Wall clock time and date at job start Tue Mar 31 2020 13:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38630 * 119.77234 * 2 1 4 4 C 1.37679 * 120.33778 * 179.97438 * 3 2 1 5 5 C 1.40021 * 119.88062 * 0.02562 * 4 3 2 6 6 C 1.46785 * 120.22101 * 179.97438 * 5 4 3 7 7 O 1.21301 * 119.99440 * 180.02562 * 6 5 4 8 8 C 1.40444 * 119.55480 * 359.97438 * 5 4 3 9 9 O 1.35596 * 120.17088 * 180.02562 * 8 5 4 10 10 S 1.52201 * 114.00037 * 89.99928 * 9 8 5 11 11 O 1.42095 * 104.27780 * 318.93259 * 10 9 8 12 12 O 1.42098 * 104.27528 * 191.07316 * 10 9 8 13 13 C 1.81404 * 104.44432 * 75.00221 * 10 9 8 14 14 C 1.53004 * 109.46719 * 174.76819 * 13 10 9 15 15 C 1.50696 * 115.55104 * 295.24894 * 14 13 10 16 16 H 1.08000 * 119.99842 * 95.23532 * 15 14 13 17 17 C 1.37877 * 119.99995 * 274.95060 * 15 14 13 18 18 N 1.31517 * 119.99767 * 6.42356 * 17 15 14 19 19 Si 1.86795 * 120.00005 * 186.41508 * 17 15 14 20 20 H 1.48501 * 109.47136 * 60.00672 * 19 17 15 21 21 H 1.48501 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47461 * 300.00269 * 19 17 15 23 23 C 1.53002 * 117.49547 * 80.92040 * 14 13 10 24 24 C 1.53002 * 117.49515 * 149.57634 * 14 13 10 25 25 C 1.38054 * 119.77431 * 180.25087 * 2 1 3 26 26 H 1.08999 * 109.46399 * 89.99928 * 1 2 3 27 27 H 1.08995 * 109.47002 * 210.00185 * 1 2 3 28 28 H 1.09002 * 109.46815 * 330.00409 * 1 2 3 29 29 H 1.07998 * 119.83019 * 359.95305 * 3 2 1 30 30 H 1.07993 * 120.05911 * 179.97438 * 4 3 2 31 31 H 1.07996 * 120.00461 * 0.02562 * 6 5 4 32 32 H 1.09004 * 109.47438 * 54.77378 * 13 10 9 33 33 H 1.08998 * 109.47275 * 294.76940 * 13 10 9 34 34 H 0.97005 * 120.00058 * 185.03020 * 18 17 15 35 35 H 1.09003 * 117.49921 * 214.99734 * 23 14 13 36 36 H 1.09001 * 117.49817 * 0.02562 * 23 14 13 37 37 H 1.08999 * 117.49911 * 359.97438 * 24 14 13 38 38 H 1.09002 * 117.49551 * 144.97558 * 24 14 13 39 39 H 1.08003 * 119.94209 * 0.04730 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2033 0.0000 4 6 3.5721 1.2169 0.0005 5 6 4.2816 0.0098 0.0005 6 6 5.7495 0.0155 0.0005 7 8 6.3600 -1.0326 0.0001 8 6 3.5794 -1.2065 0.0005 9 8 4.2539 -2.3828 0.0011 10 16 4.5614 -2.9195 1.3917 11 8 4.9450 -1.7702 2.1340 12 8 5.4759 -3.9827 1.1627 13 6 2.9741 -3.5629 1.9896 14 6 3.1795 -4.2532 3.3394 15 6 4.0467 -5.4854 3.3140 16 1 5.0993 -5.4098 3.5437 17 6 3.4951 -6.7103 3.0032 18 7 2.2436 -6.7862 2.6064 19 14 4.5256 -8.2618 3.1455 20 1 4.9880 -8.4221 4.5475 21 1 3.7062 -9.4376 2.7566 22 1 5.7019 -8.1591 2.2449 23 6 3.2500 -3.3653 4.5835 24 6 2.0130 -4.2305 4.3293 25 6 2.1926 -1.1983 -0.0052 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6489 2.1348 -0.0008 30 1 4.1038 2.1569 0.0001 31 1 6.2859 0.9529 0.0009 32 1 2.5790 -4.2808 1.2708 33 1 2.2691 -2.7398 2.1060 34 1 1.8335 -7.6526 2.4579 35 1 3.9235 -3.6725 5.3836 36 1 3.1495 -2.2894 4.4403 37 1 1.0995 -3.7234 4.0189 38 1 1.8726 -5.1071 4.9618 39 1 1.6479 -2.1309 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872614587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:01 Heat of formation + Delta-G solvation = -85.096541 kcal Electronic energy + Delta-G solvation = -26418.364191 eV Core-core repulsion = 22613.354898 eV Total energy + Delta-G solvation = -3805.009293 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17318 -38.50965 -38.22710 -36.78826 -36.30241 -35.15964 -33.09975 -32.02250 -30.66908 -28.41788 -28.00242 -25.47114 -23.98636 -23.14335 -21.72560 -21.25403 -20.13349 -19.12845 -17.72161 -17.46272 -16.89009 -16.71720 -16.24619 -15.43133 -14.88406 -14.76394 -14.62097 -14.32684 -14.17033 -14.06983 -13.79517 -13.78276 -13.20969 -13.04597 -12.46099 -12.28951 -12.11861 -11.90736 -11.85067 -11.67805 -11.44145 -11.31921 -11.18408 -11.02461 -10.86734 -10.59107 -10.48589 -10.11216 -9.78478 -9.70640 -9.21816 -8.97097 -8.91514 -8.53016 -8.14055 -6.12841 -4.22180 0.25980 0.70799 1.28806 2.36804 2.76769 3.35972 3.38195 3.43634 3.46537 4.05298 4.38414 4.41252 4.46385 4.53013 4.66702 4.80093 4.88705 5.04894 5.14267 5.16204 5.19250 5.33179 5.34415 5.47343 5.64392 5.74328 5.79032 5.85764 5.94191 6.08961 6.18282 6.21402 6.31785 6.55484 6.64121 6.67158 6.94123 7.19234 7.36113 7.43942 7.83713 8.19713 8.84580 9.49163 10.95853 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.005093 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.777048 B = 5496.155022 C = 6305.919971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.036 4.036 3 C -0.130 4.130 4 C -0.051 4.051 5 C -0.180 4.180 6 C 0.381 3.619 7 O -0.441 6.441 8 C 0.147 3.853 9 O -0.667 6.667 10 S 2.595 3.405 11 O -0.970 6.970 12 O -0.905 6.905 13 C -0.581 4.581 14 C 0.045 3.955 15 C -0.510 4.510 16 H 0.071 0.929 17 C 0.079 3.921 18 N -0.878 5.878 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.268 1.268 23 C -0.212 4.212 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 18.273 -6.271 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 C -0.149 4.149 4 C -0.070 4.070 5 C -0.183 4.183 6 C 0.238 3.762 7 O -0.313 6.313 8 C 0.104 3.896 9 O -0.624 6.624 10 S 2.694 3.306 11 O -0.969 6.969 12 O -0.903 6.903 13 C -0.711 4.711 14 C 0.042 3.958 15 C -0.547 4.547 16 H 0.089 0.911 17 C -0.125 4.125 18 N -0.514 5.514 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.250 4.250 24 C -0.176 4.176 25 C -0.171 4.171 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.130 0.870 32 H 0.155 0.845 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.148 17.613 -6.642 19.276 hybrid contribution -0.355 -1.209 0.196 1.276 sum -4.503 16.404 -6.446 18.191 Atomic orbital electron populations 1.20938 0.89837 1.03935 1.03160 1.19997 0.96841 0.91938 0.94883 1.21129 0.94065 0.97972 1.01689 1.21285 0.94162 0.96589 0.94938 1.21219 0.97789 0.92672 1.06576 1.23842 0.87443 0.93910 0.71019 1.90571 1.70576 1.37027 1.33076 1.18261 0.89823 0.81747 0.99806 1.85799 1.76158 1.40925 1.59556 1.05557 0.78194 0.74598 0.72278 1.93501 1.82212 1.49421 1.71728 1.93585 1.59344 1.56116 1.81260 1.30361 1.19588 1.09649 1.11529 1.18241 1.00106 0.94917 0.82499 1.20539 0.95071 0.90312 1.48735 0.91110 1.24944 0.95185 0.99233 0.93145 1.69999 1.12552 1.25109 1.43695 0.86651 0.80808 0.81770 0.79063 1.19887 1.21126 1.19264 1.23253 1.03249 0.95810 1.02666 1.22533 0.90757 1.00200 1.04088 1.21388 0.91852 1.00340 1.03519 0.90204 0.90492 0.90637 0.84475 0.83726 0.87030 0.84459 0.88202 0.92723 0.89322 0.90677 0.91524 0.89382 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.00 36.01 0.36 -0.51 16 2 C -0.04 -0.37 5.88 -104.54 -0.62 -0.98 16 3 C -0.13 -1.10 9.67 -39.64 -0.38 -1.48 16 4 C -0.05 -0.48 9.79 -39.12 -0.38 -0.86 16 5 C -0.18 -2.54 5.30 -104.94 -0.56 -3.10 16 6 C 0.38 5.55 10.74 34.18 0.37 5.92 16 7 O -0.44 -8.87 14.38 -24.21 -0.35 -9.21 16 8 C 0.15 2.46 4.81 -38.58 -0.19 2.28 16 9 O -0.67 -13.80 8.56 -53.93 -0.46 -14.26 16 10 S 2.59 60.53 4.31 -107.50 -0.46 60.07 16 11 O -0.97 -22.39 14.73 -69.87 -1.03 -23.42 16 12 O -0.90 -25.07 17.14 -67.04 -1.15 -26.22 16 13 C -0.58 -12.89 5.17 37.16 0.19 -12.70 16 14 C 0.04 1.11 1.34 -155.66 -0.21 0.90 16 15 C -0.51 -14.40 7.68 -34.44 -0.26 -14.66 16 16 H 0.07 2.05 7.82 -52.49 -0.41 1.64 16 17 C 0.08 2.22 5.39 -17.82 -0.10 2.13 16 18 N -0.88 -24.57 12.93 55.43 0.72 -23.85 16 19 Si 0.89 21.97 29.55 -169.99 -5.02 16.95 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.21 -4.71 9.96 -26.69 -0.27 -4.97 16 24 C -0.14 -3.12 9.44 -26.69 -0.25 -3.37 16 25 C -0.15 -2.04 8.17 -39.48 -0.32 -2.37 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.14 3.13 8.14 -51.92 -0.42 2.71 16 33 H 0.10 1.84 6.95 -51.93 -0.36 1.48 16 34 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 35 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 39 H 0.15 1.85 7.62 -52.48 -0.40 1.45 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -36.87 346.15 -10.10 -46.97 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.95 Total: 1.54 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: -2.61 Total: -33.78 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.72 Total: -23.85 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -2.99 Total: -73.12 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 60.53 SS G_CDS: -0.46 Total: 60.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.87 -10.10 -46.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872614587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.122 kcal (2) G-P(sol) polarization free energy of solvation -36.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds