Wall clock time and date at job start Tue Mar 31 2020 13:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48500 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46790 * 299.99525 * 3 2 1 6 6 H 1.48491 * 109.47292 * 59.99653 * 3 2 1 7 7 C 1.40029 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99847 * 180.02562 * 7 2 1 9 9 C 1.41335 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.40610 * 119.78585 * 180.02562 * 9 7 2 11 11 C 1.38310 * 119.13143 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.66286 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.50249 * 359.97438 * 12 11 10 14 14 N 1.39272 * 119.57552 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99580 * 185.32079 * 14 13 12 16 16 O 1.21276 * 120.00490 * 354.85311 * 15 14 13 17 17 C 1.50700 * 119.99716 * 174.85265 * 15 14 13 18 18 C 1.53004 * 109.47476 * 179.97438 * 17 15 14 19 19 H 1.09008 * 109.37970 * 55.20972 * 18 17 15 20 20 C 1.52628 * 109.38729 * 175.00045 * 18 17 15 21 21 S 1.81176 * 109.99318 * 186.90594 * 20 18 17 22 22 C 1.81175 * 103.31330 * 297.38686 * 21 20 18 23 23 C 1.52628 * 109.99410 * 62.61379 * 22 21 20 24 24 S 1.80919 * 109.31986 * 295.43010 * 18 17 15 25 25 N 1.31933 * 120.84654 * 0.26210 * 13 12 11 26 26 H 0.97006 * 120.00090 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.43934 * 359.97438 * 10 9 7 28 28 H 1.07997 * 120.66752 * 179.97438 * 11 10 9 29 29 H 1.08008 * 120.24727 * 180.02562 * 12 11 10 30 30 H 0.96990 * 119.99957 * 5.32119 * 14 13 12 31 31 H 1.09007 * 109.47047 * 60.00036 * 17 15 14 32 32 H 1.08994 * 109.47341 * 300.00069 * 17 15 14 33 33 H 1.08997 * 109.38395 * 66.74808 * 20 18 17 34 34 H 1.09002 * 109.38893 * 307.06561 * 20 18 17 35 35 H 1.08997 * 109.38464 * 302.45135 * 22 21 20 36 36 H 1.09005 * 109.38304 * 182.77415 * 22 21 20 37 37 H 1.09007 * 109.38393 * 53.30800 * 23 22 21 38 38 H 1.09000 * 109.38475 * 173.09806 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0005 10 6 2.0085 -3.6518 0.0016 11 6 1.3033 -4.8416 0.0011 12 6 -0.0828 -4.7934 -0.0011 13 6 -0.7278 -3.5549 -0.0021 14 7 -2.1196 -3.5048 -0.0048 15 6 -2.7508 -2.3190 -0.1140 16 8 -2.1106 -1.2891 -0.1160 17 6 -4.2524 -2.2731 -0.2338 18 6 -4.7111 -0.8175 -0.3425 19 1 -4.1959 -0.3370 -1.1744 20 6 -6.2169 -0.7779 -0.5883 21 16 -6.7456 0.9227 -0.9216 22 6 -6.3459 1.7929 0.6164 23 6 -4.8401 1.7533 0.8622 24 16 -4.3136 0.0517 1.1936 25 7 -0.0356 -2.4318 -0.0062 26 1 -0.4850 0.8401 -0.0004 27 1 3.0885 -3.6560 0.0021 28 1 1.8216 -5.7891 0.0015 29 1 -0.6590 -5.7069 -0.0011 30 1 -2.6345 -4.3231 0.0719 31 1 -4.7014 -2.7302 0.6480 32 1 -4.5628 -2.8197 -1.1243 33 1 -6.7374 -1.1523 0.2932 34 1 -6.4605 -1.4068 -1.4446 35 1 -6.8610 1.3125 1.4482 36 1 -6.6730 2.8300 0.5408 37 1 -4.3196 2.1277 -0.0194 38 1 -4.5968 2.3807 1.7196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:18 Heat of formation + Delta-G solvation = 5.166785 kcal Electronic energy + Delta-G solvation = -22953.961118 eV Core-core repulsion = 19627.911558 eV Total energy + Delta-G solvation = -3326.049560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.90665 -39.29798 -36.09926 -35.56239 -34.75033 -33.96694 -32.18135 -31.11162 -29.02745 -27.34891 -24.85232 -24.27430 -23.26198 -22.60876 -20.83601 -19.56813 -18.32544 -17.82442 -17.77890 -17.19509 -16.62673 -16.44674 -16.23664 -15.64846 -15.46092 -15.08644 -14.96069 -14.81280 -14.61100 -14.27735 -14.01238 -13.85953 -13.64172 -13.39726 -13.02104 -12.83073 -12.71055 -12.51985 -12.37157 -12.29927 -11.73422 -11.71329 -11.44144 -11.18265 -10.80501 -10.62914 -10.47226 -9.84552 -9.04394 -8.92463 -8.75257 -8.43351 -8.00343 -6.37558 0.58024 0.72374 0.97086 1.28874 1.36699 1.39298 1.51165 1.52787 1.62329 2.27319 2.27578 2.41732 3.03955 3.50012 3.65293 3.71630 4.00186 4.03349 4.10111 4.16986 4.29916 4.38135 4.45260 4.57543 4.61192 4.62172 4.74169 4.80049 4.88889 4.95321 4.98777 5.12326 5.33912 5.72212 5.91814 5.96455 6.19867 6.42707 6.81126 6.91286 7.13651 7.82818 8.40471 8.60606 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.004618 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.590410 B = 6061.736274 C = 7794.334100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.675 5.675 2 C 0.013 3.987 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.238 3.762 10 C -0.335 4.335 11 C -0.036 4.036 12 C -0.350 4.350 13 C 0.352 3.648 14 N -0.659 5.659 15 C 0.448 3.552 16 O -0.430 6.430 17 C -0.106 4.106 18 C -0.028 4.028 19 H 0.076 0.924 20 C -0.068 4.068 21 S -0.285 6.285 22 C -0.073 4.073 23 C -0.086 4.086 24 S -0.270 6.270 25 N -0.503 5.503 26 H 0.270 0.730 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.419 0.581 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 -0.495 0.296 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.294 5.294 2 C -0.213 4.213 3 Si 0.788 3.212 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.497 4.497 8 H 0.099 0.901 9 C 0.112 3.888 10 C -0.358 4.358 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.113 3.887 14 N -0.308 5.308 15 C 0.231 3.769 16 O -0.294 6.294 17 C -0.148 4.148 18 C -0.159 4.159 19 H 0.094 0.906 20 C -0.218 4.218 21 S -0.057 6.057 22 C -0.223 4.223 23 C -0.236 4.236 24 S -0.042 6.042 25 N -0.223 5.223 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.256 0.744 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.155 0.845 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.007 1.317 0.269 17.060 hybrid contribution 1.071 -0.486 0.047 1.178 sum -15.936 0.831 0.316 15.960 Atomic orbital electron populations 1.70494 1.06756 1.27787 1.24327 1.26921 0.96070 1.03472 0.94855 0.85392 0.79687 0.77802 0.78302 1.17996 1.19674 1.19690 1.19868 0.94248 0.90561 1.45060 0.90100 1.18847 0.88166 0.93165 0.88572 1.21787 0.99038 0.94035 1.20935 1.21014 0.93736 0.97176 0.94091 1.20972 0.95078 0.95914 1.25530 1.19166 0.85486 0.90910 0.93163 1.43432 1.03348 1.10645 1.73423 1.21565 0.91366 0.84417 0.79596 1.91208 1.66438 1.31778 1.40013 1.21534 0.90938 0.95186 1.07185 1.22927 0.97495 0.98000 0.97488 0.90576 1.23612 0.94685 0.95245 1.08299 1.86846 1.82563 1.09821 1.26465 1.23544 0.96475 1.04897 0.97403 1.23527 0.97620 0.95889 1.06595 1.87260 1.85291 1.08716 1.22909 1.68690 1.07027 1.25260 1.21297 0.91931 0.88182 0.84870 0.85203 0.74385 0.86344 0.84489 0.86997 0.84480 0.87665 0.85008 0.90196 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -38.64 8.99 21.84 0.20 -38.45 16 2 C 0.01 0.73 5.50 85.29 0.47 1.20 16 3 Si 0.97 41.43 29.56 68.60 2.03 43.46 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.47 -27.00 9.14 23.47 0.21 -26.78 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 9 C 0.24 13.92 6.55 40.21 0.26 14.18 16 10 C -0.33 -17.31 9.83 22.87 0.22 -17.08 16 11 C -0.04 -1.60 10.15 22.40 0.23 -1.37 16 12 C -0.35 -15.01 9.95 22.72 0.23 -14.78 16 13 C 0.35 16.93 7.43 133.23 0.99 17.92 16 14 N -0.66 -24.39 5.38 -308.38 -1.66 -26.05 16 15 C 0.45 16.85 7.49 87.66 0.66 17.50 16 16 O -0.43 -20.92 10.53 -3.02 -0.03 -20.95 16 17 C -0.11 -2.47 5.16 29.85 0.15 -2.32 16 18 C -0.03 -0.71 2.03 30.47 0.06 -0.64 16 19 H 0.08 2.43 7.96 -2.39 -0.02 2.41 16 20 C -0.07 -1.22 5.53 71.86 0.40 -0.82 16 21 S -0.29 -5.90 22.05 -56.49 -1.25 -7.15 16 22 C -0.07 -1.31 6.25 71.86 0.45 -0.86 16 23 C -0.09 -2.04 6.26 71.86 0.45 -1.59 16 24 S -0.27 -8.19 19.77 -56.49 -1.12 -9.30 16 25 N -0.50 -28.80 5.74 -186.36 -1.07 -29.87 16 26 H 0.27 14.65 8.29 -92.70 -0.77 13.88 16 27 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.42 11.05 8.70 -92.72 -0.81 10.25 16 31 H 0.12 2.21 8.14 -2.38 -0.02 2.20 16 32 H 0.14 2.20 8.13 -2.39 -0.02 2.18 16 33 H 0.11 1.69 8.14 -2.40 -0.02 1.67 16 34 H 0.14 1.85 8.13 -2.39 -0.02 1.83 16 35 H 0.10 1.69 8.14 -2.40 -0.02 1.67 16 36 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -75.96 336.70 2.16 -73.80 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.28 Total: 29.96 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.78 Total: -15.45 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -2.53 Total: -94.37 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.03 Total: -20.95 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: -14.09 SS G_CDS: -2.36 Total: -16.45 kcal Total: -75.96 2.16 -73.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.970 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds