Wall clock time and date at job start Tue Mar 31 2020 13:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35430 * 117.00155 * 2 1 4 4 C 1.39028 * 119.97886 * 0.02923 * 3 2 1 5 5 C 1.37518 * 120.27201 * 179.97438 * 4 3 2 6 6 C 1.40260 * 120.22936 * 359.97366 * 5 4 3 7 7 C 1.46918 * 120.01732 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00395 * 0.02562 * 7 6 5 9 9 C 1.39583 * 119.95975 * 359.75022 * 6 5 4 10 10 C 1.39248 * 119.72586 * 0.52366 * 9 6 5 11 11 C 1.47456 * 120.11236 * 179.74788 * 10 9 6 12 12 O 1.21503 * 119.99741 * 179.45386 * 11 10 9 13 13 O 1.34740 * 119.99914 * 359.72377 * 11 10 9 14 14 C 1.45198 * 116.99705 * 180.02562 * 13 11 10 15 15 C 1.53010 * 109.46831 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47000 * 180.02562 * 15 14 13 17 17 S 1.80994 * 109.47108 * 180.02562 * 16 15 14 18 18 C 1.76195 * 99.99931 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00515 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99628 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47303 * 89.99968 * 22 20 18 24 24 H 1.48503 * 109.46873 * 209.99594 * 22 20 18 25 25 H 1.48502 * 109.46930 * 329.99439 * 22 20 18 26 26 H 1.08993 * 109.47064 * 299.99174 * 1 2 3 27 27 H 1.08995 * 109.47164 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.85763 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.88045 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.99898 * 180.02562 * 7 6 5 32 32 H 1.07998 * 120.13383 * 180.29511 * 9 6 5 33 33 H 1.09006 * 109.47417 * 299.99859 * 14 13 11 34 34 H 1.08998 * 109.47370 * 60.00384 * 14 13 11 35 35 H 1.08994 * 109.47176 * 299.99793 * 15 14 13 36 36 H 1.08998 * 109.47090 * 59.99894 * 15 14 13 37 37 H 1.09007 * 109.46671 * 300.00040 * 16 15 14 38 38 H 1.09000 * 109.46837 * 59.99434 * 16 15 14 39 39 H 0.97004 * 119.99374 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 6 1.2863 2.3724 0.0006 5 6 1.9043 3.6008 0.0011 6 6 3.3043 3.6870 0.0016 7 6 3.9597 5.0019 0.0016 8 8 3.2903 6.0132 0.0017 9 6 4.0743 2.5228 0.0068 10 6 3.4467 1.2798 0.0005 11 6 4.2518 0.0445 0.0003 12 8 3.7020 -1.0390 0.0048 13 8 5.5973 0.1172 0.0007 14 6 6.3253 -1.1390 -0.0001 15 6 7.8292 -0.8569 0.0011 16 6 8.5964 -2.1807 -0.0004 17 16 10.3753 -1.8470 0.0018 18 6 10.9959 -3.4960 0.0005 19 1 10.3108 -4.3309 -0.0008 20 6 12.3654 -3.7222 0.0021 21 7 13.2005 -2.7046 0.0042 22 14 13.0234 -5.4704 -0.0001 23 1 13.1998 -5.9312 -1.4006 24 1 14.3316 -5.5078 0.7018 25 1 12.0619 -6.3620 0.6971 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2079 2.3128 0.0015 30 1 1.3096 4.5024 0.0020 31 1 5.0378 5.0678 0.0016 32 1 5.1524 2.5858 0.0120 33 1 6.0627 -1.7118 0.8894 34 1 6.0632 -1.7103 -0.8906 35 1 8.0921 -0.2841 -0.8881 36 1 8.0910 -0.2858 0.8918 37 1 8.3335 -2.7539 0.8887 38 1 8.3344 -2.7514 -0.8913 39 1 14.1575 -2.8627 0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869784225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:40 Heat of formation + Delta-G solvation = -161.112073 kcal Electronic energy + Delta-G solvation = -23293.690035 eV Core-core repulsion = 19485.384461 eV Total energy + Delta-G solvation = -3808.305574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96052 -40.82476 -40.03375 -38.11974 -37.67211 -34.88796 -34.57032 -32.79000 -31.85487 -28.65970 -28.12687 -27.45551 -25.62022 -24.83185 -23.07857 -22.57935 -21.35307 -19.63456 -19.38107 -18.64059 -18.17944 -17.74610 -17.32126 -16.88837 -16.86052 -16.78514 -16.16031 -15.98959 -15.89614 -15.50568 -15.24523 -14.91424 -14.60723 -14.16935 -14.14649 -13.86571 -13.77267 -13.47267 -13.12915 -13.03497 -12.94188 -12.60768 -12.41530 -12.35926 -12.35016 -12.12826 -11.66992 -11.48583 -11.38385 -11.13965 -10.78858 -10.36676 -10.34675 -9.51475 -8.66165 -8.37316 -6.13136 -0.53900 -0.22410 1.15597 1.26902 1.40209 1.41576 1.51865 1.69055 1.84219 2.09219 2.28003 2.66154 2.97254 3.27137 3.31657 3.44400 3.61686 3.79360 3.88166 4.00963 4.04567 4.16222 4.22919 4.27054 4.33523 4.35074 4.47286 4.55480 4.67358 4.70441 4.71464 4.81134 4.96392 5.05268 5.14540 5.17872 5.40351 5.41346 5.42412 6.15066 6.18717 6.49474 6.68912 7.05437 8.71903 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.002076 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.904402 B =13481.159833 C =14904.011333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.309 6.309 3 C 0.212 3.788 4 C -0.229 4.229 5 C 0.014 3.986 6 C -0.252 4.252 7 C 0.399 3.601 8 O -0.505 6.505 9 C 0.042 3.958 10 C -0.201 4.201 11 C 0.507 3.493 12 O -0.524 6.524 13 O -0.350 6.350 14 C 0.083 3.917 15 C -0.084 4.084 16 C -0.093 4.093 17 S -0.181 6.181 18 C -0.541 4.541 19 H 0.073 0.927 20 C 0.016 3.984 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.264 1.264 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.172 0.828 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.866 12.250 -0.018 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.162 3.838 4 C -0.248 4.248 5 C -0.004 4.004 6 C -0.253 4.253 7 C 0.261 3.739 8 O -0.381 6.381 9 C 0.024 3.976 10 C -0.202 4.202 11 C 0.353 3.647 12 O -0.414 6.414 13 O -0.267 6.267 14 C 0.008 3.992 15 C -0.123 4.123 16 C -0.242 4.242 17 S 0.047 5.953 18 C -0.688 4.688 19 H 0.091 0.909 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.815 3.185 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.188 1.188 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.189 0.811 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.193 0.807 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.525 13.264 -0.009 29.656 hybrid contribution -0.237 -2.543 -0.009 2.554 sum -26.761 10.722 -0.018 28.829 Atomic orbital electron populations 1.23586 0.75528 1.06084 1.03381 1.86299 1.24199 1.26191 1.85266 1.19597 0.90611 0.85953 0.87618 1.21437 1.02023 0.90323 1.10980 1.21701 0.94058 0.98172 0.86448 1.21003 0.94850 0.96430 1.13059 1.24464 0.96715 0.84969 0.67789 1.90534 1.70607 1.39429 1.37530 1.21811 1.02012 0.88411 0.85409 1.18501 0.89995 0.92029 1.19723 1.21186 0.81235 0.89501 0.72770 1.90868 1.72914 1.31000 1.46642 1.86465 1.19020 1.37068 1.84121 1.23025 0.90459 0.82904 1.02840 1.21104 0.90283 0.96126 1.04763 1.23077 0.97292 1.00240 1.03575 1.84580 0.99406 1.14246 1.97046 1.23055 0.94957 0.91901 1.58920 0.90875 1.26047 0.96072 1.03020 0.93782 1.70144 1.03437 1.32733 1.47894 0.85027 0.77711 0.76940 0.78806 1.19318 1.19909 1.18843 0.90286 0.90289 0.86829 0.81112 0.82818 0.83425 0.80704 0.91038 0.91017 0.89883 0.89885 0.91482 0.91447 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.18 16 2 O -0.31 -6.25 8.54 -66.27 -0.57 -6.82 16 3 C 0.21 3.87 6.71 23.00 0.15 4.03 16 4 C -0.23 -2.70 9.00 22.29 0.20 -2.50 16 5 C 0.01 0.17 9.58 22.59 0.22 0.39 16 6 C -0.25 -3.20 5.86 -20.19 -0.12 -3.31 16 7 C 0.40 4.61 11.43 70.09 0.80 5.41 16 8 O -0.50 -9.76 17.15 -3.04 -0.05 -9.81 16 9 C 0.04 0.60 9.35 22.84 0.21 0.81 16 10 C -0.20 -4.10 5.88 -20.06 -0.12 -4.22 16 11 C 0.51 13.57 7.89 70.25 0.55 14.12 16 12 O -0.52 -17.21 14.94 26.85 0.40 -16.81 16 13 O -0.35 -8.98 9.46 -56.51 -0.53 -9.52 16 14 C 0.08 2.28 5.48 71.99 0.39 2.67 16 15 C -0.08 -2.57 5.60 30.60 0.17 -2.40 16 16 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 17 S -0.18 -9.40 21.44 -56.49 -1.21 -10.62 16 18 C -0.54 -30.84 9.50 67.96 0.65 -30.19 16 19 H 0.07 4.03 7.80 -2.91 -0.02 4.00 16 20 C 0.02 0.90 5.49 84.86 0.47 1.36 16 21 N -0.91 -54.00 13.22 21.65 0.29 -53.71 16 22 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 26 H 0.08 0.42 7.65 -2.39 -0.02 0.40 16 27 H 0.08 0.42 7.65 -2.39 -0.02 0.40 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.17 0.94 6.27 -2.91 -0.02 0.93 16 30 H 0.15 1.49 7.63 -2.91 -0.02 1.46 16 31 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.18 1.77 7.60 -2.91 -0.02 1.75 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.45 360.81 6.52 -70.93 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.07 Total: 6.55 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 5.10 Total: -15.84 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.29 Total: -53.71 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.75 Total: -42.96 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.21 Total: -10.62 kcal Total: -77.45 6.52 -70.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869784225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.184 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds