Wall clock time and date at job start Tue Mar 31 2020 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.46846 * 2 1 4 4 C 1.34231 * 117.00100 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99649 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00117 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46954 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47208 * 55.00218 * 7 6 4 9 9 C 1.50709 * 109.47141 * 174.99973 * 7 6 4 10 10 H 1.07990 * 120.00003 * 240.00170 * 9 7 6 11 11 C 1.37885 * 119.99544 * 60.00169 * 9 7 6 12 12 N 1.31509 * 119.99918 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99444 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47566 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46912 * 119.99991 * 13 11 9 16 16 H 1.48493 * 109.46977 * 239.99636 * 13 11 9 17 17 O 1.42903 * 109.47388 * 294.99980 * 7 6 4 18 18 C 1.34974 * 117.00081 * 149.99845 * 17 7 6 19 19 O 1.21687 * 119.99627 * 0.02562 * 18 17 7 20 20 C 1.41395 * 119.99851 * 180.02562 * 18 17 7 21 21 C 1.35373 * 120.00124 * 180.02562 * 20 18 17 22 22 C 1.46636 * 120.00169 * 179.97438 * 21 20 18 23 23 C 1.44545 * 123.50329 * 180.02562 * 22 21 20 24 24 C 1.32728 * 113.08902 * 179.97438 * 23 22 21 25 25 S 1.75486 * 110.65422 * 359.97438 * 24 23 22 26 26 C 1.36336 * 123.50554 * 359.70557 * 22 21 20 27 27 H 1.08995 * 109.47167 * 60.00653 * 1 2 3 28 28 H 1.09006 * 109.46956 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47521 * 300.00070 * 1 2 3 30 30 H 1.08997 * 109.47521 * 239.99930 * 2 1 3 31 31 H 1.09005 * 109.47183 * 119.99333 * 2 1 3 32 32 H 1.09004 * 109.47350 * 60.00177 * 6 4 3 33 33 H 1.09003 * 109.47601 * 299.99834 * 6 4 3 34 34 H 0.97004 * 119.99730 * 180.02562 * 12 11 9 35 35 H 1.08004 * 120.00524 * 0.02562 * 20 18 17 36 36 H 1.07995 * 119.99785 * 0.27943 * 21 20 18 37 37 H 1.07997 * 123.45557 * 359.93899 * 23 22 21 38 38 H 1.08009 * 124.67218 * 179.97438 * 24 23 22 39 39 H 1.07999 * 124.60935 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4485 2.8575 -0.0010 8 1 5.7806 2.2495 -0.8425 9 6 6.0243 4.2447 -0.1255 10 1 6.6590 4.4927 -0.9632 11 6 5.7405 5.1971 0.8303 12 7 4.9671 4.8951 1.8502 13 14 6.4535 6.9167 0.6756 14 1 7.2842 6.9996 -0.5525 15 1 5.3484 7.9053 0.5941 16 1 7.2953 7.2121 1.8628 17 8 5.8944 2.2645 1.2203 18 6 7.0454 1.5609 1.1755 19 8 7.6532 1.4550 0.1266 20 6 7.5447 0.9469 2.3472 21 6 8.6993 0.2416 2.3024 22 6 9.2175 -0.3947 3.5177 23 6 10.4408 -1.1635 3.5563 24 6 10.7150 -1.6454 4.7622 25 16 9.4770 -1.1741 5.9132 26 6 8.5987 -0.3173 4.7301 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5850 3.4699 0.8888 33 1 3.5843 3.4695 -0.8912 34 1 4.7672 5.5653 2.5224 35 1 7.0050 1.0405 3.2780 36 1 9.2414 0.1517 1.3727 37 1 11.0672 -1.3294 2.6923 38 1 11.5807 -2.2450 5.0021 39 1 7.6764 0.2132 4.9153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870619848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:43 Heat of formation + Delta-G solvation = -130.519894 kcal Electronic energy + Delta-G solvation = -24543.627766 eV Core-core repulsion = 20736.648769 eV Total energy + Delta-G solvation = -3806.978998 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84439 -39.14539 -37.82874 -36.23890 -35.35962 -33.02597 -32.78196 -31.57850 -30.26426 -28.98141 -26.34368 -25.49922 -23.34462 -22.60588 -21.46864 -19.90402 -19.49185 -18.35553 -18.10139 -17.21668 -16.77539 -16.20637 -16.01667 -15.52766 -15.17609 -15.04541 -14.58139 -14.29271 -13.84143 -13.42922 -13.24399 -13.08036 -12.73977 -12.67504 -12.55115 -12.31850 -12.05644 -11.81893 -11.57233 -11.36206 -11.26838 -11.03924 -10.92124 -10.85830 -10.73712 -10.27216 -10.12944 -9.97175 -9.68505 -9.39759 -9.37530 -8.97417 -8.73077 -8.67013 -7.87435 -6.21829 -4.38776 0.65605 1.54991 1.56011 1.93482 2.92840 3.02999 3.19202 3.29094 3.33130 3.36085 4.12434 4.16677 4.29732 4.74743 5.06546 5.09510 5.14322 5.17106 5.21169 5.39509 5.43305 5.49241 5.62935 5.76541 5.90419 5.92023 5.95232 6.04538 6.10439 6.29539 6.37137 6.54679 6.67445 6.72121 7.00397 7.07149 7.31878 7.70742 7.98163 8.03937 8.52845 8.68736 9.16375 9.38674 10.80731 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.003843 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.148532 B = 7284.698444 C = 9573.670231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.517 6.517 6 C -0.102 4.102 7 C 0.228 3.772 8 H 0.044 0.956 9 C -0.547 4.547 10 H 0.070 0.930 11 C 0.081 3.919 12 N -0.863 5.863 13 Si 0.897 3.103 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.281 1.281 17 O -0.320 6.320 18 C 0.496 3.504 19 O -0.533 6.533 20 C -0.164 4.164 21 C -0.018 4.018 22 C -0.088 4.088 23 C -0.110 4.110 24 C -0.235 4.235 25 S 0.156 5.844 26 C -0.230 4.230 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -10.902 6.206 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.174 3.826 8 H 0.062 0.938 9 C -0.584 4.584 10 H 0.088 0.912 11 C -0.125 4.125 12 N -0.499 5.499 13 Si 0.724 3.276 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.207 1.207 17 O -0.235 6.235 18 C 0.343 3.657 19 O -0.427 6.427 20 C -0.185 4.185 21 C -0.039 4.039 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.370 4.370 25 S 0.421 5.579 26 C -0.367 4.367 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.076 -11.429 7.623 13.780 hybrid contribution 0.485 1.116 -1.558 1.977 sum 1.561 -10.314 6.065 12.066 Atomic orbital electron populations 1.21775 0.93298 1.02305 1.03327 1.22855 0.94846 0.81845 1.02029 1.86580 1.26148 1.30938 1.84742 1.24944 0.79453 0.94343 0.71096 1.90594 1.60239 1.43684 1.45928 1.21899 0.96802 0.88044 1.07226 1.19652 0.88049 0.92667 0.82230 0.93784 1.21458 1.32182 0.94470 1.10296 0.91229 1.25098 0.93876 0.99100 0.94471 1.69877 1.34661 1.34350 1.10999 0.86455 0.79183 0.83481 0.78513 1.19409 1.20528 1.20691 1.86299 1.36611 1.59492 1.41069 1.19464 0.81080 0.76784 0.88342 1.90746 1.58814 1.60114 1.33046 1.21494 0.97836 1.00580 0.98543 1.21908 0.94061 0.92011 0.95898 1.19408 0.95811 1.01666 0.93323 1.21352 0.96358 0.98153 0.98127 1.25423 1.04980 1.09365 0.97217 1.82925 1.15469 1.47153 1.12309 1.25701 1.06239 1.07316 0.97419 0.91699 0.90863 0.91605 0.91879 0.91775 0.84208 0.87908 0.92393 0.85369 0.84438 0.83342 0.81804 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.86 10.22 -39.26 -0.40 -7.26 16 4 C 0.46 9.97 7.84 36.00 0.28 10.25 16 5 O -0.52 -12.42 15.17 -24.05 -0.36 -12.78 16 6 C -0.10 -2.36 5.22 -27.88 -0.15 -2.50 16 7 C 0.23 5.96 1.62 -27.88 -0.05 5.91 16 8 H 0.04 1.21 6.93 -51.93 -0.36 0.85 16 9 C -0.55 -14.95 8.90 -34.43 -0.31 -15.25 16 10 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 11 C 0.08 2.13 5.24 -17.82 -0.09 2.04 16 12 N -0.86 -22.92 10.93 55.43 0.61 -22.32 16 13 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 O -0.32 -8.44 8.38 -46.58 -0.39 -8.83 16 18 C 0.50 12.18 7.64 31.93 0.24 12.43 16 19 O -0.53 -14.08 15.34 -19.41 -0.30 -14.37 16 20 C -0.16 -3.21 9.39 -39.40 -0.37 -3.58 16 21 C -0.02 -0.30 9.57 -37.22 -0.36 -0.66 16 22 C -0.09 -1.24 5.97 -104.71 -0.62 -1.86 16 23 C -0.11 -1.27 10.38 -38.98 -0.40 -1.67 16 24 C -0.24 -2.30 11.11 28.85 0.32 -1.98 16 25 S 0.16 1.56 23.02 -107.50 -2.47 -0.91 16 26 C -0.23 -2.94 10.26 30.05 0.31 -2.63 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.14 3.42 6.22 -51.93 -0.32 3.10 16 33 H 0.10 2.16 8.14 -51.93 -0.42 1.73 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.13 2.27 6.53 -52.48 -0.34 1.93 16 36 H 0.14 2.30 7.45 -52.49 -0.39 1.90 16 37 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.17 2.08 6.81 -52.49 -0.36 1.72 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -32.08 358.53 -8.22 -40.30 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.70 Total: 5.01 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.58 Total: 0.33 kcal Atomic # 7 Polarization: -22.92 SS G_CDS: 0.61 Total: -22.32 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.45 Total: -43.25 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.08 -8.22 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.220 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds