Wall clock time and date at job start Tue Mar 31 2020 13:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.30893 * 125.15295 * 2 1 4 4 N 1.37156 * 116.61905 * 179.97438 * 3 2 1 5 5 C 1.35371 * 113.82408 * 359.97438 * 4 3 2 6 6 N 1.33061 * 121.33739 * 179.97438 * 5 4 3 7 7 C 1.32419 * 121.90982 * 0.04668 * 6 5 4 8 8 C 1.50702 * 120.25929 * 179.97438 * 7 6 5 9 9 S 1.81398 * 109.46987 * 284.95529 * 8 7 6 10 10 C 1.81399 * 102.99825 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46955 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47169 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47600 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99525 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00552 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99613 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00374 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47213 * 60.00191 * 17 15 13 19 19 H 1.48495 * 109.47496 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47126 * 300.00579 * 17 15 13 21 21 C 1.37878 * 119.47666 * 359.95648 * 7 6 5 22 22 C 1.36340 * 127.31696 * 179.97438 * 4 3 2 23 23 O 1.22095 * 120.20019 * 0.02562 * 22 4 3 24 24 S 1.75722 * 125.15339 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46852 * 300.00649 * 1 2 3 27 27 H 1.09002 * 109.46961 * 59.99774 * 1 2 3 28 28 H 1.07997 * 121.69315 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.46908 * 44.95990 * 8 7 6 30 30 H 1.09002 * 109.46803 * 164.95963 * 8 7 6 31 31 H 1.09007 * 109.47120 * 299.99900 * 10 9 8 32 32 H 1.08994 * 109.47400 * 60.00106 * 10 9 8 33 33 H 1.09004 * 109.47055 * 299.99238 * 11 10 9 34 34 H 1.08993 * 109.48069 * 59.99785 * 11 10 9 35 35 H 1.09000 * 109.47175 * 299.99940 * 12 11 10 36 36 H 1.09003 * 109.47103 * 59.99756 * 12 11 10 37 37 H 0.97005 * 119.99828 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.59472 * 180.29292 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.0702 0.0000 4 7 3.6170 0.8667 0.0005 5 6 3.9740 -0.4391 0.0016 6 7 5.2527 -0.8069 0.0017 7 6 6.2361 0.0799 0.0018 8 6 7.6718 -0.3783 0.0025 9 16 8.1130 -0.9819 1.6552 10 6 9.8465 -1.4789 1.4587 11 6 10.3755 -2.0207 2.7882 12 6 11.8374 -2.4405 2.6224 13 6 12.3587 -2.9735 3.9320 14 1 11.7118 -3.0097 4.7962 15 6 13.6611 -3.4160 4.0269 16 7 14.4486 -3.3725 2.9745 17 14 14.3070 -4.0774 5.6500 18 1 13.4981 -5.2523 6.0629 19 1 15.7259 -4.4848 5.4891 20 1 14.2106 -3.0205 6.6887 21 6 5.9362 1.4256 0.0008 22 6 4.5953 1.8163 0.0002 23 8 4.3009 3.0013 -0.0003 24 16 2.5187 -1.4367 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8360 2.0632 -0.0004 29 1 7.7972 -1.1817 -0.7233 30 1 8.3197 0.4567 -0.2642 31 1 9.9179 -2.2549 0.6964 32 1 10.4397 -0.6163 1.1557 33 1 10.3042 -1.2451 3.5508 34 1 9.7823 -2.8835 3.0910 35 1 11.9084 -3.2162 1.8600 36 1 12.4310 -1.5779 2.3195 37 1 15.3650 -3.6835 3.0413 38 1 6.7239 2.1643 -0.0039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902599116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:27 Heat of formation + Delta-G solvation = 20.372965 kcal Electronic energy + Delta-G solvation = -20843.736783 eV Core-core repulsion = 17518.346613 eV Total energy + Delta-G solvation = -3325.390170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.72752 -38.25565 -38.03016 -34.46493 -33.99741 -32.03037 -31.78710 -29.83060 -27.61977 -27.24925 -26.16999 -23.54616 -22.69681 -21.74162 -20.27327 -19.30223 -18.79203 -17.66366 -17.14955 -16.51441 -15.97141 -15.62800 -14.93332 -14.77328 -14.68038 -14.58482 -14.44862 -14.12187 -13.86433 -13.65149 -13.44852 -13.25405 -13.01071 -12.48028 -12.32591 -11.86501 -11.73082 -11.66600 -10.92798 -10.85604 -10.67869 -10.58353 -10.44514 -10.43054 -10.01441 -9.79618 -9.57264 -9.30540 -9.11575 -8.36400 -8.10656 -7.47292 -6.01633 -4.04143 -0.35028 0.08059 0.83933 0.84949 1.21394 1.78310 1.96026 2.75602 3.21460 3.34066 3.38043 3.41121 3.53236 3.78517 4.13469 4.29723 4.45637 4.52231 4.77548 4.84089 4.90458 5.01079 5.17346 5.25275 5.30980 5.34257 5.45772 5.48775 5.60552 5.72911 5.99167 6.10447 6.54043 6.70175 7.00746 7.14659 7.29251 7.62812 7.75012 7.97064 8.38869 9.01915 9.59984 11.09603 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.001990 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.834734 B =14069.249729 C =14612.141284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.202 4.202 3 C 0.054 3.946 4 N -0.456 5.456 5 C 0.301 3.699 6 N -0.497 5.497 7 C 0.236 3.764 8 C -0.051 4.051 9 S -0.244 6.244 10 C -0.075 4.075 11 C -0.095 4.095 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.293 4.293 22 C 0.529 3.471 23 O -0.526 6.526 24 S 0.220 5.780 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.191 0.809 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.835 6.721 -10.704 32.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.320 4.320 3 C -0.073 4.073 4 N -0.166 5.166 5 C -0.066 4.066 6 N -0.225 5.225 7 C 0.107 3.893 8 C -0.199 4.199 9 S -0.014 6.014 10 C -0.223 4.223 11 C -0.134 4.134 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.324 4.324 22 C 0.332 3.668 23 O -0.405 6.405 24 S 0.471 5.529 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.208 0.792 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -30.392 5.271 -9.873 32.387 hybrid contribution 1.455 1.899 -0.250 2.406 sum -28.937 7.170 -10.123 31.484 Atomic orbital electron populations 1.20330 0.84771 1.04133 1.04136 1.23955 1.02045 0.94801 1.11249 1.20674 0.80999 1.02567 1.03074 1.45212 1.07982 1.08630 1.54817 1.26129 0.99046 0.85066 0.96327 1.67948 0.94503 1.35534 1.24498 1.20582 0.93270 0.88955 0.86521 1.22219 0.91849 1.05197 1.00624 1.87190 1.17960 1.83361 1.12937 1.23716 0.90789 1.03415 1.04426 1.21475 0.99776 0.99931 0.92242 1.19100 0.87995 0.96564 0.97418 1.21181 0.96669 1.41681 0.96444 0.92592 1.25018 0.96993 0.95869 0.96559 1.69951 1.07019 1.47440 1.29072 0.86624 0.77776 0.79438 0.83983 1.20188 1.21286 1.20204 1.22578 0.94842 0.97336 1.17670 1.17260 0.85264 0.85067 0.79191 1.90987 1.82705 1.15047 1.51716 1.85426 0.86923 1.02374 1.78132 0.90213 0.89468 0.89521 0.79188 0.87386 0.87539 0.90197 0.90252 0.92334 0.92278 0.96357 0.96376 0.92910 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.13 10.36 36.00 0.37 0.24 16 2 C -0.20 -1.06 6.42 -36.00 -0.23 -1.29 16 3 C 0.05 0.40 10.31 -16.86 -0.17 0.23 16 4 N -0.46 -4.97 2.82 -66.37 -0.19 -5.15 16 5 C 0.30 3.25 8.32 -87.90 -0.73 2.52 16 6 N -0.50 -6.32 10.36 -9.01 -0.09 -6.41 16 7 C 0.24 2.95 6.07 -82.47 -0.50 2.45 16 8 C -0.05 -0.60 6.33 36.01 0.23 -0.38 16 9 S -0.24 -3.77 21.72 -107.50 -2.33 -6.10 16 10 C -0.08 -1.26 5.94 37.16 0.22 -1.04 16 11 C -0.10 -1.96 5.16 -26.73 -0.14 -2.10 16 12 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C -0.29 -3.64 9.67 -39.18 -0.38 -4.02 16 22 C 0.53 7.05 7.51 -15.02 -0.11 6.94 16 23 O -0.53 -8.27 17.46 4.83 0.08 -8.18 16 24 S 0.22 1.50 23.36 -107.50 -2.51 -1.01 16 25 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.19 1.14 8.00 -52.49 -0.42 0.72 16 29 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.05 7.98 -51.92 -0.41 0.64 16 31 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.17 1.83 8.03 -52.49 -0.42 1.41 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -34.05 356.97 -10.97 -45.01 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -5.02 Total: -4.79 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.00 Total: -9.41 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.46 Total: -37.59 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -4.85 Total: -7.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.05 -10.97 -45.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902599116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.385 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds