Wall clock time and date at job start Tue Mar 31 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47354 * 2 1 4 4 C 1.34221 * 117.00026 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99968 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00175 * 180.27729 * 4 3 2 7 7 C 1.53001 * 109.47382 * 179.71942 * 6 4 3 8 8 H 1.09001 * 109.47227 * 54.99870 * 7 6 4 9 9 C 1.50698 * 109.47102 * 174.99403 * 7 6 4 10 10 H 1.07997 * 120.00229 * 239.99930 * 9 7 6 11 11 C 1.37881 * 119.99840 * 60.00241 * 9 7 6 12 12 N 1.31520 * 120.00035 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00105 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47073 * 89.99988 * 13 11 9 15 15 H 1.48501 * 109.47417 * 209.99737 * 13 11 9 16 16 H 1.48501 * 109.47419 * 330.00303 * 13 11 9 17 17 O 1.42892 * 109.47208 * 294.99560 * 7 6 4 18 18 C 1.34974 * 116.99942 * 149.99987 * 17 7 6 19 19 O 1.21688 * 119.99779 * 359.97438 * 18 17 7 20 20 C 1.41405 * 119.99849 * 180.02562 * 18 17 7 21 21 C 1.35378 * 119.99801 * 186.86249 * 20 18 17 22 22 C 1.46629 * 119.99849 * 11.58623 * 21 20 18 23 23 C 1.44543 * 123.50867 * 45.33978 * 22 21 20 24 24 C 1.32725 * 113.09646 * 179.97438 * 23 22 21 25 25 S 1.75490 * 110.65054 * 359.97438 * 24 23 22 26 26 C 1.36344 * 123.50514 * 225.04069 * 22 21 20 27 27 H 1.09003 * 109.47576 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47002 * 300.00189 * 1 2 3 29 29 H 1.08999 * 109.47526 * 60.00130 * 1 2 3 30 30 H 1.08998 * 109.47051 * 239.99410 * 2 1 3 31 31 H 1.09006 * 109.46906 * 120.00108 * 2 1 3 32 32 H 1.09010 * 109.46851 * 299.71884 * 6 4 3 33 33 H 1.09000 * 109.47179 * 59.71596 * 6 4 3 34 34 H 0.97000 * 119.99994 * 179.97438 * 12 11 9 35 35 H 1.07996 * 120.00062 * 6.86530 * 20 18 17 36 36 H 1.07997 * 119.99593 * 191.58203 * 21 20 18 37 37 H 1.07998 * 123.45136 * 359.93516 * 23 22 21 38 38 H 1.07994 * 124.67620 * 179.97438 * 24 23 22 39 39 H 1.08005 * 124.60425 * 359.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9372 0.0057 7 6 5.4487 2.8571 0.0108 8 1 5.7836 2.2520 -0.8317 9 6 6.0248 4.2446 -0.1069 10 1 6.6625 4.4955 -0.9416 11 6 5.7379 5.1938 0.8511 12 7 4.9610 4.8884 1.8674 13 14 6.4526 6.9135 0.7057 14 1 5.5211 7.7728 -0.0685 15 1 6.6432 7.4868 2.0622 16 1 7.7617 6.8481 0.0075 17 8 5.8903 2.2599 1.2315 18 6 7.0414 1.5564 1.1882 19 8 7.6524 1.4534 0.1409 20 6 7.5367 0.9383 2.3596 21 6 8.7568 0.3517 2.3512 22 6 9.6680 0.5713 1.2237 23 6 9.9171 1.8701 0.6402 24 6 10.7779 1.8309 -0.3693 25 16 11.3265 0.1880 -0.6515 26 6 10.3732 -0.4275 0.6203 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.5879 3.4722 -0.8839 33 1 3.5817 3.4667 0.8962 34 1 4.7594 5.5560 2.5416 35 1 6.9417 0.9341 3.2608 36 1 9.0588 -0.2778 3.1751 37 1 9.4500 2.7791 0.9894 38 1 11.0968 2.6914 -0.9386 39 1 10.3325 -1.4676 0.9085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870619849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:45 Heat of formation + Delta-G solvation = -133.014965 kcal Electronic energy + Delta-G solvation = -25408.434717 eV Core-core repulsion = 21601.347525 eV Total energy + Delta-G solvation = -3807.087192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58080 -40.99857 -38.85055 -37.69188 -36.92278 -34.97607 -33.92958 -32.89567 -31.95726 -30.33666 -28.21465 -26.25191 -24.68159 -23.87896 -23.10419 -21.61016 -21.29821 -19.70109 -19.05873 -18.74614 -18.28482 -17.89926 -17.58849 -17.25458 -16.76091 -16.52001 -16.17659 -15.36495 -15.29148 -14.97112 -14.47673 -14.27781 -13.98748 -13.86972 -13.69987 -13.62960 -13.41537 -13.18273 -13.01923 -12.93484 -12.84537 -12.78679 -12.61578 -12.46947 -12.11533 -11.71504 -11.53722 -11.48151 -11.36556 -11.05451 -10.73816 -10.67704 -10.62330 -9.69583 -8.73367 -8.21600 -6.46785 -0.22350 0.43077 0.85683 1.16610 1.27956 1.39196 1.41775 1.51321 1.80981 1.91396 2.35883 2.47219 2.57747 3.14806 3.88707 3.93324 3.99886 4.04151 4.12564 4.27235 4.34179 4.40337 4.49517 4.57031 4.62561 4.65034 4.85469 4.90390 4.92637 5.00910 5.13208 5.23097 5.29831 5.34040 5.39425 5.49708 5.62099 5.67636 5.98495 6.22511 6.60931 6.85437 7.26963 7.44265 8.80670 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009633 B = 0.004789 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.062511 B = 5844.984357 C = 7959.454005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.096 4.096 7 C 0.234 3.766 8 H 0.012 0.988 9 C -0.571 4.571 10 H 0.050 0.950 11 C 0.049 3.951 12 N -0.878 5.878 13 Si 0.954 3.046 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.279 1.279 17 O -0.340 6.340 18 C 0.474 3.526 19 O -0.538 6.538 20 C -0.214 4.214 21 C 0.024 3.976 22 C -0.105 4.105 23 C -0.082 4.082 24 C -0.255 4.255 25 S 0.178 5.822 26 C -0.233 4.233 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.271 0.729 35 H 0.154 0.846 36 H 0.189 0.811 37 H 0.107 0.893 38 H 0.167 0.833 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -9.491 1.095 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.134 4.134 7 C 0.180 3.820 8 H 0.031 0.969 9 C -0.608 4.608 10 H 0.068 0.932 11 C -0.156 4.156 12 N -0.513 5.513 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.205 1.205 17 O -0.255 6.255 18 C 0.323 3.677 19 O -0.432 6.432 20 C -0.234 4.234 21 C 0.004 3.996 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.389 4.389 25 S 0.442 5.558 26 C -0.369 4.369 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.206 0.794 37 H 0.125 0.875 38 H 0.184 0.816 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.301 -10.378 -0.108 10.891 hybrid contribution -0.902 1.678 0.772 2.056 sum 2.399 -8.700 0.663 9.049 Atomic orbital electron populations 1.21808 0.89769 1.04478 1.03744 1.23296 0.97543 0.79657 1.02072 1.86546 1.24034 1.33600 1.83974 1.24535 0.80410 0.93415 0.70603 1.90578 1.61164 1.44256 1.47252 1.21690 0.95499 0.89090 1.07094 1.19415 0.89455 0.91506 0.81653 0.96944 1.21422 1.32947 0.95778 1.10623 0.93170 1.25652 0.94038 1.01967 0.93926 1.69950 1.34649 1.35503 1.11210 0.85636 0.78924 0.79730 0.77855 1.18764 1.20111 1.20459 1.86283 1.38397 1.60236 1.40620 1.20504 0.80315 0.76410 0.90424 1.90773 1.57689 1.60472 1.34300 1.21702 0.99563 1.04548 0.97623 1.22558 0.89611 0.91742 0.95654 1.19458 1.00031 0.92504 1.00031 1.21050 0.96053 0.97194 0.96782 1.25428 1.07018 1.02162 1.04293 1.82345 1.43594 0.97974 1.31866 1.25685 1.03868 1.04149 1.03237 0.87752 0.91342 0.91124 0.91729 0.91982 0.86778 0.85445 0.91906 0.82881 0.79355 0.87465 0.81577 0.79124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.29 71.98 0.74 -2.03 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.36 -13.64 10.22 -51.33 -0.52 -14.16 16 4 C 0.46 20.79 7.84 71.24 0.56 21.35 16 5 O -0.54 -26.85 15.17 27.03 0.41 -26.44 16 6 C -0.10 -4.58 5.22 29.85 0.16 -4.43 16 7 C 0.23 12.66 1.62 29.85 0.05 12.71 16 8 H 0.01 0.73 6.93 -2.39 -0.02 0.71 16 9 C -0.57 -31.93 8.90 25.60 0.23 -31.70 16 10 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 11 C 0.05 2.61 5.24 84.65 0.44 3.05 16 12 N -0.88 -46.88 10.93 21.45 0.23 -46.65 16 13 Si 0.95 41.93 29.54 68.60 2.03 43.96 16 14 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 O -0.34 -18.37 8.37 -53.80 -0.45 -18.82 16 18 C 0.47 23.42 7.04 68.60 0.48 23.90 16 19 O -0.54 -28.21 11.41 19.22 0.22 -27.99 16 20 C -0.21 -8.11 9.93 22.39 0.22 -7.88 16 21 C 0.02 0.73 9.98 23.80 0.24 0.97 16 22 C -0.11 -3.54 4.40 -19.92 -0.09 -3.63 16 23 C -0.08 -3.13 7.31 22.70 0.17 -2.97 16 24 C -0.25 -8.48 11.11 66.65 0.74 -7.74 16 25 S 0.18 4.69 23.02 -56.49 -1.30 3.39 16 26 C -0.23 -6.45 10.83 67.38 0.73 -5.72 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.06 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.11 4.98 8.14 -2.38 -0.02 4.96 16 33 H 0.13 6.42 6.22 -2.39 -0.01 6.41 16 34 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 35 H 0.15 5.08 8.06 -2.91 -0.02 5.05 16 36 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.11 4.73 7.66 -2.91 -0.02 4.71 16 38 H 0.17 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.19 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -71.33 353.87 6.79 -64.54 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 1.06 Total: 24.47 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.11 Total: -2.30 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.23 Total: -46.65 kcal Atomic # 8 Polarization: -87.06 SS G_CDS: -0.35 Total: -87.41 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -71.33 6.79 -64.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.476 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds