Wall clock time and date at job start Tue Mar 31 2020 13:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35430 * 117.00155 * 2 1 4 4 C 1.39028 * 119.97886 * 0.02923 * 3 2 1 5 5 C 1.37518 * 120.27201 * 179.97438 * 4 3 2 6 6 C 1.40260 * 120.22936 * 359.97366 * 5 4 3 7 7 C 1.46918 * 120.01732 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00395 * 0.02562 * 7 6 5 9 9 C 1.39583 * 119.95975 * 359.75022 * 6 5 4 10 10 C 1.39248 * 119.72586 * 0.52366 * 9 6 5 11 11 C 1.47456 * 120.11236 * 179.74788 * 10 9 6 12 12 O 1.21503 * 119.99741 * 179.45386 * 11 10 9 13 13 O 1.34740 * 119.99914 * 359.72377 * 11 10 9 14 14 C 1.45198 * 116.99705 * 180.02562 * 13 11 10 15 15 C 1.53010 * 109.46831 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47000 * 180.02562 * 15 14 13 17 17 S 1.80994 * 109.47108 * 180.02562 * 16 15 14 18 18 C 1.76195 * 99.99931 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00515 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99628 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47303 * 89.99968 * 22 20 18 24 24 H 1.48503 * 109.46873 * 209.99594 * 22 20 18 25 25 H 1.48502 * 109.46930 * 329.99439 * 22 20 18 26 26 H 1.08993 * 109.47064 * 299.99174 * 1 2 3 27 27 H 1.08995 * 109.47164 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.85763 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.88045 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.99898 * 180.02562 * 7 6 5 32 32 H 1.07998 * 120.13383 * 180.29511 * 9 6 5 33 33 H 1.09006 * 109.47417 * 299.99859 * 14 13 11 34 34 H 1.08998 * 109.47370 * 60.00384 * 14 13 11 35 35 H 1.08994 * 109.47176 * 299.99793 * 15 14 13 36 36 H 1.08998 * 109.47090 * 59.99894 * 15 14 13 37 37 H 1.09007 * 109.46671 * 300.00040 * 16 15 14 38 38 H 1.09000 * 109.46837 * 59.99434 * 16 15 14 39 39 H 0.97004 * 119.99374 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 6 1.2863 2.3724 0.0006 5 6 1.9043 3.6008 0.0011 6 6 3.3043 3.6870 0.0016 7 6 3.9597 5.0019 0.0016 8 8 3.2903 6.0132 0.0017 9 6 4.0743 2.5228 0.0068 10 6 3.4467 1.2798 0.0005 11 6 4.2518 0.0445 0.0003 12 8 3.7020 -1.0390 0.0048 13 8 5.5973 0.1172 0.0007 14 6 6.3253 -1.1390 -0.0001 15 6 7.8292 -0.8569 0.0011 16 6 8.5964 -2.1807 -0.0004 17 16 10.3753 -1.8470 0.0018 18 6 10.9959 -3.4960 0.0005 19 1 10.3108 -4.3309 -0.0008 20 6 12.3654 -3.7222 0.0021 21 7 13.2005 -2.7046 0.0042 22 14 13.0234 -5.4704 -0.0001 23 1 13.1998 -5.9312 -1.4006 24 1 14.3316 -5.5078 0.7018 25 1 12.0619 -6.3620 0.6971 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2079 2.3128 0.0015 30 1 1.3096 4.5024 0.0020 31 1 5.0378 5.0678 0.0016 32 1 5.1524 2.5858 0.0120 33 1 6.0627 -1.7118 0.8894 34 1 6.0632 -1.7103 -0.8906 35 1 8.0921 -0.2841 -0.8881 36 1 8.0910 -0.2858 0.8918 37 1 8.3335 -2.7539 0.8887 38 1 8.3344 -2.7514 -0.8913 39 1 14.1575 -2.8627 0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869784225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:41 Heat of formation + Delta-G solvation = -140.572186 kcal Electronic energy + Delta-G solvation = -23292.799358 eV Core-core repulsion = 19485.384461 eV Total energy + Delta-G solvation = -3807.414898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19851 -39.91905 -39.40575 -37.47775 -36.56382 -33.54345 -32.45178 -32.09134 -31.25409 -28.10866 -26.74303 -25.54179 -24.91393 -24.07272 -22.28984 -21.31797 -20.57487 -18.80540 -17.82488 -17.51817 -17.38543 -16.70572 -16.44132 -16.19794 -16.08546 -15.45176 -14.98646 -14.82342 -14.71135 -14.51381 -14.35872 -13.96702 -13.46611 -13.27285 -13.15375 -12.70450 -12.60462 -12.54169 -12.10643 -11.78925 -11.61905 -11.35146 -11.13953 -10.98390 -10.91058 -10.70286 -10.53510 -10.28024 -10.18092 -9.73786 -9.64111 -9.08207 -8.88694 -8.36637 -6.57144 -6.25502 -3.96414 0.11116 0.39817 1.80871 2.46937 2.50369 2.61854 3.20961 3.21745 3.28484 3.30874 3.53034 3.82085 4.08180 4.18086 4.19795 4.44277 4.62894 4.64811 4.65855 4.88898 4.94111 5.05125 5.10181 5.13152 5.19434 5.21915 5.35271 5.41677 5.48821 5.54006 5.72726 5.77541 5.90683 5.97646 6.15346 6.41752 6.44480 6.66533 6.71056 7.02081 7.58615 7.71911 8.34296 9.21030 10.82636 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.002076 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.904402 B =13481.159833 C =14904.011333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.277 6.277 3 C 0.222 3.778 4 C -0.238 4.238 5 C 0.013 3.987 6 C -0.248 4.248 7 C 0.390 3.610 8 O -0.467 6.467 9 C 0.031 3.969 10 C -0.172 4.172 11 C 0.507 3.493 12 O -0.489 6.489 13 O -0.354 6.354 14 C 0.075 3.925 15 C -0.098 4.098 16 C -0.115 4.115 17 S -0.124 6.124 18 C -0.518 4.518 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.869 5.869 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.675 11.965 -0.008 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.186 6.186 3 C 0.172 3.828 4 C -0.257 4.257 5 C -0.005 4.005 6 C -0.249 4.249 7 C 0.249 3.751 8 O -0.341 6.341 9 C 0.013 3.987 10 C -0.174 4.174 11 C 0.351 3.649 12 O -0.377 6.377 13 O -0.272 6.272 14 C 0.001 3.999 15 C -0.136 4.136 16 C -0.263 4.263 17 S 0.104 5.896 18 C -0.666 4.666 19 H 0.092 0.908 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.128 0.872 32 H 0.177 0.823 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.327 12.967 0.002 28.454 hybrid contribution -0.467 -2.518 -0.012 2.561 sum -25.794 10.450 -0.010 27.831 Atomic orbital electron populations 1.23292 0.77726 1.04991 1.01690 1.86342 1.21716 1.25361 1.85208 1.19369 0.90683 0.85261 0.87468 1.21202 1.00800 0.91460 1.12217 1.21422 0.93835 0.97665 0.87614 1.20841 0.94552 0.96303 1.13238 1.23959 0.95347 0.86060 0.69727 1.90532 1.69614 1.38430 1.35536 1.21692 1.01165 0.89265 0.86572 1.18447 0.89562 0.92519 1.16913 1.20645 0.81541 0.88798 0.73949 1.90892 1.72565 1.29556 1.44664 1.86480 1.18703 1.37898 1.84070 1.23280 0.91525 0.82434 1.02707 1.21290 0.89687 0.98305 1.04315 1.23182 1.01724 0.98050 1.03368 1.84633 0.93888 1.14162 1.96883 1.22695 0.94223 0.91037 1.58657 0.90841 1.25022 0.95867 0.98364 0.94537 1.70020 1.03006 1.30314 1.47141 0.86146 0.78262 0.82627 0.78390 1.20245 1.20740 1.19663 0.92033 0.92037 0.87428 0.83855 0.84023 0.87214 0.82344 0.91082 0.91083 0.90307 0.90300 0.91725 0.91723 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.80 101.05 0.99 1.08 16 2 O -0.28 -2.86 8.54 -39.93 -0.34 -3.20 16 3 C 0.22 2.13 6.71 -38.45 -0.26 1.88 16 4 C -0.24 -1.65 9.00 -39.55 -0.36 -2.00 16 5 C 0.01 0.09 9.58 -39.08 -0.37 -0.28 16 6 C -0.25 -1.83 5.86 -105.12 -0.62 -2.44 16 7 C 0.39 2.70 11.43 34.24 0.39 3.09 16 8 O -0.47 -4.89 17.15 5.55 0.10 -4.80 16 9 C 0.03 0.25 9.35 -38.70 -0.36 -0.11 16 10 C -0.17 -1.83 5.88 -104.93 -0.62 -2.45 16 11 C 0.51 6.84 7.89 34.49 0.27 7.11 16 12 O -0.49 -7.93 14.94 -26.61 -0.40 -8.32 16 13 O -0.35 -4.70 9.46 -40.60 -0.38 -5.08 16 14 C 0.08 1.06 5.48 37.16 0.20 1.27 16 15 C -0.10 -1.53 5.60 -26.72 -0.15 -1.68 16 16 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 17 S -0.12 -3.17 21.44 -107.50 -2.30 -5.47 16 18 C -0.52 -14.67 9.50 30.94 0.29 -14.37 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 21 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 27 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.14 0.61 6.27 -52.49 -0.33 0.28 16 30 H 0.14 0.85 7.63 -52.48 -0.40 0.45 16 31 H 0.11 0.40 8.06 -52.48 -0.42 -0.03 16 32 H 0.16 0.97 7.60 -52.49 -0.40 0.57 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 38 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -35.31 360.81 -7.50 -42.81 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.85 Total: -3.74 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.47 Total: -9.03 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.73 Total: -24.94 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.03 Total: -21.40 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.30 Total: -5.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.31 -7.50 -42.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869784225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.763 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds