Wall clock time and date at job start Tue Mar 31 2020 13:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 119.99601 * 2 1 4 4 H 1.48503 * 109.46955 * 270.00210 * 3 2 1 5 5 H 1.48494 * 109.47254 * 30.00197 * 3 2 1 6 6 H 1.48498 * 109.46975 * 150.00039 * 3 2 1 7 7 C 1.40023 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.41340 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78518 * 179.97438 * 9 7 2 11 11 C 1.38303 * 119.13028 * 179.97438 * 10 9 7 12 12 C 1.38697 * 118.66474 * 359.75405 * 11 10 9 13 13 C 1.39627 * 119.49877 * 0.51659 * 12 11 10 14 14 N 1.39271 * 119.57691 * 179.74571 * 13 12 11 15 15 C 1.34772 * 120.00226 * 185.38772 * 14 13 12 16 16 O 1.21276 * 120.00121 * 354.86585 * 15 14 13 17 17 C 1.50708 * 120.00065 * 174.85903 * 15 14 13 18 18 C 1.52997 * 109.47070 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.29944 * 304.73530 * 18 17 15 20 20 C 1.52639 * 109.38591 * 185.00176 * 18 17 15 21 21 S 1.81171 * 109.99538 * 172.98714 * 20 18 17 22 22 C 1.81180 * 103.31173 * 62.61700 * 21 20 18 23 23 C 1.52639 * 109.99062 * 297.38633 * 22 21 20 24 24 S 1.81171 * 109.99540 * 66.84901 * 23 22 21 25 25 N 1.31935 * 120.85111 * 359.46885 * 13 12 11 26 26 H 0.96993 * 120.00183 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.43441 * 0.02562 * 10 9 7 28 28 H 1.07997 * 120.67140 * 179.97438 * 11 10 9 29 29 H 1.08006 * 120.24998 * 180.26023 * 12 11 10 30 30 H 0.96998 * 119.99926 * 5.39819 * 14 13 12 31 31 H 1.09004 * 109.46783 * 60.00738 * 17 15 14 32 32 H 1.08995 * 109.47413 * 300.00449 * 17 15 14 33 33 H 1.09002 * 109.38299 * 52.83185 * 20 18 17 34 34 H 1.08997 * 109.29578 * 293.10122 * 20 18 17 35 35 H 1.08998 * 109.38313 * 177.22420 * 22 21 20 36 36 H 1.08999 * 109.29571 * 57.48862 * 22 21 20 37 37 H 1.09007 * 109.38218 * 187.01248 * 23 22 21 38 38 H 1.09003 * 109.38394 * 306.68505 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0016 11 6 1.3034 -4.8415 -0.0011 12 6 -0.0827 -4.7934 0.0058 13 6 -0.7276 -3.5550 0.0009 14 7 -2.1194 -3.5048 0.0024 15 6 -2.7511 -2.3197 -0.1118 16 8 -2.1109 -1.2898 -0.1221 17 6 -4.2531 -2.2745 -0.2268 18 6 -4.7120 -0.8197 -0.3440 19 1 -4.3256 -0.2508 0.5018 20 6 -6.2375 -0.7673 -0.3351 21 16 -6.7978 0.9541 -0.2650 22 6 -6.1627 1.6627 -1.8067 23 6 -4.6373 1.6104 -1.8156 24 16 -4.0769 -0.1111 -1.8857 25 7 -0.0355 -2.4317 0.0004 26 1 -0.4850 0.8400 0.0004 27 1 3.0886 -3.6559 -0.0021 28 1 1.8216 -5.7891 -0.0023 29 1 -0.6588 -5.7069 0.0106 30 1 -2.6341 -4.3227 0.0858 31 1 -4.6991 -2.7263 0.6593 32 1 -4.5665 -2.8264 -1.1129 33 1 -6.6129 -1.3056 0.5352 34 1 -6.6192 -1.2355 -1.2423 35 1 -6.4897 2.6992 -1.8902 36 1 -6.5492 1.0923 -2.6514 37 1 -4.2619 2.1488 -2.6860 38 1 -4.2539 2.0791 -0.9093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:12 Heat of formation + Delta-G solvation = 5.171083 kcal Electronic energy + Delta-G solvation = -22962.660295 eV Core-core repulsion = 19636.610922 eV Total energy + Delta-G solvation = -3326.049373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.90441 -39.29609 -36.09577 -35.55923 -34.74903 -33.96603 -32.17999 -31.10981 -29.02503 -27.34817 -24.85502 -24.27209 -23.25960 -22.60242 -20.83536 -19.56612 -18.31457 -17.86261 -17.76693 -17.17081 -16.61676 -16.44145 -16.23457 -15.63686 -15.53685 -15.08185 -14.97178 -14.72626 -14.60108 -14.31296 -14.01130 -13.85886 -13.63691 -13.41890 -13.00080 -12.81154 -12.71110 -12.53326 -12.37474 -12.29602 -11.75543 -11.71525 -11.42973 -11.18291 -10.79987 -10.62700 -10.47073 -9.84335 -9.04394 -8.92586 -8.74922 -8.43763 -8.00222 -6.37448 0.58084 0.72365 0.97659 1.29321 1.36530 1.39281 1.50297 1.53269 1.61987 2.27206 2.27585 2.42188 3.04217 3.50088 3.65055 3.71885 3.99847 4.03933 4.09909 4.16683 4.29933 4.39100 4.44979 4.57297 4.61128 4.61956 4.73876 4.80081 4.89034 4.95351 4.98762 5.12453 5.33800 5.72233 5.91878 5.96493 6.19601 6.42750 6.81242 6.91428 7.13710 7.82994 8.40599 8.60591 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.004636 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.793358 B = 6038.435213 C = 7755.125091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.675 5.675 2 C 0.014 3.986 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.238 3.762 10 C -0.335 4.335 11 C -0.036 4.036 12 C -0.350 4.350 13 C 0.352 3.648 14 N -0.659 5.659 15 C 0.448 3.552 16 O -0.430 6.430 17 C -0.106 4.106 18 C -0.026 4.026 19 H 0.077 0.923 20 C -0.068 4.068 21 S -0.284 6.284 22 C -0.073 4.073 23 C -0.086 4.086 24 S -0.274 6.274 25 N -0.503 5.503 26 H 0.269 0.731 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.419 0.581 31 H 0.139 0.861 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 -0.610 -2.062 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.294 5.294 2 C -0.213 4.213 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.498 4.498 8 H 0.099 0.901 9 C 0.113 3.887 10 C -0.358 4.358 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.113 3.887 14 N -0.309 5.309 15 C 0.231 3.769 16 O -0.295 6.295 17 C -0.149 4.149 18 C -0.157 4.157 19 H 0.096 0.904 20 C -0.219 4.219 21 S -0.056 6.056 22 C -0.223 4.223 23 C -0.236 4.236 24 S -0.046 6.046 25 N -0.222 5.222 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.256 0.744 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.860 1.205 -2.097 17.032 hybrid contribution 1.088 -0.493 0.046 1.195 sum -15.772 0.712 -2.051 15.920 Atomic orbital electron populations 1.70488 1.06777 1.27800 1.24285 1.26915 0.96064 1.03467 0.94846 0.85443 0.79242 0.77475 0.78990 1.19333 1.19824 1.18174 1.19845 0.94255 0.90579 1.45111 0.90093 1.18844 0.88176 0.93151 0.88567 1.21788 0.99037 0.94039 1.20954 1.21012 0.93739 0.97173 0.94101 1.20971 0.95081 0.95920 1.25558 1.19164 0.85495 0.90905 0.93153 1.43432 1.03346 1.10747 1.73340 1.21570 0.91363 0.84443 0.79566 1.91207 1.66523 1.31869 1.39855 1.21538 0.91025 0.95229 1.07071 1.22960 0.96552 0.98832 0.97405 0.90419 1.23616 0.94344 0.94929 1.08965 1.86833 1.73553 1.12817 1.32356 1.23546 0.95415 1.06078 0.97284 1.23518 0.97561 0.95537 1.06962 1.87362 1.77010 1.11682 1.28531 1.68688 1.07014 1.25248 1.21270 0.91972 0.88182 0.84884 0.85220 0.74367 0.84288 0.86517 0.84343 0.87095 0.84980 0.87727 0.86022 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -38.64 9.00 21.84 0.20 -38.44 16 2 C 0.01 0.74 5.50 85.29 0.47 1.21 16 3 Si 0.97 41.43 29.56 68.60 2.03 43.46 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.47 -27.05 9.14 23.47 0.21 -26.84 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 9 C 0.24 13.94 6.55 40.21 0.26 14.20 16 10 C -0.34 -17.35 9.83 22.87 0.22 -17.12 16 11 C -0.04 -1.60 10.15 22.40 0.23 -1.38 16 12 C -0.35 -15.06 9.95 22.72 0.23 -14.83 16 13 C 0.35 16.95 7.43 133.23 0.99 17.94 16 14 N -0.66 -24.38 5.38 -308.38 -1.66 -26.04 16 15 C 0.45 16.84 7.49 87.66 0.66 17.49 16 16 O -0.43 -20.92 10.53 -3.02 -0.03 -20.95 16 17 C -0.11 -2.47 5.17 29.85 0.15 -2.32 16 18 C -0.03 -0.66 2.03 30.47 0.06 -0.60 16 19 H 0.08 2.45 7.96 -2.39 -0.02 2.44 16 20 C -0.07 -1.22 5.53 71.86 0.40 -0.82 16 21 S -0.28 -5.85 22.05 -56.49 -1.25 -7.10 16 22 C -0.07 -1.32 6.25 71.86 0.45 -0.87 16 23 C -0.09 -2.05 6.25 71.86 0.45 -1.60 16 24 S -0.27 -8.44 19.80 -56.49 -1.12 -9.55 16 25 N -0.50 -28.79 5.74 -186.36 -1.07 -29.86 16 26 H 0.27 14.66 8.29 -92.71 -0.77 13.89 16 27 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.42 11.02 8.70 -92.71 -0.81 10.21 16 31 H 0.14 2.15 8.13 -2.38 -0.02 2.13 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.14 1.82 8.13 -2.39 -0.02 1.80 16 34 H 0.11 1.69 8.14 -2.40 -0.02 1.67 16 35 H 0.13 1.86 8.14 -2.40 -0.02 1.84 16 36 H 0.10 1.71 8.14 -2.40 -0.02 1.69 16 37 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -76.13 336.73 2.16 -73.97 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.28 Total: 30.05 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.78 Total: -15.53 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.53 Total: -94.34 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.03 Total: -20.95 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: -14.29 SS G_CDS: -2.36 Total: -16.65 kcal Total: -76.13 2.16 -73.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.139 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds