Wall clock time and date at job start Tue Mar 31 2020 13:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46893 * 300.00261 * 3 2 1 6 6 H 1.48504 * 109.46973 * 60.00239 * 3 2 1 7 7 C 1.38894 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 173.49841 * 7 2 1 9 9 N 1.37206 * 119.99892 * 353.50569 * 7 2 1 10 10 C 1.34782 * 120.00108 * 185.17703 * 9 7 2 11 11 O 1.21268 * 120.00118 * 174.52077 * 10 9 7 12 12 C 1.50706 * 119.99568 * 354.52652 * 10 9 7 13 13 C 1.52999 * 109.46612 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.38381 * 55.21365 * 13 12 10 15 15 C 1.52641 * 109.38003 * 174.99923 * 13 12 10 16 16 S 1.81173 * 109.99149 * 186.89835 * 15 13 12 17 17 C 1.81162 * 103.31927 * 297.38878 * 16 15 13 18 18 C 1.52641 * 109.99368 * 62.61276 * 17 16 15 19 19 S 1.80914 * 109.31915 * 295.41999 * 13 12 10 20 20 C 1.39423 * 120.00326 * 5.17659 * 9 7 2 21 21 C 1.39071 * 119.70028 * 93.46625 * 20 9 7 22 22 C 1.38373 * 119.10304 * 179.97438 * 21 20 9 23 23 C 1.38824 * 118.49324 * 359.97438 * 22 21 20 24 24 C 1.38151 * 119.30990 * 0.02562 * 23 22 21 25 25 N 1.31882 * 120.85264 * 359.73683 * 24 23 22 26 26 H 0.96996 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47115 * 60.00127 * 12 10 9 28 28 H 1.08997 * 109.47217 * 299.99764 * 12 10 9 29 29 H 1.09005 * 109.38098 * 66.74184 * 15 13 12 30 30 H 1.08993 * 109.38528 * 307.06328 * 15 13 12 31 31 H 1.09008 * 109.38523 * 302.45723 * 17 16 15 32 32 H 1.08999 * 109.38441 * 182.77371 * 17 16 15 33 33 H 1.08997 * 109.38644 * 53.31048 * 18 17 16 34 34 H 1.08998 * 109.38468 * 173.10085 * 18 17 16 35 35 H 1.08004 * 120.44504 * 359.97438 * 21 20 9 36 36 H 1.07997 * 120.75399 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.34770 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.57265 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0087 -1.2028 -0.0005 8 1 3.0835 -1.2058 -0.1064 9 7 1.3293 -2.3873 0.1333 10 6 2.0093 -3.5463 0.2377 11 8 1.4150 -4.5806 0.4555 12 6 3.5085 -3.5566 0.0840 13 6 4.0279 -4.9865 0.2466 14 1 3.5161 -5.6399 -0.4601 15 6 5.5284 -5.0152 -0.0321 16 16 6.1236 -6.7263 -0.0440 17 6 5.7964 -7.2938 1.6450 18 6 4.2959 -7.2651 1.9237 19 16 3.7029 -5.5532 1.9337 20 6 -0.0647 -2.3922 0.1614 21 6 -0.7769 -2.5892 -1.0168 22 6 -2.1600 -2.5922 -0.9746 23 6 -2.7857 -2.3979 0.2493 24 6 -2.0152 -2.2081 1.3802 25 7 -0.6982 -2.2148 1.3102 26 1 -0.4850 0.8400 0.0004 27 1 3.9563 -2.9189 0.8462 28 1 3.7749 -3.1831 -0.9047 29 1 6.0511 -4.4557 0.7437 30 1 5.7251 -4.5569 -1.0013 31 1 6.3081 -6.6404 2.3518 32 1 6.1668 -8.3121 1.7627 33 1 3.7731 -7.8245 1.1480 34 1 4.0993 -7.7217 2.8938 35 1 -0.2574 -2.7378 -1.9519 36 1 -2.7396 -2.7423 -1.8734 37 1 -3.8636 -2.3942 0.3166 38 1 -2.4975 -2.0561 2.3345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:07 Heat of formation + Delta-G solvation = 4.686349 kcal Electronic energy + Delta-G solvation = -23100.982211 eV Core-core repulsion = 19774.911819 eV Total energy + Delta-G solvation = -3326.070393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.39203 -39.69451 -36.80125 -35.74753 -33.95305 -33.55934 -32.94294 -31.22012 -28.96824 -26.92016 -24.86417 -24.46331 -24.06830 -22.85923 -21.10316 -19.78997 -18.31012 -18.01405 -17.43739 -17.19932 -17.00585 -16.57389 -16.41417 -16.09418 -15.34239 -15.32353 -15.10608 -14.71332 -14.66698 -14.18297 -14.07319 -13.86826 -13.73182 -13.63159 -13.22066 -13.03475 -12.91257 -12.76020 -12.48460 -12.25934 -12.05229 -11.66964 -11.55003 -11.18349 -10.66653 -10.51877 -10.42725 -10.23247 -9.71893 -9.61794 -8.92286 -8.51503 -8.14263 -5.95464 0.57979 0.65538 0.71643 0.82428 1.37001 1.40408 1.45875 1.57862 1.64044 1.94673 2.24155 2.70347 3.19081 3.30205 3.55406 3.68237 3.78424 4.03269 4.04847 4.06000 4.20434 4.28093 4.35815 4.41875 4.53341 4.59184 4.61305 4.63843 4.66906 4.76264 4.85688 4.90785 5.08958 5.39361 5.47175 5.51272 5.73014 6.09587 6.51460 7.09058 7.43806 7.63376 7.92160 8.72871 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.004334 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.034281 B = 6459.085816 C = 7657.686401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.248 1.248 5 H -0.280 1.280 6 H -0.291 1.291 7 C -0.353 4.353 8 H 0.127 0.873 9 N -0.430 5.430 10 C 0.462 3.538 11 O -0.600 6.600 12 C -0.092 4.092 13 C -0.021 4.021 14 H 0.083 0.917 15 C -0.073 4.073 16 S -0.274 6.274 17 C -0.077 4.077 18 C -0.083 4.083 19 S -0.281 6.281 20 C 0.444 3.556 21 C -0.181 4.181 22 C -0.070 4.070 23 C -0.200 4.200 24 C 0.098 3.902 25 N -0.522 5.522 26 H 0.266 0.734 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -7.541 -0.739 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.171 1.171 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.479 4.479 8 H 0.145 0.855 9 N -0.150 5.150 10 C 0.252 3.748 11 O -0.485 6.485 12 C -0.134 4.134 13 C -0.153 4.153 14 H 0.101 0.899 15 C -0.223 4.223 16 S -0.046 6.046 17 C -0.226 4.226 18 C -0.233 4.233 19 S -0.054 6.054 20 C 0.218 3.782 21 C -0.204 4.204 22 C -0.096 4.096 23 C -0.220 4.220 24 C -0.060 4.060 25 N -0.235 5.235 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.540 -7.802 0.119 10.851 hybrid contribution -0.618 1.103 -0.650 1.422 sum 6.922 -6.699 -0.531 9.647 Atomic orbital electron populations 1.69674 1.07096 1.27407 1.48091 1.26134 0.96438 1.02921 0.95788 0.84788 0.79193 0.76839 0.77064 1.17112 1.20622 1.21725 1.20250 0.93821 0.82074 1.51780 0.85532 1.41567 1.02293 1.07326 1.63805 1.20696 0.90917 0.82423 0.80753 1.90600 1.71183 1.32932 1.53763 1.21270 0.91149 0.95334 1.05652 1.22901 0.97534 0.99104 0.95725 0.89881 1.23601 0.94548 0.95712 1.08456 1.86698 1.82087 1.15870 1.19912 1.23585 0.96976 1.07073 0.95015 1.23576 0.97306 0.94916 1.07522 1.87349 1.84435 1.16265 1.17320 1.17658 0.84634 0.87431 0.88467 1.21716 0.95925 1.05180 0.97529 1.21531 0.93030 0.95953 0.99121 1.22100 1.01792 1.05039 0.93062 1.22681 0.88444 0.95528 0.99390 1.67091 1.12149 1.13623 1.30644 0.92235 0.88260 0.85988 0.87561 0.84838 0.87968 0.84341 0.89521 0.85210 0.87496 0.82814 0.82237 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.10 9.78 21.65 0.21 -46.89 16 2 C -0.01 -0.55 5.44 84.91 0.46 -0.08 16 3 Si 1.00 39.65 29.56 68.60 2.03 41.68 16 4 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.35 -17.56 9.37 84.01 0.79 -16.78 16 8 H 0.13 5.54 6.33 -2.91 -0.02 5.53 16 9 N -0.43 -22.28 2.74 -464.37 -1.27 -23.55 16 10 C 0.46 22.08 7.29 87.66 0.64 22.72 16 11 O -0.60 -31.84 14.74 -2.99 -0.04 -31.88 16 12 C -0.09 -3.27 3.55 29.85 0.11 -3.17 16 13 C -0.02 -0.67 2.03 30.47 0.06 -0.61 16 14 H 0.08 2.92 7.96 -2.40 -0.02 2.90 16 15 C -0.07 -1.70 5.53 71.86 0.40 -1.30 16 16 S -0.27 -6.17 22.05 -56.49 -1.25 -7.42 16 17 C -0.08 -1.43 6.25 71.86 0.45 -0.98 16 18 C -0.08 -1.96 6.26 71.86 0.45 -1.51 16 19 S -0.28 -9.52 19.77 -56.49 -1.12 -10.64 16 20 C 0.44 23.39 2.92 132.91 0.39 23.78 16 21 C -0.18 -8.62 9.51 22.50 0.21 -8.40 16 22 C -0.07 -2.74 10.17 22.44 0.23 -2.52 16 23 C -0.20 -7.40 10.11 22.39 0.23 -7.17 16 24 C 0.10 4.24 11.18 84.66 0.95 5.19 16 25 N -0.52 -27.67 9.64 -192.95 -1.86 -29.53 16 26 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.10 3.47 7.77 -2.39 -0.02 3.45 16 28 H 0.12 3.75 8.03 -2.39 -0.02 3.73 16 29 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.13 2.64 8.13 -2.40 -0.02 2.62 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.14 1.86 8.14 -2.40 -0.02 1.84 16 33 H 0.09 2.17 8.14 -2.40 -0.02 2.15 16 34 H 0.13 2.54 8.14 -2.40 -0.02 2.52 16 35 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 37 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.16 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -70.55 338.66 3.12 -67.43 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 1.06 Total: 31.62 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.36 Total: 9.18 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -2.92 Total: -99.97 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.04 Total: -31.88 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: -15.69 SS G_CDS: -2.36 Total: -18.05 kcal Total: -70.55 3.12 -67.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.116 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds