Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99981 * 2 1 4 4 H 1.48492 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46769 * 299.99805 * 3 2 1 6 6 H 1.48498 * 109.47071 * 59.99804 * 3 2 1 7 7 C 1.37873 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99746 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00135 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47152 * 179.97438 * 11 10 9 13 13 S 1.81399 * 109.47038 * 179.97438 * 12 11 10 14 14 O 1.42100 * 108.58172 * 294.48947 * 13 12 11 15 15 O 1.42100 * 108.57754 * 65.51586 * 13 12 11 16 16 C 1.81406 * 101.92209 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.46709 * 179.97438 * 16 13 12 18 18 N 1.30114 * 124.94812 * 90.03248 * 17 16 13 19 19 C 1.35783 * 109.64288 * 179.97438 * 18 17 16 20 20 C 1.39749 * 133.60555 * 179.97438 * 19 18 17 21 21 C 1.36592 * 119.88852 * 180.02562 * 20 19 18 22 22 C 1.38786 * 120.67052 * 359.97438 * 21 20 19 23 23 C 1.37852 * 120.44931 * 0.02562 * 22 21 20 24 24 C 1.38836 * 119.68828 * 0.04650 * 23 22 21 25 25 N 1.36034 * 124.95628 * 269.71725 * 17 16 13 26 26 H 0.97005 * 126.34174 * 0.02562 * 25 17 16 27 27 H 0.97006 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47468 * 59.99924 * 9 7 2 29 29 H 1.09004 * 109.46857 * 300.00102 * 9 7 2 30 30 H 1.08999 * 109.46721 * 59.99730 * 11 10 9 31 31 H 1.08998 * 109.46780 * 299.99705 * 11 10 9 32 32 H 1.08999 * 109.47249 * 60.00395 * 12 11 10 33 33 H 1.08998 * 109.47316 * 299.99717 * 12 11 10 34 34 H 1.08993 * 109.47055 * 299.99829 * 16 13 12 35 35 H 1.08998 * 109.46716 * 60.00587 * 16 13 12 36 36 H 1.07999 * 120.05429 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.66643 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.77141 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.15362 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0017 11 6 1.5652 -4.8754 0.0024 12 6 2.6482 -5.9561 0.0030 13 16 1.8681 -7.5938 0.0047 14 8 1.1697 -7.7614 1.2308 15 8 1.1691 -7.7635 -1.2208 16 6 3.3094 -8.6954 0.0044 17 6 2.8456 -10.1292 0.0063 18 7 2.6158 -10.8397 -1.0592 19 6 2.2134 -12.0855 -0.6991 20 6 1.8446 -13.2250 -1.4192 21 6 1.4775 -14.3607 -0.7551 22 6 1.4667 -14.3973 0.6323 23 6 1.8266 -13.2854 1.3633 24 6 2.2012 -12.1216 0.7054 25 7 2.6120 -10.8714 1.1222 26 1 2.7126 -10.5758 2.0407 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5566 0.8903 30 1 0.9454 -4.9830 -0.8877 31 1 0.9448 -4.9818 0.8922 32 1 3.2683 -5.8486 0.8930 33 1 3.2683 -5.8496 -0.8870 34 1 3.9094 -8.5084 -0.8861 35 1 3.9106 -8.5072 0.8939 36 1 1.8498 -13.2076 -2.4991 37 1 1.1927 -15.2391 -1.3152 38 1 1.1743 -15.3032 1.1426 39 1 1.8169 -13.3193 2.4427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905259838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -44.003102 kcal Electronic energy + Delta-G solvation = -23679.194747 eV Core-core repulsion = 19908.260150 eV Total energy + Delta-G solvation = -3770.934597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.58776 -37.81485 -37.19627 -37.05609 -36.20961 -33.60448 -32.98132 -32.24829 -31.43702 -30.36955 -28.30511 -27.17156 -23.46703 -22.83765 -22.54351 -22.32636 -21.43600 -19.14743 -18.32509 -17.73783 -17.36106 -16.67747 -16.41054 -16.29235 -15.86797 -15.29008 -15.24239 -15.11702 -14.73860 -14.41051 -14.32213 -13.92726 -13.58809 -13.55789 -13.10982 -12.40114 -12.37849 -12.24236 -12.19453 -12.17198 -11.93941 -11.48765 -11.34556 -11.19826 -11.02118 -10.93382 -10.86379 -10.71495 -10.41018 -10.14072 -9.20381 -8.99616 -8.79146 -8.53617 -8.31613 -6.17652 -4.20565 -0.50804 0.56575 1.12798 2.26539 2.32765 2.45428 3.13161 3.25247 3.31734 3.37454 3.49156 3.56278 3.72713 4.06204 4.26980 4.32853 4.49524 4.53936 4.64739 4.78798 4.82722 4.96975 5.00915 5.05725 5.18854 5.26586 5.34175 5.45626 5.65786 5.78231 5.89098 5.96138 6.10389 6.13001 6.45295 6.81992 6.97216 7.31173 7.38378 7.70054 8.03382 8.38560 8.90774 9.44333 10.93773 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.048507 B = 0.001977 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.096595 B =14157.200995 C =14180.549448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.190 3.810 10 O -0.386 6.386 11 C 0.074 3.926 12 C -0.602 4.602 13 S 2.422 3.578 14 O -0.928 6.928 15 O -0.910 6.910 16 C -0.544 4.544 17 C 0.282 3.718 18 N -0.462 5.462 19 C 0.044 3.956 20 C -0.057 4.057 21 C -0.129 4.129 22 C -0.096 4.096 23 C -0.112 4.112 24 C 0.055 3.945 25 N -0.589 5.589 26 H 0.428 0.572 27 H 0.265 0.735 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.700 -28.633 2.849 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.115 3.885 10 O -0.306 6.306 11 C -0.005 4.005 12 C -0.732 4.732 13 S 2.600 3.400 14 O -0.925 6.925 15 O -0.907 6.907 16 C -0.670 4.670 17 C 0.015 3.985 18 N -0.183 5.183 19 C -0.075 4.075 20 C -0.077 4.077 21 C -0.149 4.149 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.055 4.055 25 N -0.201 5.201 26 H 0.268 0.732 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.173 0.827 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.959 -28.461 1.959 29.144 hybrid contribution 1.044 1.038 1.352 1.998 sum 7.002 -27.423 3.310 28.496 Atomic orbital electron populations 1.69971 1.06120 1.27266 1.50100 1.24972 0.95029 0.99543 0.95000 0.86241 0.79914 0.82383 0.77700 1.19483 1.20750 1.20777 1.21049 0.94116 0.89103 1.51379 0.91364 1.20363 0.88865 0.83195 0.96036 1.87889 1.35340 1.12057 1.95309 1.21762 0.91888 0.85644 1.01178 1.30359 1.12532 1.17536 1.12818 1.08334 0.77341 0.78300 0.76011 1.93599 1.67921 1.85177 1.45787 1.93640 1.67437 1.84533 1.45061 1.29156 1.22690 1.00846 1.14344 1.21796 1.01084 0.93588 0.82045 1.70429 1.18206 1.02743 1.26888 1.19111 1.04772 0.93188 0.90438 1.20102 0.97520 0.89866 1.00201 1.20703 1.01775 0.98047 0.94394 1.20956 0.99059 0.97523 0.94053 1.20010 1.03202 0.90329 0.99752 1.18925 1.03963 0.87195 0.95448 1.42968 1.56932 1.10348 1.09879 0.73197 0.92533 0.97093 0.97165 0.92471 0.92611 0.84137 0.83853 0.81109 0.82739 0.84893 0.85028 0.84972 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -15.03 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 9 C 0.19 5.14 5.69 36.01 0.20 5.34 16 10 O -0.39 -8.99 10.33 -35.23 -0.36 -9.35 16 11 C 0.07 1.33 5.95 37.15 0.22 1.55 16 12 C -0.60 -7.11 6.17 37.15 0.23 -6.88 16 13 S 2.42 28.09 4.70 -107.50 -0.51 27.58 16 14 O -0.93 -13.05 18.10 -57.83 -1.05 -14.10 16 15 O -0.91 -14.27 18.10 -57.83 -1.05 -15.32 16 16 C -0.54 -4.12 6.43 36.01 0.23 -3.89 16 17 C 0.28 3.15 7.34 -154.82 -1.14 2.01 16 18 N -0.46 -6.30 11.27 -8.23 -0.09 -6.39 16 19 C 0.04 0.54 7.23 -84.70 -0.61 -0.07 16 20 C -0.06 -0.56 10.05 -39.61 -0.40 -0.96 16 21 C -0.13 -0.94 9.96 -39.97 -0.40 -1.34 16 22 C -0.10 -0.65 10.03 -39.52 -0.40 -1.05 16 23 C -0.11 -0.89 10.07 -39.50 -0.40 -1.29 16 24 C 0.06 0.58 7.30 -83.99 -0.61 -0.03 16 25 N -0.59 -5.59 6.23 -8.00 -0.05 -5.64 16 26 H 0.43 2.62 8.96 -40.82 -0.37 2.26 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.14 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.17 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.15 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -40.00 356.44 -10.49 -50.49 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -4.98 Total: -2.86 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -3.49 Total: -20.43 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.59 Total: -37.87 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -2.46 Total: -38.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 28.09 SS G_CDS: -0.51 Total: 27.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -40.00 -10.49 -50.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905259838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.488 kcal (2) G-P(sol) polarization free energy of solvation -40.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds