Wall clock time and date at job start Tue Mar 31 2020 13:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.47257 * 2 1 4 4 C 1.34229 * 117.00356 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99586 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99951 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47243 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46710 * 54.99913 * 7 6 4 9 9 C 1.50702 * 109.47761 * 174.99780 * 7 6 4 10 10 H 1.07996 * 120.00469 * 240.00455 * 9 7 6 11 11 C 1.37879 * 119.99480 * 60.00050 * 9 7 6 12 12 N 1.31511 * 120.00212 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99859 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47092 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46999 * 119.99873 * 13 11 9 16 16 H 1.48489 * 109.47287 * 240.00130 * 13 11 9 17 17 O 1.42896 * 109.47173 * 295.00258 * 7 6 4 18 18 C 1.35011 * 117.00387 * 149.99375 * 17 7 6 19 19 O 1.21725 * 119.99398 * 0.02562 * 18 17 7 20 20 C 1.41214 * 120.00256 * 179.97438 * 18 17 7 21 21 C 1.35786 * 119.99785 * 187.26515 * 20 18 17 22 22 C 1.41498 * 119.99819 * 10.54145 * 21 20 18 23 23 C 1.37096 * 125.47650 * 224.30133 * 22 21 20 24 24 C 1.37394 * 113.22190 * 179.80656 * 23 22 21 25 25 C 1.33893 * 115.13146 * 0.49421 * 24 23 22 26 26 S 1.70611 * 111.01514 * 359.72337 * 25 24 23 27 27 H 1.08995 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46643 * 299.99637 * 1 2 3 29 29 H 1.09000 * 109.46898 * 59.99813 * 1 2 3 30 30 H 1.09003 * 109.47001 * 240.00160 * 2 1 3 31 31 H 1.08994 * 109.47290 * 120.00398 * 2 1 3 32 32 H 1.09006 * 109.47545 * 60.00058 * 6 4 3 33 33 H 1.09000 * 109.47586 * 299.99688 * 6 4 3 34 34 H 0.97003 * 120.00093 * 179.97438 * 12 11 9 35 35 H 1.08001 * 119.99822 * 7.27107 * 20 18 17 36 36 H 1.07998 * 119.99228 * 190.26446 * 21 20 18 37 37 H 1.08001 * 123.38471 * 359.97438 * 23 22 21 38 38 H 1.08000 * 122.43907 * 180.19929 * 24 23 22 39 39 H 1.07994 * 124.49207 * 179.72924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8575 -0.0001 8 1 5.7805 2.2502 -0.8422 9 6 6.0244 4.2447 -0.1235 10 1 6.6591 4.4935 -0.9611 11 6 5.7408 5.1963 0.8332 12 7 4.9683 4.8932 1.8534 13 14 6.4538 6.9160 0.6800 14 1 7.2834 7.0003 -0.5488 15 1 5.3487 7.9047 0.5994 16 1 7.2957 7.2103 1.8672 17 8 5.8946 2.2634 1.2206 18 6 7.0459 1.5596 1.1750 19 8 7.6538 1.4546 0.1257 20 6 7.5452 0.9462 2.3449 21 6 8.7724 0.3650 2.3358 22 6 9.6409 0.5632 1.2365 23 6 10.3797 -0.4134 0.6200 24 6 11.1352 0.0581 -0.4263 25 6 11.0310 1.3731 -0.6557 26 16 9.9520 2.1028 0.4463 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.5852 3.4691 0.8905 33 1 3.5844 3.4701 -0.8895 34 1 4.7691 5.5626 2.5266 35 1 6.9510 0.9393 3.2467 36 1 9.0871 -0.2448 3.1697 37 1 10.3669 -1.4495 0.9244 38 1 11.7708 -0.5843 -1.0176 39 1 11.5596 1.9018 -1.4350 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870616638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:37 Heat of formation + Delta-G solvation = -127.547686 kcal Electronic energy + Delta-G solvation = -25398.966168 eV Core-core repulsion = 21592.116055 eV Total energy + Delta-G solvation = -3806.850113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55882 -40.93574 -38.83665 -37.87829 -37.16828 -34.97360 -34.68257 -32.89630 -31.98149 -29.83705 -28.16490 -26.21781 -24.79452 -24.00031 -23.06069 -21.54987 -20.94758 -20.43534 -19.13383 -18.77080 -18.20188 -17.67637 -17.42202 -17.23996 -16.64328 -16.55877 -16.19698 -15.60154 -15.31926 -15.07442 -14.51973 -14.30213 -13.93511 -13.86572 -13.69655 -13.52954 -13.42435 -13.18539 -13.02138 -12.94083 -12.83648 -12.72112 -12.59155 -12.46360 -12.07784 -11.61723 -11.52630 -11.47078 -11.35165 -11.16519 -10.73290 -10.62223 -10.61240 -9.25169 -8.70599 -8.19206 -6.43704 -0.62731 0.70001 1.05815 1.29288 1.32099 1.39538 1.43612 1.54352 1.82045 1.90190 2.38005 2.49998 2.58695 3.17254 3.94404 4.00163 4.00621 4.12991 4.24325 4.26060 4.34657 4.50838 4.54587 4.60486 4.64263 4.71201 4.87097 4.92839 4.93022 5.01467 5.13779 5.22665 5.33619 5.39282 5.48484 5.51516 5.68269 5.71917 6.00892 6.23181 6.63775 6.86667 7.28760 7.44410 8.83253 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.005151 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.166660 B = 5434.530343 C = 7529.873399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.097 4.097 7 C 0.233 3.767 8 H 0.014 0.986 9 C -0.566 4.566 10 H 0.052 0.948 11 C 0.050 3.950 12 N -0.878 5.878 13 Si 0.950 3.050 14 H -0.274 1.274 15 H -0.266 1.266 16 H -0.278 1.278 17 O -0.339 6.339 18 C 0.467 3.533 19 O -0.534 6.534 20 C -0.221 4.221 21 C 0.035 3.965 22 C -0.223 4.223 23 C -0.105 4.105 24 C -0.159 4.159 25 C -0.270 4.270 26 S 0.214 5.786 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.271 0.729 35 H 0.154 0.846 36 H 0.193 0.807 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -8.773 1.254 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.134 4.134 7 C 0.179 3.821 8 H 0.032 0.968 9 C -0.603 4.603 10 H 0.070 0.930 11 C -0.155 4.155 12 N -0.514 5.514 13 Si 0.775 3.225 14 H -0.198 1.198 15 H -0.191 1.191 16 H -0.204 1.204 17 O -0.254 6.254 18 C 0.316 3.684 19 O -0.429 6.429 20 C -0.243 4.243 21 C 0.016 3.984 22 C -0.341 4.341 23 C -0.136 4.136 24 C -0.191 4.191 25 C -0.408 4.408 26 S 0.487 5.513 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.172 0.828 36 H 0.210 0.790 37 H 0.186 0.814 38 H 0.178 0.822 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.599 -7.488 1.276 7.763 hybrid contribution 0.745 -0.553 -0.640 1.127 sum 2.343 -8.042 0.637 8.400 Atomic orbital electron populations 1.21806 0.89782 1.04466 1.03740 1.23293 0.97534 0.79680 1.02053 1.86548 1.24084 1.33571 1.83995 1.24553 0.80388 0.93448 0.70608 1.90579 1.61150 1.44262 1.47232 1.21695 0.95561 0.89046 1.07107 1.19437 0.89362 0.91618 0.81653 0.96817 1.21449 1.32904 0.95570 1.10410 0.92987 1.25633 0.94034 1.01891 0.93990 1.69955 1.34918 1.35391 1.11157 0.85635 0.78833 0.79899 0.78138 1.19814 1.19083 1.20394 1.86280 1.38117 1.60343 1.40660 1.20499 0.80537 0.76790 0.90591 1.90871 1.56994 1.60609 1.34468 1.21796 0.99311 1.05202 0.97957 1.21197 0.89439 0.92010 0.95759 1.22810 1.07318 0.98506 1.05456 1.21046 0.95770 1.00228 0.96574 1.20143 1.03731 0.94822 1.00383 1.25591 1.06547 1.00860 1.07753 1.83667 1.32469 1.09871 1.25324 0.87771 0.91340 0.91128 0.91748 0.92003 0.85471 0.86744 0.91974 0.82832 0.79032 0.81428 0.82213 0.80856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.39 6.19 71.98 0.45 1.84 16 3 O -0.36 -13.65 10.22 -51.41 -0.53 -14.17 16 4 C 0.46 20.73 7.84 71.23 0.56 21.29 16 5 O -0.54 -26.80 15.17 27.04 0.41 -26.39 16 6 C -0.10 -4.58 5.22 29.84 0.16 -4.42 16 7 C 0.23 12.54 1.62 29.85 0.05 12.59 16 8 H 0.01 0.80 6.93 -2.39 -0.02 0.78 16 9 C -0.57 -31.37 8.90 25.60 0.23 -31.14 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.05 2.60 5.24 84.66 0.44 3.05 16 12 N -0.88 -46.75 10.93 21.45 0.23 -46.51 16 13 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 O -0.34 -18.20 8.37 -54.19 -0.45 -18.66 16 18 C 0.47 22.88 7.15 68.55 0.49 23.37 16 19 O -0.53 -27.47 10.89 19.10 0.21 -27.26 16 20 C -0.22 -8.37 9.95 22.43 0.22 -8.15 16 21 C 0.04 1.07 9.89 22.50 0.22 1.29 16 22 C -0.22 -7.49 4.60 22.80 0.10 -7.38 16 23 C -0.10 -2.97 10.25 21.80 0.22 -2.75 16 24 C -0.16 -4.40 10.14 21.08 0.21 -4.19 16 25 C -0.27 -8.37 10.92 66.83 0.73 -7.64 16 26 S 0.21 8.08 19.38 -56.49 -1.10 6.98 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.13 6.39 6.22 -2.38 -0.01 6.38 16 33 H 0.11 4.96 8.14 -2.39 -0.02 4.94 16 34 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 35 H 0.15 5.13 8.06 -2.91 -0.02 5.10 16 36 H 0.19 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.17 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -70.78 352.42 6.70 -64.08 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.06 Total: 22.50 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.83 Total: -4.29 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.23 Total: -46.51 kcal Atomic # 8 Polarization: -86.12 SS G_CDS: -0.36 Total: -86.48 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 8.08 SS G_CDS: -1.10 Total: 6.98 kcal Total: -70.78 6.70 -64.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.467 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds