Wall clock time and date at job start Tue Mar 31 2020 13:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45204 * 109.47172 * 2 1 4 4 C 1.34230 * 116.99901 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99858 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47192 * 180.02562 * 6 4 3 8 8 H 1.08993 * 109.47241 * 54.99617 * 7 6 4 9 9 C 1.50697 * 109.47234 * 175.00210 * 7 6 4 10 10 H 1.07997 * 120.00152 * 239.99712 * 9 7 6 11 11 C 1.37883 * 120.00278 * 59.99694 * 9 7 6 12 12 N 1.31512 * 119.99666 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 120.00041 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47169 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46822 * 120.00138 * 13 11 9 16 16 H 1.48497 * 109.46840 * 239.99936 * 13 11 9 17 17 O 1.42903 * 109.47218 * 294.99864 * 7 6 4 18 18 C 1.35004 * 117.00157 * 149.99719 * 17 7 6 19 19 O 1.21713 * 120.00057 * 0.02562 * 18 17 7 20 20 C 1.41204 * 119.99948 * 180.02562 * 18 17 7 21 21 C 1.35792 * 120.00129 * 180.02562 * 20 18 17 22 22 C 1.41492 * 120.00136 * 180.02562 * 21 20 18 23 23 C 1.37098 * 125.47727 * 179.97438 * 22 21 20 24 24 C 1.37396 * 113.21804 * 180.24856 * 23 22 21 25 25 C 1.33894 * 115.13509 * 359.49729 * 24 23 22 26 26 S 1.70607 * 111.01377 * 0.49001 * 25 24 23 27 27 H 1.08999 * 109.46636 * 60.00147 * 1 2 3 28 28 H 1.08997 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47198 * 300.00716 * 1 2 3 30 30 H 1.08998 * 109.47221 * 240.00045 * 2 1 3 31 31 H 1.08999 * 109.46931 * 119.99391 * 2 1 3 32 32 H 1.09008 * 109.47209 * 60.00000 * 6 4 3 33 33 H 1.09001 * 109.47453 * 300.00137 * 6 4 3 34 34 H 0.97003 * 120.00158 * 179.97438 * 12 11 9 35 35 H 1.08000 * 120.00385 * 0.02562 * 20 18 17 36 36 H 1.08000 * 119.99486 * 0.02562 * 21 20 18 37 37 H 1.08002 * 123.38717 * 359.97438 * 23 22 21 38 38 H 1.08000 * 122.43508 * 179.71123 * 24 23 22 39 39 H 1.07998 * 124.49357 * 180.21477 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7807 2.2493 -0.8413 9 6 6.0244 4.2444 -0.1242 10 1 6.6592 4.4925 -0.9619 11 6 5.7406 5.1969 0.8315 12 7 4.9671 4.8950 1.8514 13 14 6.4538 6.9166 0.6770 14 1 7.2835 6.9998 -0.5517 15 1 5.3487 7.9052 0.5954 16 1 7.2954 7.2119 1.8642 17 8 5.8945 2.2644 1.2215 18 6 7.0457 1.5605 1.1767 19 8 7.6538 1.4545 0.1277 20 6 7.5443 0.9473 2.3468 21 6 8.7024 0.2398 2.3019 22 6 9.2018 -0.3751 3.4744 23 6 10.3544 -1.1128 3.5568 24 6 10.5975 -1.5984 4.8189 25 6 9.6869 -1.2646 5.7419 26 16 8.4441 -0.3154 5.0600 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.5844 3.4701 0.8896 33 1 3.5853 3.4691 -0.8904 34 1 4.7678 5.5649 2.5240 35 1 7.0045 1.0410 3.2776 36 1 9.2424 0.1465 1.3713 37 1 11.0033 -1.2976 2.7135 38 1 11.4623 -2.2025 5.0504 39 1 9.7307 -1.5610 6.7795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870616639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:41 Heat of formation + Delta-G solvation = -129.326651 kcal Electronic energy + Delta-G solvation = -24552.890372 eV Core-core repulsion = 20745.963117 eV Total energy + Delta-G solvation = -3806.927255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84574 -39.14659 -37.99545 -36.29510 -35.44897 -33.68230 -33.02211 -31.57602 -30.30248 -28.89510 -26.29410 -25.19778 -23.36156 -22.71024 -21.51216 -19.87985 -19.73925 -19.19307 -17.35241 -17.10013 -16.66478 -16.30817 -16.08956 -15.59634 -15.36937 -14.99222 -14.62481 -14.31864 -13.86258 -13.39720 -13.25460 -13.09244 -12.74090 -12.72010 -12.65131 -12.29116 -11.98382 -11.83187 -11.71917 -11.44213 -11.26749 -11.03641 -10.92180 -10.74633 -10.71302 -10.36161 -10.17390 -10.12619 -9.68560 -9.41544 -9.39096 -8.73198 -8.68064 -8.62427 -7.95416 -6.21743 -4.38835 0.26625 1.53922 1.92257 1.97237 2.84235 3.03136 3.19404 3.29330 3.33350 3.36207 4.08175 4.15978 4.29586 4.93438 5.03499 5.09879 5.15446 5.18651 5.32912 5.40012 5.45132 5.45418 5.49539 5.82192 5.90786 5.92331 6.02359 6.09761 6.16797 6.23642 6.37038 6.50297 6.55489 6.66528 6.99796 7.05379 7.31635 7.70650 7.97526 8.02375 8.52945 8.68414 9.14294 9.38418 10.80817 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.004122 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.863051 B = 6790.993411 C = 9076.709065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.517 6.517 6 C -0.102 4.102 7 C 0.227 3.773 8 H 0.044 0.956 9 C -0.547 4.547 10 H 0.070 0.930 11 C 0.081 3.919 12 N -0.862 5.862 13 Si 0.897 3.103 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.281 1.281 17 O -0.320 6.320 18 C 0.497 3.503 19 O -0.531 6.531 20 C -0.164 4.164 21 C -0.011 4.011 22 C -0.179 4.179 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.258 4.258 26 S 0.201 5.799 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.103 0.897 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -10.479 5.917 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.405 6.405 6 C -0.140 4.140 7 C 0.174 3.826 8 H 0.063 0.937 9 C -0.584 4.584 10 H 0.088 0.912 11 C -0.125 4.125 12 N -0.498 5.498 13 Si 0.724 3.276 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.207 1.207 17 O -0.234 6.234 18 C 0.344 3.656 19 O -0.425 6.425 20 C -0.186 4.186 21 C -0.031 4.031 22 C -0.297 4.297 23 C -0.145 4.145 24 C -0.173 4.173 25 C -0.395 4.395 26 S 0.470 5.530 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.601 -10.080 6.399 11.955 hybrid contribution 1.734 0.044 -0.423 1.785 sum 1.133 -10.036 5.975 11.735 Atomic orbital electron populations 1.21776 0.93301 1.02302 1.03329 1.22857 0.94846 0.81840 1.02036 1.86580 1.26135 1.30943 1.84737 1.24939 0.79461 0.94338 0.71092 1.90592 1.60242 1.43687 1.45935 1.21898 0.96770 0.88060 1.07237 1.19661 0.88081 0.92680 0.82188 0.93748 1.21452 1.32214 0.94445 1.10324 0.91219 1.25100 0.93869 0.99100 0.94474 1.69875 1.34610 1.34385 1.10964 0.86456 0.79186 0.83478 0.78514 1.19417 1.20533 1.20670 1.86311 1.36510 1.59434 1.41130 1.19320 0.81171 0.76862 0.88210 1.90756 1.58779 1.60063 1.32936 1.21597 0.97584 1.00730 0.98690 1.20660 0.94342 0.92201 0.95894 1.22689 1.01169 1.07914 0.97885 1.20916 0.96585 0.98510 0.98448 1.19945 1.01262 1.03655 0.92456 1.25271 1.01695 1.07748 1.04795 1.83355 1.23136 1.46847 0.99687 0.91706 0.90865 0.91597 0.91883 0.91755 0.84192 0.87896 0.92359 0.85467 0.83582 0.83521 0.84462 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.83 10.22 -39.26 -0.40 -7.23 16 4 C 0.46 9.94 7.84 36.01 0.28 10.22 16 5 O -0.52 -12.37 15.17 -24.05 -0.36 -12.73 16 6 C -0.10 -2.35 5.22 -27.89 -0.15 -2.49 16 7 C 0.23 5.93 1.62 -27.89 -0.05 5.89 16 8 H 0.04 1.21 6.93 -51.93 -0.36 0.86 16 9 C -0.55 -14.89 8.90 -34.44 -0.31 -15.20 16 10 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 11 C 0.08 2.13 5.24 -17.82 -0.09 2.03 16 12 N -0.86 -22.85 10.93 55.43 0.61 -22.24 16 13 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 O -0.32 -8.41 8.38 -46.67 -0.39 -8.80 16 18 C 0.50 12.17 7.63 31.86 0.24 12.41 16 19 O -0.53 -13.92 15.34 -19.43 -0.30 -14.22 16 20 C -0.16 -3.23 9.44 -39.33 -0.37 -3.60 16 21 C -0.01 -0.18 9.36 -39.22 -0.37 -0.55 16 22 C -0.18 -2.52 6.21 -38.76 -0.24 -2.76 16 23 C -0.11 -1.35 10.25 -40.30 -0.41 -1.76 16 24 C -0.14 -1.48 10.14 -41.41 -0.42 -1.90 16 25 C -0.26 -2.68 10.92 29.21 0.32 -2.36 16 26 S 0.20 2.49 21.76 -107.50 -2.34 0.16 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.14 3.41 6.22 -51.92 -0.32 3.09 16 33 H 0.10 2.15 8.14 -51.93 -0.42 1.73 16 34 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 35 H 0.13 2.32 7.04 -52.49 -0.37 1.95 16 36 H 0.15 2.40 7.45 -52.49 -0.39 2.01 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -31.74 358.69 -8.54 -40.28 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.79 Total: 4.25 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.95 Total: -0.23 kcal Atomic # 7 Polarization: -22.85 SS G_CDS: 0.61 Total: -22.24 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.46 Total: -42.98 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.34 Total: 0.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -8.54 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.045 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds