10.79050 -10.76765 -10.67363 -10.46406 -10.12026 -9.66714 -9.60321 -9.34140 -9.30558 -9.07147 -8.45973 -6.11896 -4.16401 0.69126 0.77857 1.69126 2.48445 3.10334 3.13683 3.27207 3.33545 3.37933 3.62504 4.04241 4.14598 4.23675 4.36747 4.38775 4.45118 4.65736 4.74761 4.91475 5.10729 5.16312 5.24587 5.29209 5.37773 5.42452 5.45987 5.62902 5.69630 5.75802 5.87751 5.97538 6.05683 6.07436 6.07797 6.31278 6.61724 6.97226 7.17829 7.54108 7.60580 7.84965 8.16536 8.24587 8.89148 9.48033 10.99571 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.002060 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.457542 B =13591.064861 C =13828.002228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.074 3.926 11 O -0.354 6.354 12 C 0.465 3.535 13 O -0.519 6.519 14 C -0.103 4.103 15 C -0.103 4.103 16 C 0.147 3.853 17 O -0.530 6.530 18 C -0.085 4.085 19 C -0.104 4.104 20 C -0.101 4.101 21 C -0.112 4.112 22 C -0.031 4.031 23 Cl -0.071 7.071 24 C -0.107 4.107 25 C -0.137 4.137 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.379 0.621 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -26.717 -7.194 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.270 6.270 12 C 0.308 3.692 13 O -0.408 6.408 14 C -0.123 4.123 15 C -0.139 4.139 16 C 0.105 3.895 17 O -0.337 6.337 18 C -0.085 4.085 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.131 4.131 22 C -0.058 4.058 23 Cl -0.042 7.042 24 C -0.125 4.125 25 C -0.174 4.174 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.229 0.771 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.794 -26.439 -6.716 27.541 hybrid contribution 0.153 0.694 -0.587 0.922 sum 3.947 -25.745 -7.303 27.050 Atomic orbital electron populations 1.69973 1.06086 1.27002 1.49748 1.24990 0.94928 0.99404 0.94873 0.86468 0.79766 0.82817 0.78240 1.20478 1.21038 1.19724 1.20977 0.93161 0.90128 1.52212 0.92274 1.19168 0.94189 0.89052 0.98880 1.23652 0.96388 0.78915 1.00896 1.86541 1.42407 1.15809 1.82212 1.23303 0.86392 0.87087 0.72462 1.90607 1.15763 1.88274 1.46200 1.22363 1.00242 0.88712 1.00934 1.23195 0.97489 0.92804 1.00459 1.20891 0.89000 0.88567 0.91021 1.86571 1.43166 1.67474 1.36456 1.20140 0.95539 0.95482 0.97368 1.21254 0.94166 1.00205 0.96590 1.21175 1.00227 0.94540 0.95936 1.21120 0.93893 0.97445 1.00626 1.20859 0.95337 0.91668 0.97898 1.98381 1.82377 1.40253 1.83171 1.20747 1.00597 0.95333 0.95834 1.23623 1.03596 0.94356 0.95850 0.92696 0.95381 0.95330 0.92305 0.92358 0.85247 0.89144 0.86844 0.77139 0.84474 0.84594 0.84817 0.84940 0.88401 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 10 C 0.07 1.64 5.40 37.16 0.20 1.84 16 11 O -0.35 -7.01 10.22 -39.25 -0.40 -7.41 16 12 C 0.46 7.82 7.48 36.01 0.27 8.09 16 13 O -0.52 -9.73 15.65 -18.75 -0.29 -10.03 16 14 C -0.10 -1.26 4.19 -90.96 -0.38 -1.64 16 15 C -0.10 -1.08 6.59 -25.92 -0.17 -1.25 16 16 C 0.15 1.34 1.70 -90.93 -0.15 1.18 16 17 O -0.53 -4.56 13.17 -35.23 -0.46 -5.03 16 18 C -0.08 -0.73 5.26 -104.63 -0.55 -1.28 16 19 C -0.10 -0.89 8.98 -39.58 -0.36 -1.24 16 20 C -0.10 -0.74 10.05 -39.59 -0.40 -1.14 16 21 C -0.11 -0.84 9.83 -39.55 -0.39 -1.22 16 22 C -0.03 -0.25 6.32 -39.50 -0.25 -0.50 16 23 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.05 16 24 C -0.11 -0.84 9.16 -39.55 -0.36 -1.20 16 25 C -0.14 -1.39 6.96 -25.90 -0.18 -1.57 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.21 5.28 -51.93 -0.27 0.94 16 34 H 0.38 1.90 7.19 45.56 0.33 2.23 16 35 H 0.14 1.15 6.24 -52.49 -0.33 0.82 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.13 0.79 6.36 -52.49 -0.33 0.45 16 39 H 0.10 1.03 7.91 -51.93 -0.41 0.62 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -32.16 356.11 -9.22 -41.38 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.36 Total: -0.04 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.28 Total: -12.95 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.16 Total: -22.46 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.16 -9.22 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860103205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.814 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds