Wall clock time and date at job start Tue Mar 31 2020 14:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47148 * 299.99812 * 3 2 1 6 6 H 1.48494 * 109.47198 * 59.99903 * 3 2 1 7 7 C 1.40041 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99962 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00531 * 0.02562 * 9 7 2 11 11 N 1.34785 * 120.00128 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00157 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47140 * 180.02562 * 12 11 9 14 14 C 1.38306 * 119.96204 * 270.27680 * 13 12 11 15 15 C 1.38265 * 120.14784 * 180.27606 * 14 13 12 16 16 C 1.38133 * 120.07407 * 359.44555 * 15 14 13 17 17 C 1.38886 * 119.92263 * 0.28038 * 16 15 14 18 18 N 1.39676 * 120.07123 * 180.02562 * 17 16 15 19 19 S 1.65593 * 120.00331 * 44.99714 * 18 17 16 20 20 O 1.42103 * 104.28001 * 181.06911 * 19 18 17 21 21 O 1.42103 * 104.27687 * 308.92709 * 19 18 17 22 22 C 1.81400 * 104.44947 * 65.00038 * 19 18 17 23 23 C 1.53007 * 117.49691 * 253.74688 * 22 19 18 24 24 C 1.53001 * 117.50087 * 185.08869 * 22 19 18 25 25 C 1.38089 * 119.96065 * 90.00010 * 13 12 11 26 26 H 0.97002 * 119.99946 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99617 * 0.02562 * 11 9 7 28 28 H 1.08996 * 109.46913 * 60.00038 * 12 11 9 29 29 H 1.08999 * 109.46912 * 300.00568 * 12 11 9 30 30 H 1.08001 * 119.92853 * 0.02562 * 14 13 12 31 31 H 1.08002 * 119.96572 * 179.72711 * 15 14 13 32 32 H 1.08000 * 120.03792 * 180.29780 * 16 15 14 33 33 H 0.97002 * 119.99614 * 224.99177 * 18 17 16 34 34 H 1.08994 * 115.55152 * 39.41802 * 22 19 18 35 35 H 1.08996 * 117.50250 * 0.02562 * 23 22 19 36 36 H 1.09000 * 117.49726 * 145.01993 * 23 22 19 37 37 H 1.08993 * 117.50404 * 214.98291 * 24 22 19 38 38 H 1.09006 * 117.49471 * 0.02562 * 24 22 19 39 39 H 1.07998 * 120.03755 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2165 -4.9165 -0.0010 13 6 2.1958 -6.0619 -0.0018 14 6 2.6481 -6.5832 -1.2003 15 6 3.5422 -7.6378 -1.2055 16 6 3.9955 -8.1669 -0.0128 17 6 3.5476 -7.6421 1.1926 18 7 4.0043 -8.1743 2.4005 19 16 5.6154 -8.4972 2.6065 20 8 5.6992 -9.0402 3.9171 21 8 5.9658 -9.2726 1.4685 22 6 6.4152 -6.8704 2.5393 23 6 7.2056 -6.5235 1.2759 24 6 7.9442 -6.8327 2.5806 25 6 2.6448 -6.5861 1.1942 26 1 -0.4850 0.8401 -0.0004 27 1 2.9190 -3.6477 -0.0020 28 1 0.5888 -4.9740 -0.8903 29 1 0.5908 -4.9743 0.8896 30 1 2.2990 -6.1681 -2.1343 31 1 3.8901 -8.0454 -2.1432 32 1 4.6976 -8.9875 -0.0176 33 1 3.3778 -8.3548 3.1186 34 1 5.8783 -6.0617 3.0349 35 1 7.2447 -7.2726 0.4851 36 1 7.1889 -5.4865 0.9407 37 1 8.4132 -5.9990 3.1031 38 1 8.4695 -7.7854 2.6478 39 1 2.2943 -6.1759 2.1298 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890862548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:11 Heat of formation + Delta-G solvation = -55.022997 kcal Electronic energy + Delta-G solvation = -24619.133272 eV Core-core repulsion = 20847.720816 eV Total energy + Delta-G solvation = -3771.412455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71328 -37.69974 -37.29701 -37.12173 -36.34680 -35.39740 -33.44188 -32.38353 -30.71584 -29.18321 -26.87429 -24.91480 -23.93053 -23.00612 -22.55179 -21.60225 -19.76110 -19.45732 -18.13447 -17.99979 -17.29397 -16.77043 -16.24885 -15.92252 -15.36719 -15.27077 -15.08297 -14.49169 -14.07919 -13.97405 -13.80296 -13.21717 -13.20371 -12.89119 -12.56596 -12.44625 -12.37169 -12.08482 -11.97372 -11.62487 -11.54580 -11.50912 -11.26098 -11.24811 -11.18902 -10.91192 -10.81647 -10.58379 -10.42532 -10.22739 -8.90245 -8.89615 -8.43645 -7.63773 -7.56554 -6.22732 -4.68493 -0.13188 1.29291 1.35268 2.23151 2.81936 3.09670 3.18000 3.22093 3.40925 3.66557 3.87052 4.08530 4.14040 4.39123 4.44959 4.54724 4.76438 4.88580 4.97157 5.05496 5.12025 5.24277 5.27596 5.38858 5.41894 5.53216 5.54563 5.73170 5.86883 6.02600 6.15161 6.30143 6.38201 6.50967 6.63155 6.79604 7.03471 7.39413 7.87716 8.02610 8.28374 8.98435 9.48203 10.55405 10.73668 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.003061 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.374381 B = 9145.366453 C =10070.735103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.763 5.763 12 C 0.168 3.832 13 C -0.070 4.070 14 C -0.110 4.110 15 C -0.101 4.101 16 C -0.154 4.154 17 C 0.135 3.865 18 N -1.054 6.054 19 S 2.639 3.361 20 O -0.954 6.954 21 O -0.947 6.947 22 C -0.684 4.684 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.115 4.115 26 H 0.268 0.732 27 H 0.381 0.619 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.425 0.575 34 H 0.162 0.838 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.215 -15.325 2.532 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.419 5.419 12 C 0.044 3.956 13 C -0.071 4.071 14 C -0.129 4.129 15 C -0.120 4.120 16 C -0.175 4.175 17 C 0.039 3.961 18 N -0.805 5.805 19 S 2.732 3.268 20 O -0.944 6.944 21 O -0.937 6.937 22 C -0.793 4.793 23 C -0.157 4.157 24 C -0.166 4.166 25 C -0.137 4.137 26 H 0.079 0.921 27 H 0.212 0.788 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.262 0.738 34 H 0.180 0.820 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.637 -16.066 2.601 21.234 hybrid contribution 0.347 1.563 0.482 1.672 sum 13.984 -14.503 3.083 20.381 Atomic orbital electron populations 1.70031 1.07051 1.27198 1.35344 1.25707 0.94618 1.00295 0.92620 0.86323 0.80441 0.81764 0.78248 1.18821 1.20126 1.20168 1.20901 0.93581 0.89299 1.54370 0.91415 1.18262 0.87219 0.82352 0.76354 1.90606 1.14091 1.86703 1.54884 1.46201 1.08579 1.04181 1.82894 1.19832 0.92089 0.82039 1.01664 1.20092 0.97584 0.96963 0.92503 1.21241 0.97244 0.96358 0.98077 1.21036 0.97035 0.96248 0.97646 1.21886 1.02955 1.01543 0.91112 1.17327 0.99670 0.94717 0.84342 1.53177 1.26897 1.78850 1.21527 1.04198 0.72856 0.75821 0.73937 1.93613 1.85024 1.76216 1.39534 1.93544 1.82713 1.65550 1.51860 1.32479 1.06751 1.25363 1.14692 1.22900 0.97889 1.05234 0.89681 1.22793 0.87634 1.04896 1.01312 1.21096 0.98888 0.94956 0.98796 0.92126 0.78791 0.92221 0.92446 0.85498 0.85446 0.82706 0.73829 0.81993 0.86314 0.86577 0.86569 0.87601 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.83 55.55 0.66 -22.05 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.74 29.56 -169.99 -5.02 14.72 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -15.05 9.54 -35.63 -0.34 -15.39 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.55 15.38 7.75 -12.98 -0.10 15.28 16 10 O -0.58 -18.46 15.02 5.20 0.08 -18.39 16 11 N -0.76 -16.36 5.54 -62.90 -0.35 -16.71 16 12 C 0.17 3.09 5.79 -5.19 -0.03 3.06 16 13 C -0.07 -1.00 5.25 -104.65 -0.55 -1.55 16 14 C -0.11 -1.39 9.70 -39.55 -0.38 -1.77 16 15 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 16 C -0.15 -1.76 9.19 -39.38 -0.36 -2.12 16 17 C 0.13 1.54 6.13 -83.79 -0.51 1.03 16 18 N -1.05 -10.19 5.67 32.41 0.18 -10.01 16 19 S 2.64 26.28 5.75 -107.50 -0.62 25.66 16 20 O -0.95 -12.12 18.08 -57.54 -1.04 -13.16 16 21 O -0.95 -11.06 14.24 -57.54 -0.82 -11.88 16 22 C -0.68 -5.64 6.44 -26.73 -0.17 -5.81 16 23 C -0.12 -0.90 10.17 -26.69 -0.27 -1.17 16 24 C -0.13 -0.86 10.30 -26.69 -0.27 -1.14 16 25 C -0.12 -1.46 9.62 -39.38 -0.38 -1.84 16 26 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 27 H 0.38 7.25 8.44 -40.82 -0.34 6.90 16 28 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 29 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.16 1.76 5.50 -52.49 -0.29 1.47 16 33 H 0.42 3.35 8.92 -34.47 -0.31 3.05 16 34 H 0.16 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.12 0.86 7.68 -51.93 -0.40 0.46 16 36 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -37.19 352.00 -10.18 -47.37 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.68 Total: 9.78 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.87 Total: -10.64 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.49 Total: -48.77 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.78 Total: -43.43 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 26.28 SS G_CDS: -0.62 Total: 25.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.19 -10.18 -47.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890862548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.650 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds