Wall clock time and date at job start Tue Mar 31 2020 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.46846 * 2 1 4 4 C 1.34231 * 117.00100 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99649 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00117 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46954 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47208 * 55.00218 * 7 6 4 9 9 C 1.50709 * 109.47141 * 174.99973 * 7 6 4 10 10 H 1.07990 * 120.00003 * 240.00170 * 9 7 6 11 11 C 1.37885 * 119.99544 * 60.00169 * 9 7 6 12 12 N 1.31509 * 119.99918 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99444 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47566 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46912 * 119.99991 * 13 11 9 16 16 H 1.48493 * 109.46977 * 239.99636 * 13 11 9 17 17 O 1.42903 * 109.47388 * 294.99980 * 7 6 4 18 18 C 1.34974 * 117.00081 * 149.99845 * 17 7 6 19 19 O 1.21687 * 119.99627 * 0.02562 * 18 17 7 20 20 C 1.41395 * 119.99851 * 180.02562 * 18 17 7 21 21 C 1.35373 * 120.00124 * 180.02562 * 20 18 17 22 22 C 1.46636 * 120.00169 * 179.97438 * 21 20 18 23 23 C 1.44545 * 123.50329 * 180.02562 * 22 21 20 24 24 C 1.32728 * 113.08902 * 179.97438 * 23 22 21 25 25 S 1.75486 * 110.65422 * 359.97438 * 24 23 22 26 26 C 1.36336 * 123.50554 * 359.70557 * 22 21 20 27 27 H 1.08995 * 109.47167 * 60.00653 * 1 2 3 28 28 H 1.09006 * 109.46956 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47521 * 300.00070 * 1 2 3 30 30 H 1.08997 * 109.47521 * 239.99930 * 2 1 3 31 31 H 1.09005 * 109.47183 * 119.99333 * 2 1 3 32 32 H 1.09004 * 109.47350 * 60.00177 * 6 4 3 33 33 H 1.09003 * 109.47601 * 299.99834 * 6 4 3 34 34 H 0.97004 * 119.99730 * 180.02562 * 12 11 9 35 35 H 1.08004 * 120.00524 * 0.02562 * 20 18 17 36 36 H 1.07995 * 119.99785 * 0.27943 * 21 20 18 37 37 H 1.07997 * 123.45557 * 359.93899 * 23 22 21 38 38 H 1.08009 * 124.67218 * 179.97438 * 24 23 22 39 39 H 1.07999 * 124.60935 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4485 2.8575 -0.0010 8 1 5.7806 2.2495 -0.8425 9 6 6.0243 4.2447 -0.1255 10 1 6.6590 4.4927 -0.9632 11 6 5.7405 5.1971 0.8303 12 7 4.9671 4.8951 1.8502 13 14 6.4535 6.9167 0.6756 14 1 7.2842 6.9996 -0.5525 15 1 5.3484 7.9053 0.5941 16 1 7.2953 7.2121 1.8628 17 8 5.8944 2.2645 1.2203 18 6 7.0454 1.5609 1.1755 19 8 7.6532 1.4550 0.1266 20 6 7.5447 0.9469 2.3472 21 6 8.6993 0.2416 2.3024 22 6 9.2175 -0.3947 3.5177 23 6 10.4408 -1.1635 3.5563 24 6 10.7150 -1.6454 4.7622 25 16 9.4770 -1.1741 5.9132 26 6 8.5987 -0.3173 4.7301 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5850 3.4699 0.8888 33 1 3.5843 3.4695 -0.8912 34 1 4.7672 5.5653 2.5224 35 1 7.0050 1.0405 3.2780 36 1 9.2414 0.1517 1.3727 37 1 11.0672 -1.3294 2.6923 38 1 11.5807 -2.2450 5.0021 39 1 7.6764 0.2132 4.9153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870619848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:43 Heat of formation + Delta-G solvation = -147.284323 kcal Electronic energy + Delta-G solvation = -24544.354726 eV Core-core repulsion = 20736.648769 eV Total energy + Delta-G solvation = -3807.705958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59291 -40.94318 -38.92944 -37.92046 -37.18886 -35.03654 -34.15154 -32.91130 -31.99259 -30.06985 -28.23980 -26.90462 -24.83652 -23.83900 -22.99858 -21.58797 -20.96846 -19.65489 -19.37320 -18.99205 -18.42370 -17.89499 -17.53771 -17.28403 -16.86383 -16.47260 -16.19340 -16.14544 -15.25976 -14.65836 -14.47804 -14.39293 -14.17907 -13.97295 -13.75061 -13.55770 -13.41166 -13.33640 -12.98897 -12.90133 -12.81985 -12.80922 -12.61830 -12.47297 -12.12061 -11.77756 -11.56255 -11.49501 -11.41175 -11.29452 -11.26429 -10.74677 -10.68411 -9.86979 -8.94632 -8.23271 -6.49427 -0.57234 0.47442 0.68473 1.03185 1.26928 1.39290 1.42741 1.54615 1.72718 1.79715 2.36611 2.41278 2.47422 3.10705 3.80026 3.88751 3.93574 3.99808 4.06890 4.12690 4.33811 4.38157 4.39583 4.48722 4.57753 4.59920 4.74482 4.84694 4.92101 4.93231 5.06491 5.12856 5.28752 5.32728 5.40334 5.46596 5.49071 5.64199 5.94903 6.10582 6.57754 6.84236 7.20015 7.34314 8.79371 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.003843 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.148532 B = 7284.698444 C = 9573.670231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.544 6.544 6 C -0.095 4.095 7 C 0.227 3.773 8 H 0.015 0.985 9 C -0.577 4.577 10 H 0.053 0.947 11 C 0.048 3.952 12 N -0.878 5.878 13 Si 0.959 3.041 14 H -0.275 1.275 15 H -0.262 1.262 16 H -0.279 1.279 17 O -0.335 6.335 18 C 0.488 3.512 19 O -0.570 6.570 20 C -0.215 4.215 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.227 4.227 25 S 0.216 5.784 26 C -0.237 4.237 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.272 0.728 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.164 0.836 38 H 0.199 0.801 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -11.794 8.245 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.280 6.280 4 C 0.311 3.689 5 O -0.434 6.434 6 C -0.132 4.132 7 C 0.174 3.826 8 H 0.034 0.966 9 C -0.614 4.614 10 H 0.071 0.929 11 C -0.158 4.158 12 N -0.513 5.513 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.187 1.187 16 H -0.204 1.204 17 O -0.250 6.250 18 C 0.339 3.661 19 O -0.467 6.467 20 C -0.236 4.236 21 C 0.011 3.989 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.362 4.362 25 S 0.483 5.517 26 C -0.374 4.374 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.182 0.818 38 H 0.216 0.784 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.346 -12.335 9.684 15.740 hybrid contribution 0.466 1.185 -2.026 2.393 sum 1.812 -11.150 7.658 13.647 Atomic orbital electron populations 1.21806 0.89713 1.04480 1.03773 1.23307 0.97580 0.79655 1.02080 1.86546 1.23927 1.33588 1.83954 1.24530 0.80447 0.93382 0.70586 1.90581 1.61207 1.44303 1.47307 1.21675 0.95012 0.89166 1.07371 1.19565 0.89839 0.91747 0.81494 0.96647 1.21525 1.33363 0.95684 1.10829 0.92878 1.25711 0.93938 1.02299 0.93812 1.69954 1.34650 1.35568 1.11138 0.85502 0.78795 0.79284 0.78062 1.19924 1.18663 1.20440 1.86282 1.37641 1.60146 1.40939 1.20272 0.80212 0.76154 0.89500 1.90698 1.59588 1.61829 1.34583 1.21298 1.00341 1.04643 0.97296 1.22102 0.91704 0.88117 0.97013 1.19445 0.97901 1.04041 0.92523 1.21472 0.95704 0.98372 0.99671 1.25873 1.05582 1.08370 0.96353 1.82807 1.13936 1.44596 1.10395 1.26021 1.06378 1.06698 0.98292 0.91060 0.87766 0.91339 0.91666 0.92056 0.85324 0.86351 0.91792 0.84143 0.84896 0.81849 0.78428 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.36 -13.65 10.22 -51.43 -0.53 -14.17 16 4 C 0.47 20.98 7.84 71.24 0.56 21.54 16 5 O -0.54 -27.30 15.17 27.03 0.41 -26.89 16 6 C -0.09 -4.55 5.22 29.85 0.16 -4.40 16 7 C 0.23 12.62 1.62 29.85 0.05 12.66 16 8 H 0.02 0.92 6.93 -2.39 -0.02 0.90 16 9 C -0.58 -33.02 8.90 25.60 0.23 -32.79 16 10 H 0.05 3.11 7.81 -2.92 -0.02 3.09 16 11 C 0.05 2.56 5.24 84.66 0.44 3.00 16 12 N -0.88 -47.32 10.93 21.45 0.23 -47.09 16 13 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 O -0.34 -18.73 8.38 -53.81 -0.45 -19.18 16 18 C 0.49 25.55 7.64 68.60 0.52 26.07 16 19 O -0.57 -32.24 15.34 19.22 0.29 -31.94 16 20 C -0.21 -8.85 9.39 22.39 0.21 -8.64 16 21 C 0.03 1.08 9.57 23.80 0.23 1.31 16 22 C -0.12 -3.36 5.97 -19.92 -0.12 -3.48 16 23 C -0.12 -2.55 10.38 22.70 0.24 -2.32 16 24 C -0.23 -3.59 11.11 66.65 0.74 -2.85 16 25 S 0.22 3.62 23.02 -56.49 -1.30 2.32 16 26 C -0.24 -5.69 10.26 67.38 0.69 -5.00 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 31 H 0.06 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.13 6.52 6.22 -2.38 -0.01 6.50 16 33 H 0.12 5.16 8.14 -2.39 -0.02 5.14 16 34 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 35 H 0.14 5.25 6.53 -2.91 -0.02 5.23 16 36 H 0.13 4.61 7.45 -2.91 -0.02 4.59 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.17 4.03 6.81 -2.91 -0.02 4.01 16 Total: -1.00 -73.06 358.53 6.89 -66.17 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 1.07 Total: 21.51 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.13 Total: 4.88 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.23 Total: -47.09 kcal Atomic # 8 Polarization: -91.91 SS G_CDS: -0.27 Total: -92.18 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.30 Total: 2.32 kcal Total: -73.06 6.89 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.114 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds