Wall clock time and date at job start Tue Mar 31 2020 13:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48494 * 109.47278 * 273.52919 * 3 2 1 5 5 H 1.48501 * 109.47166 * 33.53321 * 3 2 1 6 6 H 1.48500 * 109.46922 * 153.52921 * 3 2 1 7 7 C 1.38888 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99877 * 341.58373 * 7 2 1 9 9 N 1.37212 * 120.00358 * 161.58280 * 7 2 1 10 10 C 1.34772 * 120.00430 * 125.91394 * 9 7 2 11 11 O 1.21267 * 120.00690 * 184.27841 * 10 9 7 12 12 C 1.50707 * 119.99585 * 4.28747 * 10 9 7 13 13 C 1.53007 * 109.46862 * 186.66436 * 12 10 9 14 14 H 1.09000 * 109.37791 * 305.20831 * 13 12 10 15 15 C 1.52640 * 109.38159 * 185.52882 * 13 12 10 16 16 S 1.81173 * 109.99010 * 172.98727 * 15 13 12 17 17 C 1.81171 * 103.31386 * 62.61453 * 16 15 13 18 18 C 1.52640 * 109.99385 * 297.38283 * 17 16 15 19 19 S 1.81171 * 109.38622 * 64.99564 * 13 12 10 20 20 C 1.39429 * 119.99990 * 305.92363 * 9 7 2 21 21 C 1.39066 * 119.69471 * 5.29782 * 20 9 7 22 22 C 1.38380 * 119.09834 * 180.27870 * 21 20 9 23 23 C 1.38828 * 118.48872 * 359.42799 * 22 21 20 24 24 C 1.38146 * 119.31464 * 0.28206 * 23 22 21 25 25 N 1.31882 * 120.84722 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00049 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46752 * 306.65769 * 12 10 9 28 28 H 1.08995 * 109.47570 * 66.66200 * 12 10 9 29 29 H 1.09000 * 109.38383 * 293.14923 * 15 13 12 30 30 H 1.08998 * 109.38327 * 52.82820 * 15 13 12 31 31 H 1.08997 * 109.38174 * 177.22553 * 17 16 15 32 32 H 1.09002 * 109.29720 * 57.49123 * 17 16 15 33 33 H 1.09001 * 109.37925 * 306.69512 * 18 17 16 34 34 H 1.08998 * 109.38327 * 187.01002 * 18 17 16 35 35 H 1.08008 * 120.45613 * 0.02562 * 21 20 9 36 36 H 1.08004 * 120.75604 * 179.71293 * 22 21 20 37 37 H 1.08005 * 120.34197 * 180.30170 * 23 22 21 38 38 H 1.08004 * 119.57645 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4210 2.0895 -1.3973 5 1 1.4849 2.6300 0.7734 6 1 3.5810 1.4198 0.6241 7 6 2.0086 -1.2028 -0.0005 8 1 1.5101 -2.1143 0.2945 9 7 3.3281 -1.2331 -0.3760 10 6 4.2499 -1.7750 0.4444 11 8 5.4251 -1.7325 0.1482 12 6 3.8201 -2.4339 1.7299 13 6 5.0571 -2.8141 2.5464 14 1 5.7172 -3.4311 1.9368 15 6 4.6267 -3.6025 3.7805 16 16 6.0843 -4.2376 4.6491 17 6 6.9602 -2.7328 5.1497 18 6 7.3906 -1.9444 3.9156 19 16 5.9330 -1.3093 3.0470 20 6 3.7152 -0.7032 -1.6061 21 6 2.7796 -0.0472 -2.3988 22 6 3.1759 0.4690 -3.6200 23 6 4.5023 0.3211 -4.0025 24 6 5.3792 -0.3369 -3.1619 25 7 4.9713 -0.8239 -2.0062 26 1 -0.4850 0.8400 0.0004 27 1 3.2041 -1.7421 2.3044 28 1 3.2443 -3.3312 1.5035 29 1 4.0633 -2.9505 4.4480 30 1 3.9956 -4.4370 3.4747 31 1 7.8413 -3.0038 5.7313 32 1 6.2991 -2.1174 5.7599 33 1 7.9539 -2.5965 3.2481 34 1 8.0216 -1.1100 4.2214 35 1 1.7566 0.0545 -2.0676 36 1 2.4705 0.9793 -4.2591 37 1 4.8450 0.7167 -4.9472 38 1 6.4119 -0.4547 -3.4554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:03 Heat of formation + Delta-G solvation = 13.137186 kcal Electronic energy + Delta-G solvation = -23272.597556 eV Core-core repulsion = 19946.893619 eV Total energy + Delta-G solvation = -3325.703937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79888 -39.90683 -37.07606 -35.83036 -34.29323 -33.98412 -33.12164 -31.36028 -29.05033 -27.21080 -24.93967 -24.68293 -23.89115 -22.92749 -21.11792 -20.04218 -18.30710 -18.09064 -17.76666 -17.40890 -17.06176 -16.74997 -16.33035 -15.89436 -15.86216 -15.44133 -15.11811 -14.97967 -14.83922 -14.57034 -14.28204 -14.09995 -14.00767 -13.75129 -13.52643 -13.25211 -13.02893 -12.97841 -12.39786 -12.35021 -12.16556 -11.73041 -11.43849 -11.23162 -10.98273 -10.90930 -10.61658 -10.45346 -9.84157 -9.00923 -8.93707 -8.64766 -8.59462 -6.48638 0.27837 0.49983 0.53530 0.66263 1.14859 1.23099 1.33032 1.34348 1.57273 1.93499 2.07266 2.31169 2.70951 3.16397 3.44139 3.64439 3.69342 3.81935 4.00215 4.02500 4.07306 4.19552 4.30431 4.33468 4.37675 4.42245 4.56078 4.57357 4.60751 4.67787 4.73879 4.91137 4.97926 5.19775 5.36098 5.47410 5.83903 6.00308 6.25503 6.77757 6.99831 7.34766 7.76550 8.44822 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.004542 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.789390 B = 6163.704764 C = 6888.683711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.244 1.244 5 H -0.273 1.273 6 H -0.295 1.295 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.425 5.425 10 C 0.485 3.515 11 O -0.519 6.519 12 C -0.097 4.097 13 C -0.020 4.020 14 H 0.090 0.910 15 C -0.074 4.074 16 S -0.270 6.270 17 C -0.078 4.078 18 C -0.077 4.077 19 S -0.297 6.297 20 C 0.328 3.672 21 C -0.226 4.226 22 C -0.062 4.062 23 C -0.210 4.210 24 C 0.104 3.896 25 N -0.523 5.523 26 H 0.286 0.714 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -2.377 4.133 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.168 1.168 5 H -0.198 1.198 6 H -0.221 1.221 7 C -0.490 4.490 8 H 0.116 0.884 9 N -0.140 5.140 10 C 0.274 3.726 11 O -0.394 6.394 12 C -0.139 4.139 13 C -0.151 4.151 14 H 0.108 0.892 15 C -0.225 4.225 16 S -0.041 6.041 17 C -0.227 4.227 18 C -0.227 4.227 19 S -0.069 6.069 20 C 0.100 3.900 21 C -0.250 4.250 22 C -0.088 4.088 23 C -0.232 4.232 24 C -0.054 4.054 25 N -0.239 5.239 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.189 0.811 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.697 -2.751 4.685 11.116 hybrid contribution -0.719 1.333 -0.545 1.610 sum 8.978 -1.418 4.140 9.988 Atomic orbital electron populations 1.69759 1.06655 1.29531 1.44546 1.25643 0.95216 0.99730 0.92919 0.86740 0.78924 0.82288 0.80208 1.16827 1.19810 1.22082 1.18836 0.83842 0.96191 1.50143 0.88387 1.41664 1.08429 1.52408 1.11488 1.21401 0.85279 0.79915 0.85969 1.90665 1.17432 1.57159 1.74147 1.21315 0.96958 1.02891 0.92708 1.22972 0.98387 0.95567 0.98198 0.89190 1.23583 0.97843 1.04027 0.97001 1.86691 1.28348 1.16555 1.72516 1.23591 1.04160 0.95956 0.99042 1.23552 0.96875 1.04333 0.97977 1.87403 1.29687 1.17136 1.72683 1.19438 0.89632 0.93204 0.87738 1.21968 1.01446 1.03925 0.97616 1.21760 0.97333 0.95559 0.94103 1.22280 0.93672 1.04148 1.03068 1.23175 1.01201 0.92753 0.88263 1.67661 1.15503 1.22662 1.18079 0.90351 0.88195 0.85952 0.87806 0.84909 0.84100 0.88105 0.89144 0.85093 0.84868 0.82276 0.81100 0.80537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.12 13.96 21.65 0.30 -44.82 16 2 C 0.07 3.75 3.72 84.91 0.32 4.07 16 3 Si 0.89 42.66 24.92 68.60 1.71 44.36 16 4 H -0.24 -11.06 6.15 99.48 0.61 -10.45 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.29 -15.78 7.11 99.48 0.71 -15.07 16 7 C -0.36 -18.50 8.01 84.01 0.67 -17.83 16 8 H 0.10 5.10 7.97 -2.91 -0.02 5.08 16 9 N -0.42 -21.29 2.10 -464.39 -0.97 -22.26 16 10 C 0.48 22.84 7.20 87.66 0.63 23.47 16 11 O -0.52 -26.26 13.29 -2.99 -0.04 -26.30 16 12 C -0.10 -3.58 4.04 29.85 0.12 -3.46 16 13 C -0.02 -0.64 2.02 30.48 0.06 -0.58 16 14 H 0.09 3.13 7.85 -2.39 -0.02 3.11 16 15 C -0.07 -1.82 5.53 71.86 0.40 -1.42 16 16 S -0.27 -6.18 22.05 -56.49 -1.25 -7.42 16 17 C -0.08 -1.46 6.25 71.86 0.45 -1.01 16 18 C -0.08 -1.80 6.25 71.86 0.45 -1.35 16 19 S -0.30 -10.11 20.06 -56.49 -1.13 -11.24 16 20 C 0.33 16.12 6.08 132.91 0.81 16.93 16 21 C -0.23 -10.13 6.11 22.50 0.14 -9.99 16 22 C -0.06 -2.17 10.17 22.44 0.23 -1.94 16 23 C -0.21 -6.49 10.11 22.39 0.23 -6.26 16 24 C 0.10 3.80 11.18 84.66 0.95 4.74 16 25 N -0.52 -24.60 7.92 -192.95 -1.53 -26.12 16 26 H 0.29 13.79 8.31 -92.71 -0.77 13.02 16 27 H 0.10 3.84 7.83 -2.39 -0.02 3.82 16 28 H 0.12 4.00 8.13 -2.39 -0.02 3.98 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.13 2.82 8.12 -2.40 -0.02 2.80 16 31 H 0.14 1.88 8.14 -2.40 -0.02 1.86 16 32 H 0.10 1.85 8.14 -2.40 -0.02 1.83 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.13 2.51 8.14 -2.40 -0.02 2.49 16 35 H 0.13 6.40 4.78 -2.91 -0.01 6.39 16 36 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.18 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -67.24 329.20 3.51 -63.73 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.97 Total: 24.68 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.45 Total: 5.39 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -2.20 Total: -93.20 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.04 Total: -26.30 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.71 Total: 44.36 kcal Atomic # 16 Polarization: -16.29 SS G_CDS: -2.38 Total: -18.67 kcal Total: -67.24 3.51 -63.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds