Wall clock time and date at job start Tue Mar 31 2020 13:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.47257 * 2 1 4 4 C 1.34229 * 117.00356 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99586 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99951 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47243 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46710 * 54.99913 * 7 6 4 9 9 C 1.50702 * 109.47761 * 174.99780 * 7 6 4 10 10 H 1.07996 * 120.00469 * 240.00455 * 9 7 6 11 11 C 1.37879 * 119.99480 * 60.00050 * 9 7 6 12 12 N 1.31511 * 120.00212 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99859 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47092 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46999 * 119.99873 * 13 11 9 16 16 H 1.48489 * 109.47287 * 240.00130 * 13 11 9 17 17 O 1.42896 * 109.47173 * 295.00258 * 7 6 4 18 18 C 1.35011 * 117.00387 * 149.99375 * 17 7 6 19 19 O 1.21725 * 119.99398 * 0.02562 * 18 17 7 20 20 C 1.41214 * 120.00256 * 179.97438 * 18 17 7 21 21 C 1.35786 * 119.99785 * 187.26515 * 20 18 17 22 22 C 1.41498 * 119.99819 * 10.54145 * 21 20 18 23 23 C 1.37096 * 125.47650 * 224.30133 * 22 21 20 24 24 C 1.37394 * 113.22190 * 179.80656 * 23 22 21 25 25 C 1.33893 * 115.13146 * 0.49421 * 24 23 22 26 26 S 1.70611 * 111.01514 * 359.72337 * 25 24 23 27 27 H 1.08995 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46643 * 299.99637 * 1 2 3 29 29 H 1.09000 * 109.46898 * 59.99813 * 1 2 3 30 30 H 1.09003 * 109.47001 * 240.00160 * 2 1 3 31 31 H 1.08994 * 109.47290 * 120.00398 * 2 1 3 32 32 H 1.09006 * 109.47545 * 60.00058 * 6 4 3 33 33 H 1.09000 * 109.47586 * 299.99688 * 6 4 3 34 34 H 0.97003 * 120.00093 * 179.97438 * 12 11 9 35 35 H 1.08001 * 119.99822 * 7.27107 * 20 18 17 36 36 H 1.07998 * 119.99228 * 190.26446 * 21 20 18 37 37 H 1.08001 * 123.38471 * 359.97438 * 23 22 21 38 38 H 1.08000 * 122.43907 * 180.19929 * 24 23 22 39 39 H 1.07994 * 124.49207 * 179.72924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8575 -0.0001 8 1 5.7805 2.2502 -0.8422 9 6 6.0244 4.2447 -0.1235 10 1 6.6591 4.4935 -0.9611 11 6 5.7408 5.1963 0.8332 12 7 4.9683 4.8932 1.8534 13 14 6.4538 6.9160 0.6800 14 1 7.2834 7.0003 -0.5488 15 1 5.3487 7.9047 0.5994 16 1 7.2957 7.2103 1.8672 17 8 5.8946 2.2634 1.2206 18 6 7.0459 1.5596 1.1750 19 8 7.6538 1.4546 0.1257 20 6 7.5452 0.9462 2.3449 21 6 8.7724 0.3650 2.3358 22 6 9.6409 0.5632 1.2365 23 6 10.3797 -0.4134 0.6200 24 6 11.1352 0.0581 -0.4263 25 6 11.0310 1.3731 -0.6557 26 16 9.9520 2.1028 0.4463 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.5852 3.4691 0.8905 33 1 3.5844 3.4701 -0.8895 34 1 4.7691 5.5626 2.5266 35 1 6.9510 0.9393 3.2467 36 1 9.0871 -0.2448 3.1697 37 1 10.3669 -1.4495 0.9244 38 1 11.7708 -0.5843 -1.0176 39 1 11.5596 1.9018 -1.4350 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870616638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:38 Heat of formation + Delta-G solvation = -111.770159 kcal Electronic energy + Delta-G solvation = -25398.282003 eV Core-core repulsion = 21592.116055 eV Total energy + Delta-G solvation = -3806.165948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85215 -39.24740 -37.47425 -36.26179 -35.44029 -33.24483 -33.01629 -31.57746 -30.27679 -28.47203 -26.27343 -24.76711 -23.31976 -22.68285 -21.48036 -19.83573 -19.37935 -19.10368 -17.37702 -17.12029 -16.52359 -16.12022 -15.84610 -15.49245 -15.18473 -14.78692 -14.44989 -14.14808 -13.85969 -13.69875 -12.96522 -12.77742 -12.62539 -12.51674 -12.32952 -12.16806 -11.95988 -11.71007 -11.62570 -11.40238 -11.25850 -11.05020 -10.88969 -10.73811 -10.34648 -10.21908 -10.12661 -9.68402 -9.63742 -9.38177 -9.12772 -8.74147 -8.69959 -7.90406 -7.27527 -6.21932 -4.38707 0.74157 2.01658 2.39801 2.63021 3.03562 3.16521 3.18104 3.28080 3.32365 3.35139 4.11750 4.25970 4.29444 5.09527 5.10953 5.16650 5.29502 5.39852 5.41734 5.49426 5.61562 5.78659 5.85194 5.90544 5.93231 6.05739 6.10669 6.20842 6.37605 6.50490 6.52455 6.67809 6.77431 6.89230 7.01397 7.08989 7.32432 7.70407 7.98812 8.05578 8.53389 8.68816 9.17939 9.38855 10.80550 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.005151 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.166660 B = 5434.530343 C = 7529.873399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.516 6.516 6 C -0.103 4.103 7 C 0.229 3.771 8 H 0.044 0.956 9 C -0.544 4.544 10 H 0.069 0.931 11 C 0.081 3.919 12 N -0.862 5.862 13 Si 0.893 3.107 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.280 1.280 17 O -0.319 6.319 18 C 0.480 3.520 19 O -0.512 6.512 20 C -0.175 4.175 21 C -0.007 4.007 22 C -0.198 4.198 23 C -0.119 4.119 24 C -0.157 4.157 25 C -0.278 4.278 26 S 0.300 5.700 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.266 0.734 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -7.350 0.768 7.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.175 3.825 8 H 0.062 0.938 9 C -0.581 4.581 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.498 5.498 13 Si 0.719 3.281 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.206 1.206 17 O -0.234 6.234 18 C 0.327 3.673 19 O -0.407 6.407 20 C -0.198 4.198 21 C -0.027 4.027 22 C -0.316 4.316 23 C -0.150 4.150 24 C -0.189 4.189 25 C -0.416 4.416 26 S 0.572 5.428 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.237 -6.062 0.785 6.237 hybrid contribution 0.750 -0.825 -0.410 1.188 sum 1.987 -6.887 0.375 7.178 Atomic orbital electron populations 1.21775 0.93308 1.02301 1.03322 1.22851 0.94836 0.81854 1.02012 1.86579 1.26191 1.30930 1.84758 1.24950 0.79442 0.94369 0.71126 1.90598 1.60219 1.43667 1.45871 1.21902 0.96965 0.88007 1.07141 1.19616 0.87927 0.92603 0.82323 0.93843 1.21424 1.32110 0.94426 1.10148 0.91288 1.25081 0.93922 0.98937 0.94543 1.69876 1.34704 1.34319 1.10943 0.86522 0.79264 0.83749 0.78527 1.19392 1.20568 1.20627 1.86304 1.36721 1.59399 1.40977 1.19666 0.81368 0.77143 0.89128 1.90887 1.56811 1.59674 1.33311 1.21779 0.97219 1.02036 0.98721 1.20617 0.91597 0.94994 0.95514 1.22556 1.05755 0.99057 1.04282 1.20549 0.97837 0.99085 0.97556 1.19673 1.03927 0.94878 1.00444 1.25341 1.07505 1.00382 1.08344 1.83333 1.29711 1.06988 1.22729 0.90867 0.91594 0.91717 0.91915 0.91772 0.84251 0.88036 0.92408 0.84445 0.84264 0.84858 0.85590 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.86 10.22 -39.26 -0.40 -7.26 16 4 C 0.46 9.91 7.84 36.00 0.28 10.19 16 5 O -0.52 -12.35 15.17 -24.05 -0.36 -12.71 16 6 C -0.10 -2.34 5.22 -27.89 -0.15 -2.48 16 7 C 0.23 5.84 1.62 -27.88 -0.05 5.80 16 8 H 0.04 1.17 6.93 -51.93 -0.36 0.81 16 9 C -0.54 -14.39 8.90 -34.44 -0.31 -14.69 16 10 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 11 C 0.08 2.10 5.24 -17.82 -0.09 2.00 16 12 N -0.86 -22.53 10.93 55.43 0.61 -21.92 16 13 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 O -0.32 -8.19 8.37 -46.70 -0.39 -8.58 16 18 C 0.48 11.30 7.15 31.86 0.23 11.53 16 19 O -0.51 -12.61 10.89 -19.44 -0.21 -12.82 16 20 C -0.18 -3.31 9.95 -39.33 -0.39 -3.70 16 21 C -0.01 -0.12 9.89 -39.22 -0.39 -0.50 16 22 C -0.20 -3.46 4.60 -38.76 -0.18 -3.64 16 23 C -0.12 -1.87 10.25 -40.30 -0.41 -2.29 16 24 C -0.16 -2.40 10.14 -41.42 -0.42 -2.82 16 25 C -0.28 -4.46 10.92 29.21 0.32 -4.14 16 26 S 0.30 5.53 19.38 -107.50 -2.08 3.44 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.14 3.38 6.22 -51.93 -0.32 3.06 16 33 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -31.09 352.42 -8.37 -39.47 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.88 Total: 4.99 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.94 Total: -4.90 kcal Atomic # 7 Polarization: -22.53 SS G_CDS: 0.61 Total: -21.92 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.37 Total: -41.38 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -2.08 Total: 3.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.09 -8.37 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.302 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds