Wall clock time and date at job start Tue Mar 31 2020 14:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99981 * 2 1 4 4 H 1.48492 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46769 * 299.99805 * 3 2 1 6 6 H 1.48498 * 109.47071 * 59.99804 * 3 2 1 7 7 C 1.37873 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99746 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00135 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47152 * 179.97438 * 11 10 9 13 13 S 1.81399 * 109.47038 * 179.97438 * 12 11 10 14 14 O 1.42100 * 108.58172 * 294.48947 * 13 12 11 15 15 O 1.42100 * 108.57754 * 65.51586 * 13 12 11 16 16 C 1.81406 * 101.92209 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.46709 * 179.97438 * 16 13 12 18 18 N 1.30114 * 124.94812 * 90.03248 * 17 16 13 19 19 C 1.35783 * 109.64288 * 179.97438 * 18 17 16 20 20 C 1.39749 * 133.60555 * 179.97438 * 19 18 17 21 21 C 1.36592 * 119.88852 * 180.02562 * 20 19 18 22 22 C 1.38786 * 120.67052 * 359.97438 * 21 20 19 23 23 C 1.37852 * 120.44931 * 0.02562 * 22 21 20 24 24 C 1.38836 * 119.68828 * 0.04650 * 23 22 21 25 25 N 1.36034 * 124.95628 * 269.71725 * 17 16 13 26 26 H 0.97005 * 126.34174 * 0.02562 * 25 17 16 27 27 H 0.97006 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47468 * 59.99924 * 9 7 2 29 29 H 1.09004 * 109.46857 * 300.00102 * 9 7 2 30 30 H 1.08999 * 109.46721 * 59.99730 * 11 10 9 31 31 H 1.08998 * 109.46780 * 299.99705 * 11 10 9 32 32 H 1.08999 * 109.47249 * 60.00395 * 12 11 10 33 33 H 1.08998 * 109.47316 * 299.99717 * 12 11 10 34 34 H 1.08993 * 109.47055 * 299.99829 * 16 13 12 35 35 H 1.08998 * 109.46716 * 60.00587 * 16 13 12 36 36 H 1.07999 * 120.05429 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.66643 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.77141 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.15362 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0017 11 6 1.5652 -4.8754 0.0024 12 6 2.6482 -5.9561 0.0030 13 16 1.8681 -7.5938 0.0047 14 8 1.1697 -7.7614 1.2308 15 8 1.1691 -7.7635 -1.2208 16 6 3.3094 -8.6954 0.0044 17 6 2.8456 -10.1292 0.0063 18 7 2.6158 -10.8397 -1.0592 19 6 2.2134 -12.0855 -0.6991 20 6 1.8446 -13.2250 -1.4192 21 6 1.4775 -14.3607 -0.7551 22 6 1.4667 -14.3973 0.6323 23 6 1.8266 -13.2854 1.3633 24 6 2.2012 -12.1216 0.7054 25 7 2.6120 -10.8714 1.1222 26 1 2.7126 -10.5758 2.0407 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5566 0.8903 30 1 0.9454 -4.9830 -0.8877 31 1 0.9448 -4.9818 0.8922 32 1 3.2683 -5.8486 0.8930 33 1 3.2683 -5.8496 -0.8870 34 1 3.9094 -8.5084 -0.8861 35 1 3.9106 -8.5072 0.8939 36 1 1.8498 -13.2076 -2.4991 37 1 1.1927 -15.2391 -1.3152 38 1 1.1743 -15.3032 1.1426 39 1 1.8169 -13.3193 2.4427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905259838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:13 Heat of formation + Delta-G solvation = -75.525400 kcal Electronic energy + Delta-G solvation = -23680.561656 eV Core-core repulsion = 19908.260150 eV Total energy + Delta-G solvation = -3772.301506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.29700 -38.82720 -38.43007 -38.23254 -37.25317 -35.06697 -34.33707 -32.98021 -32.78263 -31.00739 -29.32443 -28.91563 -24.90506 -24.33475 -23.50854 -23.21710 -22.22161 -20.08725 -19.03017 -18.70206 -18.41185 -18.38717 -17.51717 -17.43277 -16.98843 -16.64008 -16.50588 -16.15319 -16.02886 -15.37680 -15.24666 -14.93224 -14.63010 -14.59845 -14.12359 -14.01615 -13.32005 -13.24198 -13.09603 -13.02007 -12.99029 -12.89791 -12.66898 -12.57735 -12.55986 -12.26743 -12.09357 -11.96308 -11.72459 -11.31135 -11.16988 -10.96224 -10.37709 -9.45812 -9.22302 -8.35092 -6.48658 -1.43414 -0.09556 0.47960 1.40477 1.42184 1.49549 1.56769 1.60374 1.68912 2.26665 2.36836 2.76295 2.83275 2.90951 2.99116 3.14404 3.40847 3.69999 3.70448 3.83432 3.94959 4.13397 4.21498 4.30386 4.33109 4.43990 4.44346 4.46859 4.66913 4.80385 4.85838 5.06757 5.08891 5.33450 5.46379 5.51019 5.53434 5.88233 5.88659 6.22291 6.38802 6.63756 6.71975 7.22966 8.77589 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.048507 B = 0.001977 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.096595 B =14157.200995 C =14180.549448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.198 3.802 10 O -0.393 6.393 11 C 0.052 3.948 12 C -0.595 4.595 13 S 2.427 3.573 14 O -0.961 6.961 15 O -0.963 6.963 16 C -0.517 4.517 17 C 0.264 3.736 18 N -0.503 5.503 19 C 0.002 3.998 20 C -0.084 4.084 21 C -0.121 4.121 22 C -0.090 4.090 23 C -0.118 4.118 24 C 0.039 3.961 25 N -0.581 5.581 26 H 0.442 0.558 27 H 0.272 0.728 28 H -0.010 1.010 29 H -0.008 1.008 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.199 0.801 35 H 0.208 0.792 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 -29.777 4.066 31.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.087 0.913 9 C 0.123 3.877 10 O -0.313 6.313 11 C -0.026 4.026 12 C -0.724 4.724 13 S 2.611 3.389 14 O -0.958 6.958 15 O -0.960 6.960 16 C -0.647 4.647 17 C -0.004 4.004 18 N -0.225 5.225 19 C -0.116 4.116 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.072 4.072 25 N -0.196 5.196 26 H 0.284 0.716 27 H 0.081 0.919 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.193 0.807 33 H 0.187 0.813 34 H 0.216 0.784 35 H 0.225 0.775 36 H 0.152 0.848 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.998 -29.592 3.195 30.820 hybrid contribution 0.366 1.148 0.982 1.555 sum 8.365 -28.444 4.177 29.941 Atomic orbital electron populations 1.70086 1.07908 1.28770 1.50268 1.26049 0.96016 1.03679 0.93825 0.85054 0.78717 0.76906 0.78206 1.18427 1.19801 1.19689 1.21408 0.94369 0.90385 1.52524 0.91317 1.20021 0.88917 0.84619 0.94122 1.87823 1.34917 1.13284 1.95292 1.22119 0.94514 0.84911 1.01094 1.30307 1.11164 1.15026 1.15888 1.07846 0.78354 0.78445 0.74270 1.93552 1.70169 1.85611 1.46445 1.93579 1.70314 1.85282 1.46839 1.28986 1.20007 0.97177 1.18525 1.22247 1.01325 0.94652 0.82171 1.70349 1.19560 1.03934 1.28665 1.19597 1.06391 0.93609 0.91994 1.20372 0.98929 0.90414 1.00611 1.21113 0.99894 0.97963 0.95116 1.21455 0.97272 0.98352 0.93904 1.20446 1.02537 0.89660 1.01248 1.19305 1.04466 0.88270 0.95121 1.42956 1.56320 1.09970 1.10306 0.71563 0.91949 0.99213 0.99025 0.93048 0.92588 0.80748 0.81338 0.78367 0.77457 0.84850 0.82116 0.81437 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.99 43.77 29.54 68.60 2.03 45.80 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -32.35 9.43 25.60 0.24 -32.11 16 8 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 9 C 0.20 11.17 5.69 71.24 0.41 11.57 16 10 O -0.39 -18.63 10.33 -148.98 -1.54 -20.17 16 11 C 0.05 1.89 5.95 71.98 0.43 2.32 16 12 C -0.59 -13.12 6.17 71.98 0.44 -12.68 16 13 S 2.43 55.09 4.70 -56.49 -0.27 54.82 16 14 O -0.96 -27.07 18.10 -127.37 -2.31 -29.38 16 15 O -0.96 -31.46 18.10 -127.37 -2.30 -33.76 16 16 C -0.52 -6.49 6.43 71.24 0.46 -6.03 16 17 C 0.26 5.62 7.34 137.92 1.01 6.64 16 18 N -0.50 -13.92 11.27 -179.96 -2.03 -15.95 16 19 C 0.00 0.06 7.23 39.45 0.29 0.35 16 20 C -0.08 -1.65 10.05 22.25 0.22 -1.42 16 21 C -0.12 -1.55 9.96 22.02 0.22 -1.33 16 22 C -0.09 -0.97 10.03 22.31 0.22 -0.75 16 23 C -0.12 -1.63 10.07 22.32 0.22 -1.40 16 24 C 0.04 0.80 7.30 38.86 0.28 1.08 16 25 N -0.58 -10.36 6.23 -179.23 -1.12 -11.47 16 26 H 0.44 4.64 8.96 -92.70 -0.83 3.80 16 27 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 29 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.17 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.17 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.20 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.21 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -91.88 356.44 -2.09 -93.97 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.25 Total: 5.06 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 4.91 Total: -33.13 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.86 Total: -83.21 kcal Atomic # 8 Polarization: -77.16 SS G_CDS: -6.15 Total: -83.31 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 55.09 SS G_CDS: -0.27 Total: 54.82 kcal Total: -91.88 -2.09 -93.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905259838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.442 kcal (2) G-P(sol) polarization free energy of solvation -91.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds