Wall clock time and date at job start Tue Mar 31 2020 13:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38630 * 119.77234 * 2 1 4 4 C 1.37679 * 120.33778 * 179.97438 * 3 2 1 5 5 C 1.40021 * 119.88062 * 0.02562 * 4 3 2 6 6 C 1.46785 * 120.22101 * 179.97438 * 5 4 3 7 7 O 1.21301 * 119.99440 * 180.02562 * 6 5 4 8 8 C 1.40444 * 119.55480 * 359.97438 * 5 4 3 9 9 O 1.35596 * 120.17088 * 180.02562 * 8 5 4 10 10 S 1.52201 * 114.00037 * 89.99928 * 9 8 5 11 11 O 1.42095 * 104.27780 * 318.93259 * 10 9 8 12 12 O 1.42098 * 104.27528 * 191.07316 * 10 9 8 13 13 C 1.81404 * 104.44432 * 75.00221 * 10 9 8 14 14 C 1.53004 * 109.46719 * 174.76819 * 13 10 9 15 15 C 1.50696 * 115.55104 * 295.24894 * 14 13 10 16 16 H 1.08000 * 119.99842 * 95.23532 * 15 14 13 17 17 C 1.37877 * 119.99995 * 274.95060 * 15 14 13 18 18 N 1.31517 * 119.99767 * 6.42356 * 17 15 14 19 19 Si 1.86795 * 120.00005 * 186.41508 * 17 15 14 20 20 H 1.48501 * 109.47136 * 60.00672 * 19 17 15 21 21 H 1.48501 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47461 * 300.00269 * 19 17 15 23 23 C 1.53002 * 117.49547 * 80.92040 * 14 13 10 24 24 C 1.53002 * 117.49515 * 149.57634 * 14 13 10 25 25 C 1.38054 * 119.77431 * 180.25087 * 2 1 3 26 26 H 1.08999 * 109.46399 * 89.99928 * 1 2 3 27 27 H 1.08995 * 109.47002 * 210.00185 * 1 2 3 28 28 H 1.09002 * 109.46815 * 330.00409 * 1 2 3 29 29 H 1.07998 * 119.83019 * 359.95305 * 3 2 1 30 30 H 1.07993 * 120.05911 * 179.97438 * 4 3 2 31 31 H 1.07996 * 120.00461 * 0.02562 * 6 5 4 32 32 H 1.09004 * 109.47438 * 54.77378 * 13 10 9 33 33 H 1.08998 * 109.47275 * 294.76940 * 13 10 9 34 34 H 0.97005 * 120.00058 * 185.03020 * 18 17 15 35 35 H 1.09003 * 117.49921 * 214.99734 * 23 14 13 36 36 H 1.09001 * 117.49817 * 0.02562 * 23 14 13 37 37 H 1.08999 * 117.49911 * 359.97438 * 24 14 13 38 38 H 1.09002 * 117.49551 * 144.97558 * 24 14 13 39 39 H 1.08003 * 119.94209 * 0.04730 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2033 0.0000 4 6 3.5721 1.2169 0.0005 5 6 4.2816 0.0098 0.0005 6 6 5.7495 0.0155 0.0005 7 8 6.3600 -1.0326 0.0001 8 6 3.5794 -1.2065 0.0005 9 8 4.2539 -2.3828 0.0011 10 16 4.5614 -2.9195 1.3917 11 8 4.9450 -1.7702 2.1340 12 8 5.4759 -3.9827 1.1627 13 6 2.9741 -3.5629 1.9896 14 6 3.1795 -4.2532 3.3394 15 6 4.0467 -5.4854 3.3140 16 1 5.0993 -5.4098 3.5437 17 6 3.4951 -6.7103 3.0032 18 7 2.2436 -6.7862 2.6064 19 14 4.5256 -8.2618 3.1455 20 1 4.9880 -8.4221 4.5475 21 1 3.7062 -9.4376 2.7566 22 1 5.7019 -8.1591 2.2449 23 6 3.2500 -3.3653 4.5835 24 6 2.0130 -4.2305 4.3293 25 6 2.1926 -1.1983 -0.0052 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6489 2.1348 -0.0008 30 1 4.1038 2.1569 0.0001 31 1 6.2859 0.9529 0.0009 32 1 2.5790 -4.2808 1.2708 33 1 2.2691 -2.7398 2.1060 34 1 1.8335 -7.6526 2.4579 35 1 3.9235 -3.6725 5.3836 36 1 3.1495 -2.2894 4.4403 37 1 1.0995 -3.7234 4.0189 38 1 1.8726 -5.1071 4.9618 39 1 1.6479 -2.1309 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872614587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:00 Heat of formation + Delta-G solvation = -109.804477 kcal Electronic energy + Delta-G solvation = -26419.435607 eV Core-core repulsion = 22613.354898 eV Total energy + Delta-G solvation = -3806.080710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.38205 -39.78090 -39.23111 -38.63996 -38.13669 -37.01463 -34.13237 -33.91789 -31.62090 -30.09782 -28.85577 -27.57229 -25.07093 -23.99600 -23.06919 -22.83708 -21.75162 -20.71736 -19.20990 -18.87158 -18.48101 -18.07704 -17.59728 -16.98471 -16.76197 -16.21193 -15.95860 -15.69889 -15.43069 -15.17764 -15.10451 -14.89433 -14.59297 -14.23143 -13.86352 -13.83381 -13.74726 -13.28194 -13.14011 -13.05709 -13.02207 -12.89378 -12.80666 -12.67604 -12.47643 -12.30924 -12.26001 -11.97576 -11.63517 -10.93374 -10.87863 -10.60518 -10.15326 -9.99416 -9.79880 -8.25028 -6.38412 -1.02726 -0.38485 0.13657 1.26299 1.33956 1.38750 1.41228 1.45481 2.37239 2.55107 2.76679 3.01287 3.08942 3.16089 3.30437 3.59394 3.69009 3.85003 3.88093 4.08170 4.09687 4.21227 4.34259 4.39827 4.50436 4.67456 4.71083 4.75796 4.87912 4.90836 4.99323 5.03889 5.12026 5.14161 5.28491 5.36272 5.41865 5.54609 5.67210 5.78440 6.15840 6.42158 6.67588 7.33752 8.83136 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.005093 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.777048 B = 5496.155022 C = 6305.919971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.112 4.112 4 C -0.031 4.031 5 C -0.208 4.208 6 C 0.376 3.624 7 O -0.511 6.511 8 C 0.084 3.916 9 O -0.676 6.676 10 S 2.607 3.393 11 O -0.976 6.976 12 O -0.972 6.972 13 C -0.567 4.567 14 C 0.005 3.995 15 C -0.531 4.531 16 H 0.046 0.954 17 C 0.039 3.961 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.283 1.283 23 C -0.198 4.198 24 C -0.126 4.126 25 C -0.168 4.168 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.188 0.812 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.267 0.733 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 22.284 -6.247 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.032 4.032 3 C -0.130 4.130 4 C -0.049 4.049 5 C -0.212 4.212 6 C 0.238 3.762 7 O -0.388 6.388 8 C 0.043 3.957 9 O -0.635 6.635 10 S 2.708 3.292 11 O -0.975 6.975 12 O -0.970 6.970 13 C -0.698 4.698 14 C 0.003 3.997 15 C -0.568 4.568 16 H 0.064 0.936 17 C -0.163 4.163 18 N -0.529 5.529 19 Si 0.758 3.242 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.209 1.209 23 C -0.235 4.235 24 C -0.165 4.165 25 C -0.188 4.188 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.205 0.795 30 H 0.215 0.785 31 H 0.193 0.807 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.546 21.632 -6.600 23.545 hybrid contribution 0.246 -2.183 0.096 2.199 sum -6.300 19.449 -6.504 21.453 Atomic orbital electron populations 1.21063 0.87467 1.04982 1.04440 1.20479 0.98502 0.91287 0.92938 1.21793 0.93950 0.99101 0.98173 1.21926 0.94765 0.96488 0.91729 1.21609 0.98053 0.93525 1.07995 1.25004 0.88203 0.94947 0.68069 1.90567 1.71833 1.39708 1.36650 1.19033 0.91244 0.81162 1.04309 1.85726 1.77026 1.43222 1.57506 1.05029 0.78007 0.73700 0.72443 1.93441 1.82575 1.48983 1.72461 1.93489 1.62134 1.58512 1.82863 1.30127 1.19746 1.10212 1.09745 1.18360 1.01604 0.95317 0.84466 1.20702 0.94570 0.92434 1.49091 0.93584 1.25524 0.96283 1.01370 0.93140 1.70032 1.13143 1.25706 1.44049 0.85991 0.79292 0.79696 0.79212 1.18699 1.19331 1.20917 1.23308 1.02512 0.96887 1.00768 1.22511 0.91524 0.99944 1.02554 1.21575 0.90771 1.01981 1.04507 0.88667 0.91218 0.87875 0.79456 0.78545 0.80723 0.85855 0.84456 0.92421 0.89539 0.88090 0.88875 0.91033 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.00 71.24 0.71 -0.50 16 2 C -0.03 -0.52 5.88 -19.81 -0.12 -0.64 16 3 C -0.11 -1.22 9.67 22.23 0.21 -1.01 16 4 C -0.03 -0.42 9.79 22.57 0.22 -0.20 16 5 C -0.21 -5.52 5.30 -20.07 -0.11 -5.63 16 6 C 0.38 10.63 10.74 70.06 0.75 11.38 16 7 O -0.51 -21.53 14.38 25.35 0.36 -21.17 16 8 C 0.08 2.84 4.81 22.92 0.11 2.95 16 9 O -0.68 -29.68 8.56 -55.17 -0.47 -30.15 16 10 S 2.61 127.85 4.31 -56.49 -0.24 127.61 16 11 O -0.98 -46.31 14.73 -115.86 -1.71 -48.02 16 12 O -0.97 -58.21 17.14 -118.57 -2.03 -60.24 16 13 C -0.57 -25.75 5.17 71.98 0.37 -25.38 16 14 C 0.00 0.23 1.34 -52.93 -0.07 0.16 16 15 C -0.53 -31.21 7.68 25.60 0.20 -31.01 16 16 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 17 C 0.04 2.27 5.39 84.65 0.46 2.72 16 18 N -0.89 -50.87 12.93 21.45 0.28 -50.59 16 19 Si 0.93 46.21 29.55 68.60 2.03 48.24 16 20 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 23 C -0.20 -8.62 9.96 30.62 0.30 -8.31 16 24 C -0.13 -5.67 9.44 30.62 0.29 -5.38 16 25 C -0.17 -4.38 8.17 22.33 0.18 -4.19 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 28 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 30 H 0.20 0.53 8.06 -2.91 -0.02 0.50 16 31 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.12 5.90 8.14 -2.39 -0.02 5.88 16 33 H 0.14 4.98 6.95 -2.39 -0.02 4.96 16 34 H 0.27 14.36 8.32 -92.70 -0.77 13.59 16 35 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 36 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 38 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.14 3.63 7.62 -2.91 -0.02 3.61 16 Total: -1.00 -88.99 346.15 2.80 -86.20 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.06 Total: 13.15 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 3.52 Total: -65.03 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.28 Total: -50.59 kcal Atomic # 8 Polarization: -155.73 SS G_CDS: -3.85 Total: -159.58 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 127.85 SS G_CDS: -0.24 Total: 127.61 kcal Total: -88.99 2.80 -86.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872614587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.607 kcal (2) G-P(sol) polarization free energy of solvation -88.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds