Wall clock time and date at job start Tue Mar 31 2020 14:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47046 * 240.00004 * 3 2 1 5 5 H 1.48498 * 109.46881 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46865 * 119.99780 * 3 2 1 7 7 C 1.37873 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00349 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46871 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.46959 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54409 * 68.37343 * 12 11 10 14 14 O 1.42103 * 110.54126 * 291.62616 * 12 11 10 15 15 N 1.65598 * 104.44918 * 179.97438 * 12 11 10 16 16 N 1.40095 * 119.99909 * 59.99761 * 15 12 11 17 17 C 1.46738 * 125.62191 * 90.00498 * 16 15 12 18 18 C 1.50826 * 106.25040 * 179.97438 * 17 16 15 19 19 C 1.37578 * 133.23740 * 180.02562 * 18 17 16 20 20 C 1.38476 * 119.95420 * 179.71508 * 19 18 17 21 21 C 1.38380 * 120.19120 * 0.25727 * 20 19 18 22 22 C 1.37948 * 120.31774 * 359.97438 * 21 20 19 23 23 C 1.39619 * 119.82756 * 0.02562 * 22 21 20 24 24 C 1.34423 * 125.62644 * 270.62992 * 16 15 12 25 25 O 1.21554 * 124.85396 * 359.37118 * 24 16 15 26 26 H 0.96994 * 120.00702 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46672 * 59.99789 * 9 7 2 28 28 H 1.08996 * 109.46560 * 300.00100 * 9 7 2 29 29 H 1.09001 * 109.46715 * 60.00028 * 10 9 7 30 30 H 1.09001 * 109.47076 * 299.99852 * 10 9 7 31 31 H 1.09002 * 109.46906 * 59.99922 * 11 10 9 32 32 H 1.08996 * 109.46725 * 299.99989 * 11 10 9 33 33 H 0.96998 * 119.99772 * 240.00147 * 15 12 11 34 34 H 1.09002 * 110.10150 * 60.79793 * 17 16 15 35 35 H 1.09004 * 110.14926 * 299.21901 * 17 16 15 36 36 H 1.08002 * 120.02542 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.90666 * 180.23264 * 20 19 18 38 38 H 1.08002 * 119.84295 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.08027 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0046 12 16 2.6593 -6.3658 -0.0050 13 8 3.3552 -6.4273 1.2324 14 8 3.3570 -6.4249 -1.2416 15 7 1.7090 -7.7220 -0.0063 16 7 0.8106 -7.9468 -1.0575 17 6 1.1087 -8.6764 -2.2953 18 6 -0.1588 -8.6568 -3.1125 19 6 -0.4933 -9.1678 -4.3452 20 6 -1.7729 -8.9892 -4.8436 21 6 -2.7156 -8.2933 -4.1075 22 6 -2.3891 -7.7727 -2.8725 23 6 -1.1011 -7.9486 -2.3632 24 6 -0.4630 -7.5196 -1.1038 25 8 -1.0149 -6.8840 -0.2269 26 1 -0.4851 0.8399 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6242 -2.5575 0.8880 29 1 2.8721 -3.6050 0.8873 30 1 2.8721 -3.6035 -0.8927 31 1 0.8541 -5.0438 -0.8949 32 1 0.8536 -5.0458 0.8851 33 1 1.7744 -8.3607 0.7208 34 1 1.3902 -9.7041 -2.0658 35 1 1.9130 -8.1806 -2.8389 36 1 0.2402 -9.7114 -4.9221 37 1 -2.0358 -9.3940 -5.8098 38 1 -3.7118 -8.1570 -4.5018 39 1 -3.1280 -7.2306 -2.3010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867382231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:55 Heat of formation + Delta-G solvation = -67.352638 kcal Electronic energy + Delta-G solvation = -24935.823750 eV Core-core repulsion = 21163.876641 eV Total energy + Delta-G solvation = -3771.947109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26596 -39.30540 -38.49531 -37.68972 -37.36324 -36.56803 -34.73965 -34.24270 -32.10299 -30.36478 -29.78101 -27.84542 -25.72494 -24.69488 -22.76068 -22.54702 -21.71306 -20.75728 -19.36680 -19.13185 -18.63413 -18.08174 -17.43698 -17.22915 -16.94689 -16.70540 -16.49101 -15.93969 -15.67384 -15.44976 -14.91555 -14.64676 -14.50446 -14.19513 -14.11662 -13.93176 -13.69989 -13.48713 -13.41611 -13.33196 -13.09680 -12.81837 -12.76249 -12.73527 -12.43030 -12.19526 -11.88069 -11.84945 -11.45188 -11.19594 -10.90214 -10.61135 -10.56615 -10.00071 -9.75868 -8.24718 -6.38104 -1.18817 -0.30838 0.33320 0.43309 1.38329 1.42376 1.50322 1.55499 1.96633 2.36882 2.42007 2.77240 2.94815 3.06396 3.08206 3.27049 3.59644 3.73644 3.86925 4.19253 4.23767 4.30110 4.35771 4.42657 4.49524 4.52141 4.70309 4.76789 4.84244 4.97435 5.02147 5.17354 5.36967 5.38836 5.45574 5.52849 5.52918 5.74077 5.81079 5.89741 6.13168 6.77385 6.85124 7.31794 8.87158 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003505 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.138799 B = 7987.604619 C = 9347.673401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.033 3.967 10 C -0.102 4.102 11 C -0.603 4.603 12 S 2.636 3.364 13 O -0.959 6.959 14 O -0.959 6.959 15 N -0.875 5.875 16 N -0.409 5.409 17 C 0.132 3.868 18 C -0.072 4.072 19 C -0.096 4.096 20 C -0.071 4.071 21 C -0.126 4.126 22 C -0.058 4.058 23 C -0.187 4.187 24 C 0.542 3.458 25 O -0.548 6.548 26 H 0.265 0.735 27 H -0.005 1.005 28 H -0.004 1.004 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.436 0.564 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -25.661 -11.682 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.085 0.915 9 C -0.006 4.006 10 C -0.141 4.141 11 C -0.734 4.734 12 S 2.729 3.271 13 O -0.947 6.947 14 O -0.948 6.948 15 N -0.724 5.724 16 N -0.237 5.237 17 C 0.011 3.989 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.089 4.089 21 C -0.144 4.144 22 C -0.077 4.077 23 C -0.192 4.192 24 C 0.332 3.668 25 O -0.425 6.425 26 H 0.074 0.926 27 H 0.013 0.987 28 H 0.014 0.986 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.278 0.722 34 H 0.157 0.843 35 H 0.137 0.863 36 H 0.188 0.812 37 H 0.190 0.810 38 H 0.177 0.823 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.347 -25.117 -11.198 27.533 hybrid contribution -0.700 1.164 1.032 1.705 sum -2.047 -23.953 -10.166 26.102 Atomic orbital electron populations 1.70102 1.07957 1.28092 1.51091 1.26049 0.95823 1.03630 0.94330 0.85426 0.78241 0.77560 0.79393 1.18842 1.20629 1.19017 1.21692 0.93891 0.92094 1.51523 0.91510 1.18926 0.93965 0.92310 0.95382 1.21344 0.98513 0.91481 1.02745 1.30447 1.16281 1.14806 1.11876 1.04707 0.74312 0.74369 0.73737 1.93608 1.70106 1.85420 1.45604 1.93549 1.70136 1.85177 1.45960 1.55219 1.50527 1.40667 1.26024 1.46572 1.07267 1.57100 1.12765 1.21134 0.96459 1.00073 0.81213 1.20509 0.93753 0.97401 0.95775 1.20773 0.98182 0.99748 0.92693 1.21880 0.91814 0.94675 1.00489 1.21507 1.01960 0.97848 0.93066 1.21068 0.93548 0.96799 0.96323 1.19975 0.97280 1.06510 0.95475 1.19385 0.80994 0.78870 0.87528 1.90830 1.67359 1.40726 1.43579 0.92584 0.98669 0.98608 0.90611 0.90654 0.86071 0.84794 0.72209 0.84303 0.86272 0.81198 0.80974 0.82312 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.53 13.29 21.45 0.28 -58.25 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -32.78 9.11 25.60 0.23 -32.55 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.82 4.97 29.85 0.15 1.97 16 10 C -0.10 -4.48 5.16 30.60 0.16 -4.32 16 11 C -0.60 -22.40 5.65 71.98 0.41 -21.99 16 12 S 2.64 80.68 5.62 -56.49 -0.32 80.36 16 13 O -0.96 -32.83 18.08 -127.65 -2.31 -35.13 16 14 O -0.96 -31.76 18.09 -127.65 -2.31 -34.07 16 15 N -0.87 -21.02 6.64 37.02 0.25 -20.78 16 16 N -0.41 -9.82 3.71 -469.78 -1.74 -11.57 16 17 C 0.13 2.07 7.62 85.63 0.65 2.72 16 18 C -0.07 -1.13 6.38 -19.63 -0.13 -1.26 16 19 C -0.10 -0.85 10.03 22.17 0.22 -0.63 16 20 C -0.07 -0.54 10.05 22.36 0.22 -0.31 16 21 C -0.13 -1.48 10.02 22.23 0.22 -1.26 16 22 C -0.06 -1.14 10.10 22.53 0.23 -0.91 16 23 C -0.19 -4.29 6.26 -20.14 -0.13 -4.42 16 24 C 0.54 15.94 7.62 86.75 0.66 16.60 16 25 O -0.55 -20.64 17.55 -3.88 -0.07 -20.71 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.12 4.54 7.70 -2.39 -0.02 4.53 16 32 H 0.13 4.99 8.14 -2.39 -0.02 4.97 16 33 H 0.44 7.99 8.92 -217.37 -1.94 6.05 16 34 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 37 H 0.17 0.07 8.06 -2.91 -0.02 0.04 16 38 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 39 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -84.78 354.16 -1.68 -86.46 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.86 Total: 12.31 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.37 Total: -45.90 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -1.21 Total: -90.59 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -4.69 Total: -89.91 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 80.68 SS G_CDS: -0.32 Total: 80.36 kcal Total: -84.78 -1.68 -86.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867382231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.108 kcal (2) G-P(sol) polarization free energy of solvation -84.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds