Wall clock time and date at job start Tue Mar 31 2020 14:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47046 * 240.00004 * 3 2 1 5 5 H 1.48498 * 109.46881 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46865 * 119.99780 * 3 2 1 7 7 C 1.37873 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00349 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46871 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.46959 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54409 * 68.37343 * 12 11 10 14 14 O 1.42103 * 110.54126 * 291.62616 * 12 11 10 15 15 N 1.65598 * 104.44918 * 179.97438 * 12 11 10 16 16 N 1.40095 * 119.99909 * 59.99761 * 15 12 11 17 17 C 1.46738 * 125.62191 * 90.00498 * 16 15 12 18 18 C 1.50826 * 106.25040 * 179.97438 * 17 16 15 19 19 C 1.37578 * 133.23740 * 180.02562 * 18 17 16 20 20 C 1.38476 * 119.95420 * 179.71508 * 19 18 17 21 21 C 1.38380 * 120.19120 * 0.25727 * 20 19 18 22 22 C 1.37948 * 120.31774 * 359.97438 * 21 20 19 23 23 C 1.39619 * 119.82756 * 0.02562 * 22 21 20 24 24 C 1.34423 * 125.62644 * 270.62992 * 16 15 12 25 25 O 1.21554 * 124.85396 * 359.37118 * 24 16 15 26 26 H 0.96994 * 120.00702 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46672 * 59.99789 * 9 7 2 28 28 H 1.08996 * 109.46560 * 300.00100 * 9 7 2 29 29 H 1.09001 * 109.46715 * 60.00028 * 10 9 7 30 30 H 1.09001 * 109.47076 * 299.99852 * 10 9 7 31 31 H 1.09002 * 109.46906 * 59.99922 * 11 10 9 32 32 H 1.08996 * 109.46725 * 299.99989 * 11 10 9 33 33 H 0.96998 * 119.99772 * 240.00147 * 15 12 11 34 34 H 1.09002 * 110.10150 * 60.79793 * 17 16 15 35 35 H 1.09004 * 110.14926 * 299.21901 * 17 16 15 36 36 H 1.08002 * 120.02542 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.90666 * 180.23264 * 20 19 18 38 38 H 1.08002 * 119.84295 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.08027 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0046 12 16 2.6593 -6.3658 -0.0050 13 8 3.3552 -6.4273 1.2324 14 8 3.3570 -6.4249 -1.2416 15 7 1.7090 -7.7220 -0.0063 16 7 0.8106 -7.9468 -1.0575 17 6 1.1087 -8.6764 -2.2953 18 6 -0.1588 -8.6568 -3.1125 19 6 -0.4933 -9.1678 -4.3452 20 6 -1.7729 -8.9892 -4.8436 21 6 -2.7156 -8.2933 -4.1075 22 6 -2.3891 -7.7727 -2.8725 23 6 -1.1011 -7.9486 -2.3632 24 6 -0.4630 -7.5196 -1.1038 25 8 -1.0149 -6.8840 -0.2269 26 1 -0.4851 0.8399 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6242 -2.5575 0.8880 29 1 2.8721 -3.6050 0.8873 30 1 2.8721 -3.6035 -0.8927 31 1 0.8541 -5.0438 -0.8949 32 1 0.8536 -5.0458 0.8851 33 1 1.7744 -8.3607 0.7208 34 1 1.3902 -9.7041 -2.0658 35 1 1.9130 -8.1806 -2.8389 36 1 0.2402 -9.7114 -4.9221 37 1 -2.0358 -9.3940 -5.8098 38 1 -3.7118 -8.1570 -4.5018 39 1 -3.1280 -7.2306 -2.3010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867382231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:56 Heat of formation + Delta-G solvation = -39.579406 kcal Electronic energy + Delta-G solvation = -24934.619412 eV Core-core repulsion = 21163.876641 eV Total energy + Delta-G solvation = -3770.742771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43735 -38.51727 -37.13828 -36.64667 -35.98486 -34.65899 -33.86846 -32.16710 -31.49220 -29.56079 -27.80856 -27.08142 -23.96138 -23.70922 -22.07120 -21.02680 -20.58326 -19.50291 -18.30942 -17.89091 -17.31789 -16.71963 -16.46519 -15.81927 -15.76467 -15.60671 -15.02949 -14.69869 -14.46433 -14.28419 -14.16074 -13.68663 -13.54231 -12.92871 -12.58479 -12.48560 -12.30397 -12.23977 -12.14855 -12.03121 -11.78092 -11.55785 -11.32221 -10.99810 -10.87618 -10.84357 -10.39983 -9.99646 -9.92266 -9.65610 -9.38821 -9.34952 -9.12837 -9.08394 -8.36908 -6.01304 -4.05073 0.10393 0.39179 0.89862 1.49092 2.43226 3.09287 3.34306 3.38106 3.41076 3.42481 3.67081 3.74655 4.01948 4.31394 4.45065 4.46173 4.62127 4.85795 4.92391 5.03710 5.08398 5.15525 5.23063 5.31186 5.34547 5.53898 5.58644 5.88085 5.88536 5.93754 5.99925 6.26482 6.34394 6.43622 6.46967 6.75995 6.88808 7.62125 7.71850 7.85921 7.96354 8.35857 9.00885 9.59196 11.09777 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003505 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.138799 B = 7987.604619 C = 9347.673401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.104 4.104 11 C -0.591 4.591 12 S 2.590 3.410 13 O -0.944 6.944 14 O -0.950 6.950 15 N -0.883 5.883 16 N -0.408 5.408 17 C 0.139 3.861 18 C -0.074 4.074 19 C -0.101 4.101 20 C -0.084 4.084 21 C -0.126 4.126 22 C -0.037 4.037 23 C -0.150 4.150 24 C 0.555 3.445 25 O -0.495 6.495 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.420 0.580 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -23.906 -9.449 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.144 4.144 11 C -0.724 4.724 12 S 2.687 3.313 13 O -0.932 6.932 14 O -0.939 6.939 15 N -0.729 5.729 16 N -0.236 5.236 17 C 0.016 3.984 18 C -0.076 4.076 19 C -0.120 4.120 20 C -0.102 4.102 21 C -0.144 4.144 22 C -0.057 4.057 23 C -0.155 4.155 24 C 0.343 3.657 25 O -0.368 6.368 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.259 0.741 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.720 -23.348 -8.956 25.154 hybrid contribution -0.188 0.745 0.429 0.880 sum -2.909 -22.603 -8.527 24.332 Atomic orbital electron populations 1.69956 1.06080 1.26865 1.50345 1.25020 0.94875 0.99320 0.95112 0.86613 0.79558 0.82870 0.78718 1.20140 1.21237 1.20131 1.21207 0.93167 0.90873 1.51353 0.92422 1.19049 0.93449 0.90176 0.97950 1.21545 0.99394 0.91535 1.01924 1.30411 1.15486 1.14465 1.12083 1.06142 0.75472 0.75138 0.74567 1.93632 1.69721 1.85128 1.44749 1.93565 1.70041 1.84985 1.45336 1.55756 1.50901 1.41456 1.24804 1.46264 1.07950 1.57343 1.12080 1.20802 0.96209 0.98635 0.82764 1.20356 0.94726 0.97507 0.95059 1.20311 0.97154 1.00693 0.93810 1.21370 0.92607 0.96609 0.99607 1.21180 1.00378 0.98558 0.94304 1.20921 0.94066 0.95776 0.94892 1.19990 0.95790 1.03849 0.95835 1.18703 0.80405 0.79628 0.86994 1.90876 1.66026 1.38183 1.41674 0.92833 0.96098 0.95925 0.91429 0.91567 0.85653 0.84477 0.74140 0.87863 0.86768 0.84730 0.84733 0.84666 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.86 4.97 -27.88 -0.14 0.72 16 10 C -0.10 -2.22 5.16 -26.73 -0.14 -2.36 16 11 C -0.59 -10.48 5.65 37.16 0.21 -10.27 16 12 S 2.59 40.09 5.62 -107.50 -0.60 39.49 16 13 O -0.94 -16.50 18.08 -57.54 -1.04 -17.54 16 14 O -0.95 -16.31 18.09 -57.54 -1.04 -17.35 16 15 N -0.88 -10.86 6.64 60.35 0.40 -10.46 16 16 N -0.41 -4.96 3.71 -62.39 -0.23 -5.19 16 17 C 0.14 1.23 7.62 -5.00 -0.04 1.19 16 18 C -0.07 -0.65 6.38 -104.27 -0.66 -1.32 16 19 C -0.10 -0.64 10.03 -39.73 -0.40 -1.04 16 20 C -0.08 -0.48 10.05 -39.44 -0.40 -0.88 16 21 C -0.13 -0.86 10.02 -39.64 -0.40 -1.26 16 22 C -0.04 -0.36 10.10 -39.17 -0.40 -0.75 16 23 C -0.15 -1.68 6.26 -105.05 -0.66 -2.34 16 24 C 0.55 7.77 7.62 -12.62 -0.10 7.67 16 25 O -0.49 -8.59 17.55 5.32 0.09 -8.49 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.13 2.19 7.70 -51.92 -0.40 1.79 16 32 H 0.14 2.37 8.14 -51.93 -0.42 1.95 16 33 H 0.42 4.05 8.92 -176.25 -1.57 2.48 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -37.62 354.16 -11.06 -48.68 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.16 Total: -0.33 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -3.52 Total: -24.59 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.91 Total: -42.12 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.99 Total: -43.38 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 40.09 SS G_CDS: -0.60 Total: 39.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.62 -11.06 -48.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867382231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.102 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds