Wall clock time and date at job start Tue Mar 31 2020 13:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31593 * 122.22904 * 2 1 4 4 C 1.29947 * 117.13495 * 180.23899 * 3 2 1 5 5 N 1.38894 * 125.36122 * 179.83997 * 4 3 2 6 6 C 1.34777 * 119.99804 * 179.71702 * 5 4 3 7 7 O 1.21291 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00211 * 179.97438 * 6 5 4 9 9 C 1.52996 * 115.55262 * 180.02562 * 8 6 5 10 10 C 1.53002 * 117.49888 * 325.58198 * 9 8 6 11 11 C 1.53000 * 117.50107 * 34.23960 * 9 8 6 12 12 C 1.52999 * 117.51560 * 325.69994 * 8 6 5 13 13 C 1.52997 * 60.00150 * 107.48040 * 12 8 6 14 14 S 1.76137 * 109.27106 * 359.57194 * 4 3 2 15 15 C 1.34655 * 122.22971 * 179.76753 * 2 1 3 16 16 S 1.76193 * 125.93181 * 0.02562 * 15 2 1 17 17 C 1.76200 * 100.00045 * 179.97438 * 16 15 2 18 18 H 1.08000 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.38432 * 120.00272 * 179.97438 * 17 16 15 20 20 N 1.31813 * 119.99514 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47194 * 60.00011 * 21 19 17 23 23 H 1.48497 * 109.47236 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47395 * 300.00416 * 21 19 17 25 25 H 1.08996 * 109.47121 * 270.23071 * 1 2 3 26 26 H 1.08999 * 109.46529 * 30.23191 * 1 2 3 27 27 H 1.08995 * 109.46517 * 150.22938 * 1 2 3 28 28 H 0.96998 * 120.00148 * 359.71552 * 5 4 3 29 29 H 1.09002 * 115.54951 * 179.91172 * 9 8 6 30 30 H 1.09000 * 117.49996 * 215.00804 * 10 9 8 31 31 H 1.08999 * 117.49664 * 0.02562 * 10 9 8 32 32 H 1.09008 * 117.49673 * 359.97438 * 11 9 8 33 33 H 1.08999 * 117.49942 * 144.97366 * 11 9 8 34 34 H 1.08996 * 117.50278 * 214.96892 * 12 8 6 35 35 H 1.09004 * 117.50245 * 359.97438 * 12 8 6 36 36 H 1.09001 * 117.50189 * 252.51211 * 13 12 8 37 37 H 1.08995 * 117.49958 * 107.48768 * 13 12 8 38 38 H 0.97002 * 119.99903 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2089 1.1132 0.0000 4 6 3.5032 0.9978 -0.0048 5 7 4.4044 2.0547 -0.0088 6 6 5.7298 1.8101 -0.0079 7 8 6.1355 0.6670 -0.0032 8 6 6.7077 2.9567 -0.0128 9 6 8.1862 2.5632 -0.0119 10 6 8.5812 1.3026 0.7599 11 6 8.5800 1.2943 -0.7707 12 6 6.3134 4.2187 -0.7828 13 6 6.3134 4.2247 0.7472 14 16 3.9346 -0.7099 0.0023 15 6 2.2252 -1.1391 0.0046 16 16 1.5698 -2.7745 0.0106 17 6 3.0667 -3.7040 0.0140 18 1 4.0188 -3.1944 0.0125 19 6 3.0223 -5.0876 0.0196 20 7 1.8602 -5.7097 0.0219 21 14 4.6092 -6.0730 0.0224 22 1 5.3999 -5.7346 1.2330 23 1 4.2912 -7.5235 0.0278 24 1 5.3982 -5.7443 -1.1919 25 1 -0.3633 0.0041 1.0276 26 1 -0.3632 0.8879 -0.5174 27 1 -0.3632 -0.8920 -0.5103 28 1 4.0799 2.9687 -0.0123 29 1 8.8934 3.3926 -0.0170 30 1 9.5483 1.3026 1.2627 31 1 7.7877 0.7534 1.2667 32 1 7.7856 0.7396 -1.2703 33 1 9.5461 1.2890 -1.2754 34 1 7.1072 4.7686 -1.2882 35 1 5.3466 4.2197 -1.2863 36 1 5.3466 4.2297 1.2505 37 1 7.1073 4.7785 1.2483 38 1 1.8290 -6.6792 0.0262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888247629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:02 Heat of formation + Delta-G solvation = 38.491679 kcal Electronic energy + Delta-G solvation = -22294.391360 eV Core-core repulsion = 18969.786876 eV Total energy + Delta-G solvation = -3324.604484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99842 -40.31863 -38.43245 -37.05639 -35.37091 -34.82817 -31.98619 -28.81397 -27.73631 -26.68179 -24.91887 -23.66266 -22.94637 -22.92503 -22.14328 -20.65578 -19.48127 -19.12074 -17.89946 -17.52400 -17.08633 -16.72212 -16.52320 -16.42685 -15.66945 -15.47451 -15.01902 -14.87605 -14.41205 -14.25030 -13.61579 -13.53551 -13.42079 -13.26337 -13.08759 -12.88201 -12.65105 -12.45162 -12.30483 -12.25526 -12.05405 -11.96840 -11.79236 -11.33304 -11.24904 -10.98720 -10.69000 -10.48562 -10.46807 -10.44632 -9.53678 -8.58907 -8.38196 -6.31254 -0.25281 0.19799 0.81357 1.09969 1.25166 1.34063 1.37993 1.46937 1.63363 1.96206 2.13300 2.59558 2.80323 3.08032 3.22379 3.29256 3.37206 3.68083 3.84321 3.92623 4.21367 4.30171 4.33713 4.42212 4.65498 4.71550 4.78245 4.83571 4.86802 4.94570 4.98096 5.00479 5.09793 5.15983 5.27737 5.33475 5.40202 5.47139 5.92352 6.00449 6.77642 6.84380 6.85721 8.48740 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.004291 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.022703 B = 6523.333503 C = 8405.790432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.483 5.483 4 C 0.228 3.772 5 N -0.605 5.605 6 C 0.534 3.466 7 O -0.526 6.526 8 C -0.146 4.146 9 C -0.092 4.092 10 C -0.182 4.182 11 C -0.182 4.182 12 C -0.134 4.134 13 C -0.134 4.134 14 S 0.159 5.841 15 C -0.283 4.283 16 S 0.101 5.899 17 C -0.577 4.577 18 H 0.079 0.921 19 C 0.037 3.963 20 N -0.895 5.895 21 Si 0.984 3.016 22 H -0.266 1.266 23 H -0.262 1.262 24 H -0.266 1.266 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.431 0.569 29 H 0.149 0.851 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.058 21.507 -0.091 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.205 5.205 4 C -0.145 4.145 5 N -0.257 5.257 6 C 0.323 3.677 7 O -0.402 6.402 8 C -0.149 4.149 9 C -0.110 4.110 10 C -0.219 4.219 11 C -0.219 4.219 12 C -0.171 4.171 13 C -0.171 4.171 14 S 0.404 5.596 15 C -0.518 4.518 16 S 0.348 5.652 17 C -0.725 4.725 18 H 0.097 0.903 19 C -0.170 4.170 20 N -0.530 5.530 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.186 1.186 24 H -0.190 1.190 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.273 0.727 29 H 0.166 0.834 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.153 0.847 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.838 19.930 -0.081 22.226 hybrid contribution 0.762 -0.387 0.005 0.854 sum 10.600 19.543 -0.076 22.232 Atomic orbital electron populations 1.20244 0.85622 1.03148 1.03102 1.19709 0.98437 0.84152 1.08167 1.66027 1.02644 1.31372 1.20476 1.24094 0.90186 0.92995 1.07248 1.42547 1.04073 1.07787 1.71250 1.20704 0.81180 0.91103 0.74742 1.90671 1.76773 1.24208 1.48509 1.20825 0.92653 0.87589 1.13845 1.21565 0.91672 0.92680 1.05102 1.22999 1.02647 1.01390 0.94855 1.23003 1.02661 1.01264 0.94977 1.23373 1.04750 0.93991 0.94980 1.23373 1.04742 0.93909 0.95075 1.86029 1.02222 0.98023 1.73328 1.28603 1.01748 1.06055 1.15443 1.82859 1.11129 0.86168 1.85012 1.23406 0.93857 0.94871 1.60398 0.90289 1.25859 1.01346 0.97379 0.92460 1.70084 1.26125 1.10786 1.45985 0.85207 0.77359 0.77391 0.79566 1.19037 1.18643 1.19047 0.90317 0.89445 0.91374 0.72742 0.83370 0.87594 0.90784 0.90767 0.87598 0.84683 0.87483 0.87488 0.84686 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.02 71.24 0.71 -1.39 16 2 C 0.04 1.54 6.73 41.77 0.28 1.82 16 3 N -0.48 -18.71 10.55 -184.86 -1.95 -20.66 16 4 C 0.23 8.54 8.40 179.15 1.50 10.05 16 5 N -0.60 -16.58 5.20 -309.56 -1.61 -18.19 16 6 C 0.53 14.69 7.20 87.66 0.63 15.32 16 7 O -0.53 -18.89 9.35 -3.06 -0.03 -18.92 16 8 C -0.15 -2.51 2.47 -52.93 -0.13 -2.64 16 9 C -0.09 -1.59 5.84 -10.79 -0.06 -1.65 16 10 C -0.18 -4.18 9.66 30.62 0.30 -3.88 16 11 C -0.18 -4.18 9.66 30.62 0.30 -3.89 16 12 C -0.13 -1.27 9.59 30.59 0.29 -0.98 16 13 C -0.13 -1.27 9.59 30.59 0.29 -0.98 16 14 S 0.16 7.23 18.35 -56.49 -1.04 6.20 16 15 C -0.28 -13.50 6.67 67.00 0.45 -13.06 16 16 S 0.10 5.34 20.74 -56.49 -1.17 4.17 16 17 C -0.58 -33.09 9.26 67.87 0.63 -32.47 16 18 H 0.08 4.53 5.97 -2.91 -0.02 4.51 16 19 C 0.04 2.05 5.49 84.74 0.46 2.51 16 20 N -0.90 -51.21 13.22 21.59 0.29 -50.93 16 21 Si 0.98 43.77 29.55 68.60 2.03 45.80 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 2.39 7.37 -2.39 -0.02 2.37 16 28 H 0.43 8.46 7.01 -92.71 -0.65 7.81 16 29 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.24 6.28 -2.39 -0.02 2.22 16 32 H 0.07 2.25 6.27 -2.38 -0.01 2.23 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.97 7.55 -2.38 -0.02 0.96 16 36 H 0.11 0.97 7.55 -2.39 -0.02 0.96 16 37 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.28 14.89 8.32 -92.71 -0.77 14.12 16 Total: -1.00 -71.43 342.20 2.63 -68.80 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.46 Total: 14.97 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 5.66 Total: -31.22 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -3.27 Total: -89.78 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.03 Total: -18.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 12.57 SS G_CDS: -2.21 Total: 10.36 kcal Total: -71.43 2.63 -68.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888247629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.288 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds