Wall clock time and date at job start Tue Mar 31 2020 14:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48496 * 109.47299 * 270.00339 * 3 2 1 5 5 H 1.48502 * 109.47224 * 30.00158 * 3 2 1 6 6 H 1.48495 * 109.46986 * 150.00082 * 3 2 1 7 7 C 1.37878 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47015 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00403 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99650 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.53779 * 113.61123 * 180.02562 * 14 12 11 16 16 C 1.53787 * 87.07963 * 220.01652 * 15 14 12 17 17 O 1.42896 * 113.61435 * 270.88419 * 16 15 14 18 18 C 1.50702 * 113.61150 * 139.98062 * 16 15 14 19 19 C 1.38265 * 119.99332 * 329.72223 * 18 16 15 20 20 C 1.38221 * 120.02336 * 179.76561 * 19 18 16 21 21 C 1.38242 * 120.01134 * 0.51717 * 20 19 18 22 22 C 1.38328 * 119.98878 * 359.74110 * 21 20 19 23 23 Cl 1.73595 * 120.01263 * 179.97438 * 22 21 20 24 24 C 1.38189 * 119.99094 * 150.00609 * 18 16 15 25 25 C 1.53779 * 113.61419 * 82.50386 * 14 12 11 26 26 H 0.96998 * 120.00386 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47443 * 59.99056 * 9 7 2 28 28 H 1.09001 * 109.46457 * 299.99637 * 9 7 2 29 29 H 1.09000 * 109.47437 * 59.99781 * 10 9 7 30 30 H 1.09001 * 109.47288 * 299.99222 * 10 9 7 31 31 H 1.09006 * 112.91053 * 311.25179 * 14 12 11 32 32 H 1.08997 * 113.61646 * 105.47284 * 15 14 12 33 33 H 1.09000 * 113.61527 * 334.56555 * 15 14 12 34 34 H 0.96699 * 113.99840 * 179.97438 * 17 16 15 35 35 H 1.07992 * 119.98895 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.99358 * 180.27448 * 20 19 18 37 37 H 1.08005 * 120.00011 * 179.72250 * 21 20 19 38 38 H 1.07997 * 120.00909 * 359.97438 * 24 18 16 39 39 H 1.09002 * 113.61557 * 25.43210 * 25 14 12 40 40 H 1.09004 * 113.61501 * 254.52631 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 8 1.5194 -4.9196 -0.0033 12 6 2.2504 -6.0453 -0.0047 13 8 3.4570 -5.9820 -0.0051 14 6 1.5662 -7.3880 -0.0059 15 6 2.5421 -8.5765 -0.0069 16 6 1.5833 -9.2615 -0.9951 17 8 0.5636 -10.0355 -0.3601 18 6 2.2866 -10.0099 -2.0980 19 6 3.5192 -9.5766 -2.5505 20 6 4.1670 -10.2653 -3.5587 21 6 3.5779 -11.3816 -4.1226 22 6 2.3423 -11.8124 -3.6741 23 17 1.6017 -13.2136 -4.3822 24 6 1.6967 -11.1256 -2.6610 25 6 1.1223 -7.8519 -1.4032 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6241 -2.5574 0.8881 29 1 2.8720 -3.6051 0.8873 30 1 2.8719 -3.6036 -0.8927 31 1 0.7840 -7.4664 0.7492 32 1 2.6132 -9.0839 0.9551 33 1 3.5162 -8.3413 -0.4356 34 1 -0.0428 -10.4684 -0.9765 35 1 3.9779 -8.7023 -2.1131 36 1 5.1318 -9.9291 -3.9086 37 1 4.0822 -11.9170 -4.9135 38 1 0.7320 -11.4614 -2.3104 39 1 1.7082 -7.4185 -2.2138 40 1 0.0476 -7.7745 -1.5680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860103205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:37 Heat of formation + Delta-G solvation = -122.368890 kcal Electronic energy + Delta-G solvation = -23999.958927 eV Core-core repulsion = 20191.289677 eV Total energy + Delta-G solvation = -3808.669250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.19592 -40.93246 -39.26894 -37.68601 -37.36073 -35.87233 -35.45105 -32.47121 -32.16071 -31.68447 -28.02265 -26.98541 -26.60418 -24.18723 -23.64506 -22.88314 -21.71032 -20.65022 -19.38315 -18.76586 -18.11355 -17.63965 -17.34192 -17.14360 -16.63126 -16.52056 -16.30762 -15.81737 -15.32281 -14.98475 -14.77110 -14.59977 -14.41802 -14.36094 -13.62612 -13.59545 -13.35947 -13.11948 -13.00222 -12.69647 -12.62887 -12.60219 -12.44456 -12.29043 -12.27843 -12.02191 -11.79734 -11.59051 -11.50187 -11.47364 -11.33444 -10.96796 -10.62156 -9.93015 -9.69056 -8.27805 -6.41190 0.07995 0.19993 1.10255 1.12964 1.40527 1.42506 1.53522 1.76123 2.39601 2.49602 2.94179 3.06467 3.25968 3.35692 3.44272 3.57827 3.84034 3.91397 4.09149 4.11505 4.21071 4.25971 4.26736 4.40077 4.52190 4.60643 4.68442 4.69641 4.81973 4.87311 4.89063 5.08336 5.17249 5.26225 5.33537 5.43613 5.45309 5.54698 5.73655 5.73907 6.05446 6.67832 6.70154 6.74718 7.28629 8.84768 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.002060 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.457542 B =13591.064861 C =13828.002228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.089 3.911 11 O -0.365 6.365 12 C 0.463 3.537 13 O -0.539 6.539 14 C -0.104 4.104 15 C -0.103 4.103 16 C 0.165 3.835 17 O -0.538 6.538 18 C -0.094 4.094 19 C -0.116 4.116 20 C -0.103 4.103 21 C -0.114 4.114 22 C -0.042 4.042 23 Cl -0.069 7.069 24 C -0.108 4.108 25 C -0.135 4.135 26 H 0.268 0.732 27 H 0.006 0.994 28 H 0.005 0.995 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.396 0.604 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -27.577 -7.720 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.016 3.984 11 O -0.281 6.281 12 C 0.308 3.692 13 O -0.429 6.429 14 C -0.123 4.123 15 C -0.140 4.140 16 C 0.123 3.877 17 O -0.347 6.347 18 C -0.094 4.094 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.069 4.069 23 Cl -0.041 7.041 24 C -0.127 4.127 25 C -0.173 4.173 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.248 0.752 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.111 0.889 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.453 -27.334 -7.250 28.627 hybrid contribution -0.074 0.854 -0.440 0.963 sum 4.379 -26.480 -7.691 27.920 Atomic orbital electron populations 1.70094 1.07814 1.28291 1.50365 1.25980 0.95863 1.03457 0.94092 0.85315 0.78521 0.77719 0.78705 1.19469 1.20414 1.18734 1.21373 0.93693 0.91229 1.52493 0.91678 1.18980 0.94362 0.90710 0.96648 1.23159 0.95037 0.79260 1.00950 1.86538 1.42772 1.15907 1.82895 1.24245 0.86369 0.87411 0.71161 1.90591 1.16774 1.88452 1.47074 1.22584 1.00944 0.85969 1.02779 1.23230 0.97417 0.92083 1.01307 1.20544 0.88608 0.88103 0.90397 1.86539 1.43388 1.67438 1.37303 1.20084 0.95775 0.95984 0.97579 1.21362 0.94469 1.00397 0.97139 1.21407 1.00921 0.94333 0.95476 1.21373 0.93753 0.97366 1.00761 1.21012 0.95745 0.91909 0.98201 1.98381 1.82376 1.40154 1.83140 1.20935 1.01274 0.94895 0.95585 1.23674 1.04305 0.95015 0.94274 0.92323 0.97521 0.97621 0.92310 0.92100 0.84141 0.88610 0.87172 0.75215 0.84868 0.82770 0.83251 0.83215 0.88860 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.63 5.35 29.85 0.16 1.79 16 10 C 0.09 4.02 5.40 71.98 0.39 4.41 16 11 O -0.36 -14.63 10.22 -51.38 -0.53 -15.16 16 12 C 0.46 15.57 7.48 71.24 0.53 16.10 16 13 O -0.54 -20.22 15.65 21.97 0.34 -19.87 16 14 C -0.10 -2.45 4.19 -11.01 -0.05 -2.50 16 15 C -0.10 -2.07 6.59 31.12 0.21 -1.86 16 16 C 0.17 2.75 1.70 -11.00 -0.02 2.73 16 17 O -0.54 -8.05 13.17 -148.98 -1.96 -10.02 16 18 C -0.09 -1.47 5.26 -19.87 -0.10 -1.58 16 19 C -0.12 -1.84 8.98 22.27 0.20 -1.64 16 20 C -0.10 -1.37 10.05 22.27 0.22 -1.15 16 21 C -0.11 -1.50 9.83 22.29 0.22 -1.28 16 22 C -0.04 -0.61 6.32 22.32 0.14 -0.47 16 23 Cl -0.07 -0.96 28.96 -2.72 -0.08 -1.04 16 24 C -0.11 -1.51 9.16 22.29 0.20 -1.31 16 25 C -0.13 -2.59 6.96 31.13 0.22 -2.37 16 26 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 30 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 31 H 0.14 3.02 8.14 -2.38 -0.02 3.00 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 2.29 5.28 -2.39 -0.01 2.28 16 34 H 0.40 2.94 7.19 -74.06 -0.53 2.41 16 35 H 0.13 2.17 6.24 -2.91 -0.02 2.16 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.43 6.36 -2.91 -0.02 1.41 16 39 H 0.09 1.89 7.91 -2.39 -0.02 1.88 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.66 356.11 3.65 -65.01 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.54 Total: 10.13 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.02 Total: -19.38 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.28 Total: -55.22 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -2.14 Total: -45.05 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -68.66 3.65 -65.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860103205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.362 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds