Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46893 * 300.00261 * 3 2 1 6 6 H 1.48504 * 109.46973 * 60.00239 * 3 2 1 7 7 C 1.38894 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 173.49841 * 7 2 1 9 9 N 1.37206 * 119.99892 * 353.50569 * 7 2 1 10 10 C 1.34782 * 120.00108 * 185.17703 * 9 7 2 11 11 O 1.21268 * 120.00118 * 174.52077 * 10 9 7 12 12 C 1.50706 * 119.99568 * 354.52652 * 10 9 7 13 13 C 1.52999 * 109.46612 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.38381 * 55.21365 * 13 12 10 15 15 C 1.52641 * 109.38003 * 174.99923 * 13 12 10 16 16 S 1.81173 * 109.99149 * 186.89835 * 15 13 12 17 17 C 1.81162 * 103.31927 * 297.38878 * 16 15 13 18 18 C 1.52641 * 109.99368 * 62.61276 * 17 16 15 19 19 S 1.80914 * 109.31915 * 295.41999 * 13 12 10 20 20 C 1.39423 * 120.00326 * 5.17659 * 9 7 2 21 21 C 1.39071 * 119.70028 * 93.46625 * 20 9 7 22 22 C 1.38373 * 119.10304 * 179.97438 * 21 20 9 23 23 C 1.38824 * 118.49324 * 359.97438 * 22 21 20 24 24 C 1.38151 * 119.30990 * 0.02562 * 23 22 21 25 25 N 1.31882 * 120.85264 * 359.73683 * 24 23 22 26 26 H 0.96996 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47115 * 60.00127 * 12 10 9 28 28 H 1.08997 * 109.47217 * 299.99764 * 12 10 9 29 29 H 1.09005 * 109.38098 * 66.74184 * 15 13 12 30 30 H 1.08993 * 109.38528 * 307.06328 * 15 13 12 31 31 H 1.09008 * 109.38523 * 302.45723 * 17 16 15 32 32 H 1.08999 * 109.38441 * 182.77371 * 17 16 15 33 33 H 1.08997 * 109.38644 * 53.31048 * 18 17 16 34 34 H 1.08998 * 109.38468 * 173.10085 * 18 17 16 35 35 H 1.08004 * 120.44504 * 359.97438 * 21 20 9 36 36 H 1.07997 * 120.75399 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.34770 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.57265 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0087 -1.2028 -0.0005 8 1 3.0835 -1.2058 -0.1064 9 7 1.3293 -2.3873 0.1333 10 6 2.0093 -3.5463 0.2377 11 8 1.4150 -4.5806 0.4555 12 6 3.5085 -3.5566 0.0840 13 6 4.0279 -4.9865 0.2466 14 1 3.5161 -5.6399 -0.4601 15 6 5.5284 -5.0152 -0.0321 16 16 6.1236 -6.7263 -0.0440 17 6 5.7964 -7.2938 1.6450 18 6 4.2959 -7.2651 1.9237 19 16 3.7029 -5.5532 1.9337 20 6 -0.0647 -2.3922 0.1614 21 6 -0.7769 -2.5892 -1.0168 22 6 -2.1600 -2.5922 -0.9746 23 6 -2.7857 -2.3979 0.2493 24 6 -2.0152 -2.2081 1.3802 25 7 -0.6982 -2.2148 1.3102 26 1 -0.4850 0.8400 0.0004 27 1 3.9563 -2.9189 0.8462 28 1 3.7749 -3.1831 -0.9047 29 1 6.0511 -4.4557 0.7437 30 1 5.7251 -4.5569 -1.0013 31 1 6.3081 -6.6404 2.3518 32 1 6.1668 -8.3121 1.7627 33 1 3.7731 -7.8245 1.1480 34 1 4.0993 -7.7217 2.8938 35 1 -0.2574 -2.7378 -1.9519 36 1 -2.7396 -2.7423 -1.8734 37 1 -3.8636 -2.3942 0.3166 38 1 -2.4975 -2.0561 2.3345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = 21.753754 kcal Electronic energy + Delta-G solvation = -23100.242113 eV Core-core repulsion = 19774.911819 eV Total energy + Delta-G solvation = -3325.330295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -39.65435 -37.99582 -35.10407 -34.37620 -32.94334 -31.71101 -31.24587 -29.59194 -27.59701 -25.07190 -23.88042 -23.01024 -22.38220 -21.42425 -19.34845 -18.11743 -16.97504 -16.57859 -16.14782 -15.57101 -15.44264 -15.14336 -14.76511 -14.47372 -14.05395 -14.02778 -13.76731 -13.49025 -13.18489 -12.93558 -12.72240 -12.36727 -12.20021 -12.17474 -11.79509 -11.50968 -11.27341 -11.14347 -11.04977 -10.68092 -10.49527 -10.41986 -10.15052 -9.73968 -9.44342 -8.79498 -8.71351 -8.44012 -7.94596 -7.93542 -7.87239 -7.21623 -6.32620 -4.06830 1.54263 1.85899 2.32352 2.35626 2.48449 2.77455 3.05335 3.14486 3.18122 3.69073 3.93939 4.31403 4.59345 4.78118 4.91025 5.00763 5.03846 5.05372 5.10052 5.26838 5.46324 5.55826 5.66564 5.69433 5.70948 5.72769 5.95179 6.01117 6.09489 6.25028 6.29712 6.52424 6.74505 7.12766 7.15711 7.24733 7.44422 7.81594 8.32967 8.94074 9.20537 9.38238 9.71612 10.57134 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.004334 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.034281 B = 6459.085816 C = 7657.686401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.339 4.339 8 H 0.109 0.891 9 N -0.414 5.414 10 C 0.473 3.527 11 O -0.569 6.569 12 C -0.101 4.101 13 C -0.041 4.041 14 H 0.103 0.897 15 C -0.080 4.080 16 S -0.264 6.264 17 C -0.085 4.085 18 C -0.104 4.104 19 S -0.205 6.205 20 C 0.472 3.528 21 C -0.154 4.154 22 C -0.074 4.074 23 C -0.211 4.211 24 C 0.117 3.883 25 N -0.477 5.477 26 H 0.273 0.727 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.529 -7.303 -0.361 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.168 4.168 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.465 4.465 8 H 0.126 0.874 9 N -0.134 5.134 10 C 0.261 3.739 11 O -0.451 6.451 12 C -0.143 4.143 13 C -0.172 4.172 14 H 0.121 0.879 15 C -0.230 4.230 16 S -0.036 6.036 17 C -0.235 4.235 18 C -0.254 4.254 19 S 0.024 5.976 20 C 0.246 3.754 21 C -0.176 4.176 22 C -0.100 4.100 23 C -0.232 4.232 24 C -0.042 4.042 25 N -0.189 5.189 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.607 -7.550 0.511 10.046 hybrid contribution -0.215 1.143 -0.807 1.416 sum 6.392 -6.407 -0.296 9.055 Atomic orbital electron populations 1.69471 1.05770 1.27423 1.47055 1.25235 0.95639 0.99873 0.96028 0.85787 0.79335 0.81153 0.77930 1.19223 1.20700 1.20520 1.19758 0.92822 0.81909 1.52053 0.87378 1.41217 1.01859 1.06666 1.63629 1.19790 0.88902 0.83265 0.81955 1.90646 1.69886 1.31996 1.52555 1.21281 0.94964 0.93588 1.04499 1.23064 0.95500 1.01138 0.97526 0.87851 1.23689 0.97279 0.94896 1.07171 1.86633 1.82511 1.16100 1.18311 1.23551 0.98552 1.05305 0.96105 1.23570 0.96180 0.98998 1.06647 1.87173 1.83016 1.11794 1.15654 1.17329 0.84118 0.86233 0.87769 1.21564 0.94229 1.03573 0.98271 1.21036 0.94019 0.97819 0.97149 1.21651 0.99661 1.07509 0.94335 1.22080 0.89124 0.95828 0.97189 1.67142 1.10068 1.11830 1.29856 0.91456 0.88589 0.88081 0.88506 0.86588 0.88775 0.87240 0.88839 0.87116 0.86998 0.86732 0.86822 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.46 9.78 55.49 0.54 -21.91 16 2 C 0.04 0.93 5.44 -17.49 -0.10 0.84 16 3 Si 0.93 19.32 29.56 -169.99 -5.02 14.30 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.34 -8.33 9.37 -14.90 -0.14 -8.47 16 8 H 0.11 2.39 6.33 -52.49 -0.33 2.06 16 9 N -0.41 -10.42 2.74 -60.71 -0.17 -10.58 16 10 C 0.47 10.96 7.29 -10.98 -0.08 10.88 16 11 O -0.57 -14.47 14.74 5.57 0.08 -14.39 16 12 C -0.10 -1.79 3.55 -27.88 -0.10 -1.89 16 13 C -0.04 -0.65 2.03 -26.92 -0.05 -0.70 16 14 H 0.10 1.78 7.96 -51.91 -0.41 1.37 16 15 C -0.08 -1.00 5.53 36.97 0.20 -0.79 16 16 S -0.26 -3.24 22.05 -107.50 -2.37 -5.61 16 17 C -0.08 -0.90 6.25 36.97 0.23 -0.66 16 18 C -0.10 -1.29 6.26 36.97 0.23 -1.05 16 19 S -0.20 -3.44 19.77 -107.50 -2.13 -5.56 16 20 C 0.47 12.09 2.92 -154.64 -0.45 11.64 16 21 C -0.15 -3.59 9.51 -39.22 -0.37 -3.96 16 22 C -0.07 -1.49 10.17 -39.31 -0.40 -1.89 16 23 C -0.21 -4.10 10.11 -39.40 -0.40 -4.49 16 24 C 0.12 2.54 11.18 -17.56 -0.20 2.34 16 25 N -0.48 -12.32 9.64 -12.34 -0.12 -12.44 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.10 1.68 7.77 -51.93 -0.40 1.28 16 28 H 0.10 1.59 8.03 -51.93 -0.42 1.17 16 29 H 0.10 1.15 8.14 -51.91 -0.42 0.72 16 30 H 0.12 1.28 8.13 -51.92 -0.42 0.85 16 31 H 0.09 0.96 8.14 -51.91 -0.42 0.54 16 32 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.11 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 36 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -31.00 338.66 -10.63 -41.62 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.93 Total: 7.68 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.62 Total: 1.78 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.26 Total: -44.93 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -4.50 Total: -11.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.00 -10.63 -41.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.375 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds