Wall clock time and date at job start Tue Mar 31 2020 13:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 119.99601 * 2 1 4 4 H 1.48503 * 109.46955 * 270.00210 * 3 2 1 5 5 H 1.48494 * 109.47254 * 30.00197 * 3 2 1 6 6 H 1.48498 * 109.46975 * 150.00039 * 3 2 1 7 7 C 1.40023 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.41340 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78518 * 179.97438 * 9 7 2 11 11 C 1.38303 * 119.13028 * 179.97438 * 10 9 7 12 12 C 1.38697 * 118.66474 * 359.75405 * 11 10 9 13 13 C 1.39627 * 119.49877 * 0.51659 * 12 11 10 14 14 N 1.39271 * 119.57691 * 179.74571 * 13 12 11 15 15 C 1.34772 * 120.00226 * 185.38772 * 14 13 12 16 16 O 1.21276 * 120.00121 * 354.86585 * 15 14 13 17 17 C 1.50708 * 120.00065 * 174.85903 * 15 14 13 18 18 C 1.52997 * 109.47070 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.29944 * 304.73530 * 18 17 15 20 20 C 1.52639 * 109.38591 * 185.00176 * 18 17 15 21 21 S 1.81171 * 109.99538 * 172.98714 * 20 18 17 22 22 C 1.81180 * 103.31173 * 62.61700 * 21 20 18 23 23 C 1.52639 * 109.99062 * 297.38633 * 22 21 20 24 24 S 1.81171 * 109.99540 * 66.84901 * 23 22 21 25 25 N 1.31935 * 120.85111 * 359.46885 * 13 12 11 26 26 H 0.96993 * 120.00183 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.43441 * 0.02562 * 10 9 7 28 28 H 1.07997 * 120.67140 * 179.97438 * 11 10 9 29 29 H 1.08006 * 120.24998 * 180.26023 * 12 11 10 30 30 H 0.96998 * 119.99926 * 5.39819 * 14 13 12 31 31 H 1.09004 * 109.46783 * 60.00738 * 17 15 14 32 32 H 1.08995 * 109.47413 * 300.00449 * 17 15 14 33 33 H 1.09002 * 109.38299 * 52.83185 * 20 18 17 34 34 H 1.08997 * 109.29578 * 293.10122 * 20 18 17 35 35 H 1.08998 * 109.38313 * 177.22420 * 22 21 20 36 36 H 1.08999 * 109.29571 * 57.48862 * 22 21 20 37 37 H 1.09007 * 109.38218 * 187.01248 * 23 22 21 38 38 H 1.09003 * 109.38394 * 306.68505 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0016 11 6 1.3034 -4.8415 -0.0011 12 6 -0.0827 -4.7934 0.0058 13 6 -0.7276 -3.5550 0.0009 14 7 -2.1194 -3.5048 0.0024 15 6 -2.7511 -2.3197 -0.1118 16 8 -2.1109 -1.2898 -0.1221 17 6 -4.2531 -2.2745 -0.2268 18 6 -4.7120 -0.8197 -0.3440 19 1 -4.3256 -0.2508 0.5018 20 6 -6.2375 -0.7673 -0.3351 21 16 -6.7978 0.9541 -0.2650 22 6 -6.1627 1.6627 -1.8067 23 6 -4.6373 1.6104 -1.8156 24 16 -4.0769 -0.1111 -1.8857 25 7 -0.0355 -2.4317 0.0004 26 1 -0.4850 0.8400 0.0004 27 1 3.0886 -3.6559 -0.0021 28 1 1.8216 -5.7891 -0.0023 29 1 -0.6588 -5.7069 0.0106 30 1 -2.6341 -4.3227 0.0858 31 1 -4.6991 -2.7263 0.6593 32 1 -4.5665 -2.8264 -1.1129 33 1 -6.6129 -1.3056 0.5352 34 1 -6.6192 -1.2355 -1.2423 35 1 -6.4897 2.6992 -1.8902 36 1 -6.5492 1.0923 -2.6514 37 1 -4.2619 2.1488 -2.6860 38 1 -4.2539 2.0791 -0.9093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:15 Heat of formation + Delta-G solvation = 23.910185 kcal Electronic energy + Delta-G solvation = -22961.847706 eV Core-core repulsion = 19636.610922 eV Total energy + Delta-G solvation = -3325.236785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.29480 -37.56335 -34.82469 -33.97707 -33.03426 -32.93390 -30.27957 -29.39285 -27.78236 -25.46262 -23.94667 -22.88721 -21.57964 -20.99634 -19.29213 -17.80697 -17.14606 -16.63101 -16.09536 -15.94765 -15.53998 -14.67659 -14.42799 -14.39983 -14.17316 -13.86259 -13.65514 -13.38340 -13.23480 -13.09498 -12.73981 -12.47983 -12.24322 -11.87174 -11.70131 -11.33022 -11.09129 -10.92343 -10.79586 -10.61561 -10.43318 -10.26516 -9.90005 -9.62873 -9.55825 -8.97693 -8.91405 -8.03380 -7.91888 -7.37563 -7.11259 -6.90033 -6.08826 -4.35198 1.42246 1.73414 2.21742 2.62891 2.82522 3.11050 3.19446 3.21752 3.29928 3.77824 3.82878 4.09878 4.49414 4.57413 4.77184 4.84154 4.89705 4.96719 5.14375 5.29654 5.36341 5.40709 5.50420 5.60615 5.67829 5.91398 6.08968 6.15346 6.52467 6.72506 6.87399 6.88996 7.28514 7.59238 7.66976 7.85130 8.10697 8.24536 8.51153 8.78870 9.09657 9.32012 10.29359 10.52963 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.004636 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.793358 B = 6038.435213 C = 7755.125091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.037 4.037 12 C -0.360 4.360 13 C 0.373 3.627 14 N -0.668 5.668 15 C 0.461 3.539 16 O -0.381 6.381 17 C -0.122 4.122 18 C -0.044 4.044 19 H 0.108 0.892 20 C -0.081 4.081 21 S -0.259 6.259 22 C -0.085 4.085 23 C -0.102 4.102 24 S -0.200 6.200 25 N -0.471 5.471 26 H 0.272 0.728 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 0.488 -2.034 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.266 5.266 2 C -0.172 4.172 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.456 4.456 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.135 3.865 14 N -0.316 5.316 15 C 0.241 3.759 16 O -0.243 6.243 17 C -0.165 4.165 18 C -0.175 4.175 19 H 0.126 0.874 20 C -0.231 4.231 21 S -0.031 6.031 22 C -0.235 4.235 23 C -0.252 4.252 24 S 0.029 5.971 25 N -0.190 5.190 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.792 2.355 -2.074 15.122 hybrid contribution 0.512 -0.676 0.032 0.848 sum -14.280 1.679 -2.041 14.523 Atomic orbital electron populations 1.70297 1.05515 1.27383 1.23368 1.26143 0.95146 1.00361 0.95507 0.86573 0.80590 0.82165 0.78973 1.19718 1.20396 1.18850 1.19561 0.93996 0.89406 1.42595 0.90113 1.18377 0.87241 0.91880 0.87899 1.21621 0.98498 0.93595 1.19290 1.20548 0.93222 0.96470 0.95866 1.20481 0.94776 0.94968 1.28315 1.18608 0.83331 0.90891 0.93712 1.43393 1.05080 1.09183 1.73937 1.20479 0.88888 0.85339 0.81206 1.91206 1.64754 1.30264 1.38072 1.21556 0.95966 0.94842 1.04153 1.23049 0.94638 0.99415 1.00426 0.87404 1.23659 0.97091 0.95316 1.07050 1.86722 1.73741 1.11537 1.31119 1.23576 0.97531 1.04702 0.97690 1.23561 0.95865 0.98417 1.07365 1.87206 1.75138 1.08304 1.26491 1.68706 1.06906 1.23134 1.20264 0.91574 0.88694 0.88766 0.89254 0.77029 0.88334 0.88943 0.86786 0.88670 0.87075 0.88806 0.86951 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.68 9.00 55.55 0.50 -17.18 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 3 Si 0.89 19.38 29.56 -169.99 -5.02 14.36 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.43 -11.75 9.14 -37.73 -0.34 -12.09 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.27 7.64 6.55 -85.00 -0.56 7.09 16 10 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.12 9.95 -38.89 -0.39 -8.50 16 13 C 0.37 9.05 7.43 -154.97 -1.15 7.90 16 14 N -0.67 -12.82 5.38 -11.40 -0.06 -12.88 16 15 C 0.46 8.78 7.49 -10.98 -0.08 8.70 16 16 O -0.38 -9.00 10.53 5.56 0.06 -8.94 16 17 C -0.12 -1.57 5.17 -27.88 -0.14 -1.71 16 18 C -0.04 -0.58 2.03 -26.92 -0.05 -0.64 16 19 H 0.11 1.69 7.96 -51.91 -0.41 1.27 16 20 C -0.08 -0.83 5.53 36.97 0.20 -0.62 16 21 S -0.26 -2.91 22.05 -107.50 -2.37 -5.28 16 22 C -0.08 -0.83 6.25 36.97 0.23 -0.60 16 23 C -0.10 -1.23 6.25 36.97 0.23 -1.00 16 24 S -0.20 -3.06 19.80 -107.50 -2.13 -5.19 16 25 N -0.47 -13.12 5.74 -10.26 -0.06 -13.18 16 26 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 27 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 28 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 30 H 0.40 5.79 8.70 -40.82 -0.36 5.43 16 31 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.11 0.98 8.13 -51.92 -0.42 0.55 16 34 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.11 0.91 8.14 -51.92 -0.42 0.48 16 36 H 0.09 0.87 8.14 -51.91 -0.42 0.45 16 37 H 0.11 1.22 8.14 -51.91 -0.42 0.80 16 38 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -32.66 336.73 -11.90 -44.57 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.96 Total: 8.14 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.93 Total: -9.49 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.38 Total: -43.23 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.06 Total: -8.94 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -4.50 Total: -10.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.66 -11.90 -44.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds