Wall clock time and date at job start Tue Mar 31 2020 13:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31593 * 122.22904 * 2 1 4 4 C 1.29947 * 117.13495 * 180.23899 * 3 2 1 5 5 N 1.38894 * 125.36122 * 179.83997 * 4 3 2 6 6 C 1.34777 * 119.99804 * 179.71702 * 5 4 3 7 7 O 1.21291 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00211 * 179.97438 * 6 5 4 9 9 C 1.52996 * 115.55262 * 180.02562 * 8 6 5 10 10 C 1.53002 * 117.49888 * 325.58198 * 9 8 6 11 11 C 1.53000 * 117.50107 * 34.23960 * 9 8 6 12 12 C 1.52999 * 117.51560 * 325.69994 * 8 6 5 13 13 C 1.52997 * 60.00150 * 107.48040 * 12 8 6 14 14 S 1.76137 * 109.27106 * 359.57194 * 4 3 2 15 15 C 1.34655 * 122.22971 * 179.76753 * 2 1 3 16 16 S 1.76193 * 125.93181 * 0.02562 * 15 2 1 17 17 C 1.76200 * 100.00045 * 179.97438 * 16 15 2 18 18 H 1.08000 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.38432 * 120.00272 * 179.97438 * 17 16 15 20 20 N 1.31813 * 119.99514 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47194 * 60.00011 * 21 19 17 23 23 H 1.48497 * 109.47236 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47395 * 300.00416 * 21 19 17 25 25 H 1.08996 * 109.47121 * 270.23071 * 1 2 3 26 26 H 1.08999 * 109.46529 * 30.23191 * 1 2 3 27 27 H 1.08995 * 109.46517 * 150.22938 * 1 2 3 28 28 H 0.96998 * 120.00148 * 359.71552 * 5 4 3 29 29 H 1.09002 * 115.54951 * 179.91172 * 9 8 6 30 30 H 1.09000 * 117.49996 * 215.00804 * 10 9 8 31 31 H 1.08999 * 117.49664 * 0.02562 * 10 9 8 32 32 H 1.09008 * 117.49673 * 359.97438 * 11 9 8 33 33 H 1.08999 * 117.49942 * 144.97366 * 11 9 8 34 34 H 1.08996 * 117.50278 * 214.96892 * 12 8 6 35 35 H 1.09004 * 117.50245 * 359.97438 * 12 8 6 36 36 H 1.09001 * 117.50189 * 252.51211 * 13 12 8 37 37 H 1.08995 * 117.49958 * 107.48768 * 13 12 8 38 38 H 0.97002 * 119.99903 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2089 1.1132 0.0000 4 6 3.5032 0.9978 -0.0048 5 7 4.4044 2.0547 -0.0088 6 6 5.7298 1.8101 -0.0079 7 8 6.1355 0.6670 -0.0032 8 6 6.7077 2.9567 -0.0128 9 6 8.1862 2.5632 -0.0119 10 6 8.5812 1.3026 0.7599 11 6 8.5800 1.2943 -0.7707 12 6 6.3134 4.2187 -0.7828 13 6 6.3134 4.2247 0.7472 14 16 3.9346 -0.7099 0.0023 15 6 2.2252 -1.1391 0.0046 16 16 1.5698 -2.7745 0.0106 17 6 3.0667 -3.7040 0.0140 18 1 4.0188 -3.1944 0.0125 19 6 3.0223 -5.0876 0.0196 20 7 1.8602 -5.7097 0.0219 21 14 4.6092 -6.0730 0.0224 22 1 5.3999 -5.7346 1.2330 23 1 4.2912 -7.5235 0.0278 24 1 5.3982 -5.7443 -1.1919 25 1 -0.3633 0.0041 1.0276 26 1 -0.3632 0.8879 -0.5174 27 1 -0.3632 -0.8920 -0.5103 28 1 4.0799 2.9687 -0.0123 29 1 8.8934 3.3926 -0.0170 30 1 9.5483 1.3026 1.2627 31 1 7.7877 0.7534 1.2667 32 1 7.7856 0.7396 -1.2703 33 1 9.5461 1.2890 -1.2754 34 1 7.1072 4.7686 -1.2882 35 1 5.3466 4.2197 -1.2863 36 1 5.3466 4.2297 1.2505 37 1 7.1073 4.7785 1.2483 38 1 1.8290 -6.6792 0.0262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888247629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:03 Heat of formation + Delta-G solvation = 56.123906 kcal Electronic energy + Delta-G solvation = -22293.626769 eV Core-core repulsion = 18969.786876 eV Total energy + Delta-G solvation = -3323.839893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88221 -38.72967 -37.41489 -36.04916 -34.18558 -32.81909 -30.45953 -27.12900 -25.79485 -25.55073 -23.77243 -23.01963 -22.10541 -21.71510 -20.71650 -19.12094 -17.94508 -17.53499 -16.78195 -16.04235 -15.45282 -15.36347 -15.33077 -15.09830 -14.32665 -13.96793 -13.88127 -13.44872 -13.19125 -12.68237 -12.58446 -12.24129 -12.03189 -11.88203 -11.66008 -11.39993 -11.30939 -11.22366 -11.11307 -11.05573 -10.71305 -10.51062 -10.27859 -10.23208 -9.67871 -9.65504 -9.51271 -9.06742 -8.74511 -8.65743 -7.80146 -6.59763 -6.50294 -4.27640 1.36318 1.87723 2.27575 2.52911 2.84340 3.08359 3.12735 3.15635 3.32581 3.35209 3.65395 3.97693 3.98422 4.09824 4.18128 4.60747 4.68809 4.82895 4.97943 5.03728 5.07442 5.16454 5.19406 5.22365 5.47838 5.51745 5.65085 5.76429 5.86218 5.97697 6.10772 6.22915 6.26298 6.38291 6.45670 6.50941 6.96352 7.17438 7.33102 7.97858 8.04106 8.51325 8.88656 10.45982 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.004291 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.022703 B = 6523.333503 C = 8405.790432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.476 5.476 4 C 0.187 3.813 5 N -0.615 5.615 6 C 0.540 3.460 7 O -0.494 6.494 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.167 4.167 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.154 4.154 14 S 0.202 5.798 15 C -0.252 4.252 16 S 0.150 5.850 17 C -0.557 4.557 18 H 0.088 0.912 19 C 0.083 3.917 20 N -0.863 5.863 21 Si 0.924 3.076 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.411 0.589 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 17.642 -0.098 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.197 5.197 4 C -0.183 4.183 5 N -0.264 5.264 6 C 0.326 3.674 7 O -0.368 6.368 8 C -0.119 4.119 9 C -0.137 4.137 10 C -0.204 4.204 11 C -0.204 4.204 12 C -0.192 4.192 13 C -0.192 4.192 14 S 0.446 5.554 15 C -0.488 4.488 16 S 0.400 5.600 17 C -0.706 4.706 18 H 0.106 0.894 19 C -0.128 4.128 20 N -0.496 5.496 21 Si 0.749 3.251 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.249 0.751 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.236 15.995 -0.087 17.991 hybrid contribution 1.159 0.449 0.008 1.243 sum 9.394 16.444 -0.080 18.938 Atomic orbital electron populations 1.20115 0.88061 1.02103 1.01777 1.19026 0.96689 0.84584 1.12093 1.65805 1.02833 1.32432 1.18630 1.23742 0.89840 0.92868 1.11896 1.42353 1.04411 1.08030 1.71558 1.19650 0.81139 0.90114 0.76505 1.90657 1.76475 1.22136 1.47575 1.20793 0.93974 0.87977 1.09153 1.21369 0.91101 0.92785 1.08453 1.23078 1.02731 0.99541 0.95037 1.23083 1.02752 0.99418 0.95142 1.23165 1.03852 0.97530 0.94613 1.23166 1.03848 0.97442 0.94705 1.85810 1.01735 0.95302 1.72537 1.28778 1.01345 1.06737 1.11972 1.83066 1.11001 0.84387 1.81503 1.23220 0.93557 0.94047 1.59727 0.89397 1.25020 0.98260 0.96650 0.92896 1.70007 1.24434 1.10395 1.44802 0.86086 0.81186 0.78096 0.79724 1.19200 1.20362 1.19204 0.91891 0.91954 0.91043 0.75092 0.87049 0.89433 0.87268 0.87247 0.89434 0.87148 0.87896 0.87897 0.87147 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.39 6.73 -83.96 -0.57 -0.17 16 3 N -0.48 -9.54 10.55 -9.78 -0.10 -9.64 16 4 C 0.19 3.59 8.40 -87.19 -0.73 2.86 16 5 N -0.61 -9.00 5.20 -11.78 -0.06 -9.06 16 6 C 0.54 7.74 7.20 -10.98 -0.08 7.66 16 7 O -0.49 -8.68 9.35 5.55 0.05 -8.62 16 8 C -0.12 -1.18 2.47 -155.66 -0.38 -1.56 16 9 C -0.12 -1.20 5.84 -90.62 -0.53 -1.73 16 10 C -0.17 -1.98 9.66 -26.69 -0.26 -2.24 16 11 C -0.17 -1.98 9.66 -26.70 -0.26 -2.24 16 12 C -0.15 -1.11 9.59 -26.73 -0.26 -1.37 16 13 C -0.15 -1.11 9.59 -26.73 -0.26 -1.37 16 14 S 0.20 4.44 18.35 -107.50 -1.97 2.47 16 15 C -0.25 -5.82 6.67 29.46 0.20 -5.62 16 16 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 17 C -0.56 -15.20 9.26 30.80 0.29 -14.92 16 18 H 0.09 2.38 5.97 -52.49 -0.31 2.07 16 19 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 20 N -0.86 -23.85 13.22 55.47 0.73 -23.11 16 21 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 28 H 0.41 4.70 7.01 -40.82 -0.29 4.42 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.59 6.28 -51.93 -0.33 1.26 16 32 H 0.11 1.59 6.27 -51.92 -0.33 1.27 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.71 7.55 -51.93 -0.39 0.32 16 36 H 0.10 0.71 7.55 -51.93 -0.39 0.32 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.28 7.13 8.32 -40.82 -0.34 6.79 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -30.74 342.20 -10.53 -41.27 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.51 Total: 3.56 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.57 Total: -19.30 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.57 Total: -41.82 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.05 Total: -8.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 8.22 SS G_CDS: -4.20 Total: 4.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.74 -10.53 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888247629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.394 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds