Wall clock time and date at job start Tue Mar 31 2020 13:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.30893 * 125.15295 * 2 1 4 4 N 1.37156 * 116.61905 * 179.97438 * 3 2 1 5 5 C 1.35371 * 113.82408 * 359.97438 * 4 3 2 6 6 N 1.33061 * 121.33739 * 179.97438 * 5 4 3 7 7 C 1.32419 * 121.90982 * 0.04668 * 6 5 4 8 8 C 1.50702 * 120.25929 * 179.97438 * 7 6 5 9 9 S 1.81398 * 109.46987 * 284.95529 * 8 7 6 10 10 C 1.81399 * 102.99825 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46955 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47169 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47600 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99525 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00552 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99613 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00374 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47213 * 60.00191 * 17 15 13 19 19 H 1.48495 * 109.47496 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47126 * 300.00579 * 17 15 13 21 21 C 1.37878 * 119.47666 * 359.95648 * 7 6 5 22 22 C 1.36340 * 127.31696 * 179.97438 * 4 3 2 23 23 O 1.22095 * 120.20019 * 0.02562 * 22 4 3 24 24 S 1.75722 * 125.15339 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46852 * 300.00649 * 1 2 3 27 27 H 1.09002 * 109.46961 * 59.99774 * 1 2 3 28 28 H 1.07997 * 121.69315 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.46908 * 44.95990 * 8 7 6 30 30 H 1.09002 * 109.46803 * 164.95963 * 8 7 6 31 31 H 1.09007 * 109.47120 * 299.99900 * 10 9 8 32 32 H 1.08994 * 109.47400 * 60.00106 * 10 9 8 33 33 H 1.09004 * 109.47055 * 299.99238 * 11 10 9 34 34 H 1.08993 * 109.48069 * 59.99785 * 11 10 9 35 35 H 1.09000 * 109.47175 * 299.99940 * 12 11 10 36 36 H 1.09003 * 109.47103 * 59.99756 * 12 11 10 37 37 H 0.97005 * 119.99828 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.59472 * 180.29292 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.0702 0.0000 4 7 3.6170 0.8667 0.0005 5 6 3.9740 -0.4391 0.0016 6 7 5.2527 -0.8069 0.0017 7 6 6.2361 0.0799 0.0018 8 6 7.6718 -0.3783 0.0025 9 16 8.1130 -0.9819 1.6552 10 6 9.8465 -1.4789 1.4587 11 6 10.3755 -2.0207 2.7882 12 6 11.8374 -2.4405 2.6224 13 6 12.3587 -2.9735 3.9320 14 1 11.7118 -3.0097 4.7962 15 6 13.6611 -3.4160 4.0269 16 7 14.4486 -3.3725 2.9745 17 14 14.3070 -4.0774 5.6500 18 1 13.4981 -5.2523 6.0629 19 1 15.7259 -4.4848 5.4891 20 1 14.2106 -3.0205 6.6887 21 6 5.9362 1.4256 0.0008 22 6 4.5953 1.8163 0.0002 23 8 4.3009 3.0013 -0.0003 24 16 2.5187 -1.4367 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8360 2.0632 -0.0004 29 1 7.7972 -1.1817 -0.7233 30 1 8.3197 0.4567 -0.2642 31 1 9.9179 -2.2549 0.6964 32 1 10.4397 -0.6163 1.1557 33 1 10.3042 -1.2451 3.5508 34 1 9.7823 -2.8835 3.0910 35 1 11.9084 -3.2162 1.8600 36 1 12.4310 -1.5779 2.3195 37 1 15.3650 -3.6835 3.0413 38 1 6.7239 2.1643 -0.0039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902599116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:27 Heat of formation + Delta-G solvation = 1.644958 kcal Electronic energy + Delta-G solvation = -20844.548890 eV Core-core repulsion = 17518.346613 eV Total energy + Delta-G solvation = -3326.202277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54967 -39.13016 -38.88168 -36.34876 -34.58985 -34.03493 -32.65845 -30.62201 -29.39772 -27.92868 -26.98912 -25.37814 -23.70645 -22.35478 -22.03914 -20.03123 -19.65894 -18.60395 -18.37569 -17.99880 -17.18933 -16.65301 -16.53281 -16.20160 -15.76976 -15.32812 -15.29432 -15.03296 -14.64744 -14.43582 -14.41260 -14.24038 -14.18727 -13.63739 -13.47346 -13.39088 -12.99370 -12.72322 -12.70918 -12.39035 -12.32751 -11.64771 -11.63194 -11.47243 -11.34487 -11.22033 -11.05190 -10.92664 -10.54645 -10.42266 -8.87733 -8.68360 -8.20086 -6.30786 -1.18879 -0.61302 0.07459 0.26009 0.33640 0.92106 1.04177 1.41112 1.43833 1.51722 1.55372 2.30426 2.41892 2.67690 3.02554 3.13233 3.41096 3.83840 3.92620 4.04017 4.06921 4.11141 4.21181 4.29389 4.41946 4.60913 4.65530 4.76565 4.77153 4.83884 4.95151 4.98964 5.12576 5.14965 5.21893 5.50115 5.70192 5.83514 6.23661 6.27925 6.36831 6.84498 7.38052 8.91230 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.001990 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.834734 B =14069.249729 C =14612.141284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.167 4.167 3 C 0.016 3.984 4 N -0.454 5.454 5 C 0.278 3.722 6 N -0.523 5.523 7 C 0.238 3.762 8 C -0.038 4.038 9 S -0.266 6.266 10 C -0.067 4.067 11 C -0.082 4.082 12 C 0.031 3.969 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.309 4.309 22 C 0.519 3.481 23 O -0.565 6.565 24 S 0.270 5.730 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.202 0.798 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.054 0.946 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.298 5.942 -10.525 34.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.286 4.286 3 C -0.109 4.109 4 N -0.163 5.163 5 C -0.087 4.087 6 N -0.252 5.252 7 C 0.106 3.894 8 C -0.186 4.186 9 S -0.037 6.037 10 C -0.215 4.215 11 C -0.121 4.121 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.193 1.193 21 C -0.341 4.341 22 C 0.324 3.676 23 O -0.447 6.447 24 S 0.522 5.478 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.219 0.781 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -32.915 4.460 -9.689 34.600 hybrid contribution 1.954 2.047 -0.373 2.854 sum -30.961 6.507 -10.062 33.199 Atomic orbital electron populations 1.20611 0.81679 1.05700 1.05718 1.24527 1.03548 0.93369 1.07169 1.21009 0.79772 1.04035 1.06041 1.45170 1.09037 1.08357 1.53709 1.26829 0.99797 0.85842 0.96186 1.67947 0.95345 1.35921 1.25952 1.20599 0.93501 0.88916 0.86384 1.22277 0.92044 1.06270 0.98029 1.87198 1.16420 1.83748 1.16372 1.23425 0.92080 1.03858 1.02137 1.21170 0.96751 0.99716 0.94435 1.18976 0.90941 0.95032 0.95813 1.21639 0.97260 1.41937 0.97580 0.92403 1.25945 0.97302 0.96064 1.00379 1.70074 1.07403 1.48273 1.31281 0.85518 0.77239 0.79033 0.79379 1.19226 1.20691 1.19328 1.22622 0.94957 0.97623 1.18910 1.17377 0.86029 0.84949 0.79231 1.90948 1.83367 1.16312 1.54063 1.85369 0.84657 1.01904 1.75824 0.88603 0.87911 0.87689 0.78144 0.86188 0.85383 0.89552 0.89426 0.92721 0.92686 0.98286 0.98305 0.92708 0.80939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.03 10.36 71.24 0.74 0.77 16 2 C -0.17 -1.30 6.42 25.75 0.17 -1.13 16 3 C 0.02 0.22 10.31 83.93 0.87 1.09 16 4 N -0.45 -9.75 2.82 -481.03 -1.36 -11.11 16 5 C 0.28 5.78 8.32 179.40 1.49 7.27 16 6 N -0.52 -13.03 10.36 -182.43 -1.89 -14.92 16 7 C 0.24 5.88 6.07 42.39 0.26 6.14 16 8 C -0.04 -0.87 6.33 71.24 0.45 -0.42 16 9 S -0.27 -8.09 21.72 -56.49 -1.23 -9.32 16 10 C -0.07 -2.22 5.94 71.98 0.43 -1.80 16 11 C -0.08 -3.41 5.16 30.59 0.16 -3.26 16 12 C 0.03 1.63 4.97 29.85 0.15 1.78 16 13 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 17 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 C -0.31 -7.84 9.67 22.53 0.22 -7.63 16 22 C 0.52 14.22 7.51 84.34 0.63 14.86 16 23 O -0.57 -18.45 17.46 -5.63 -0.10 -18.55 16 24 S 0.27 3.03 23.36 -56.49 -1.32 1.72 16 25 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.20 2.24 8.00 -2.91 -0.02 2.22 16 29 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.13 2.36 7.98 -2.39 -0.02 2.34 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 38 H 0.17 3.92 8.03 -2.91 -0.02 3.89 16 Total: -1.00 -75.35 356.97 3.74 -71.61 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 1.07 Total: 3.00 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 6.25 Total: -12.89 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.96 Total: -82.11 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.10 Total: -18.55 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -2.55 Total: -7.60 kcal Total: -75.35 3.74 -71.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902599116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.253 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds