Wall clock time and date at job start Tue Mar 31 2020 14:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46775 * 269.99426 * 3 2 1 5 5 H 1.48496 * 109.47254 * 29.99505 * 3 2 1 6 6 H 1.48502 * 109.47195 * 150.00047 * 3 2 1 7 7 C 1.37883 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00582 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99311 * 180.02562 * 7 2 1 10 10 S 1.81403 * 109.46503 * 180.02562 * 9 7 2 11 11 O 1.42097 * 108.57971 * 65.51691 * 10 9 7 12 12 O 1.42099 * 108.57976 * 294.48317 * 10 9 7 13 13 C 1.81408 * 101.91685 * 179.97438 * 10 9 7 14 14 C 1.53000 * 109.46799 * 179.97438 * 13 10 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 10 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 17 17 C 1.36382 * 126.36233 * 90.02367 * 16 15 14 18 18 O 1.35283 * 125.03616 * 359.97438 * 17 16 15 19 19 N 1.30757 * 109.93507 * 179.97438 * 17 16 15 20 20 C 1.35904 * 109.62521 * 0.02562 * 19 17 16 21 21 C 1.39698 * 133.44775 * 180.02562 * 20 19 17 22 22 C 1.37668 * 119.77918 * 179.97438 * 21 20 19 23 23 C 1.38720 * 120.50101 * 359.97438 * 22 21 20 24 24 C 1.37940 * 120.43435 * 359.97438 * 23 22 21 25 25 C 1.38447 * 126.36644 * 269.71635 * 16 15 14 26 26 H 0.96996 * 119.99926 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47024 * 60.00015 * 9 7 2 28 28 H 1.08995 * 109.47031 * 299.99555 * 9 7 2 29 29 H 1.09001 * 109.46823 * 60.00081 * 13 10 9 30 30 H 1.08992 * 109.47429 * 300.00117 * 13 10 9 31 31 H 1.09002 * 109.47398 * 300.00340 * 14 13 10 32 32 H 1.09001 * 109.47194 * 60.00520 * 14 13 10 33 33 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 35 35 H 0.96701 * 113.99304 * 89.99958 * 18 17 16 36 36 H 1.08002 * 120.11011 * 359.94886 * 21 20 19 37 37 H 1.08006 * 119.75327 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.78308 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.07594 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.7412 -3.5170 -1.2251 12 8 3.7403 -3.5176 1.2265 13 6 5.9145 -2.6661 0.0009 14 6 6.6095 -4.0291 0.0014 15 6 8.1262 -3.8281 0.0021 16 7 8.7918 -5.1332 0.0019 17 6 9.1600 -5.8530 -1.0964 18 8 8.9645 -5.4682 -2.3785 19 7 9.7301 -6.9702 -0.7267 20 6 9.7634 -7.0384 0.6302 21 6 10.2479 -7.9883 1.5327 22 6 10.1332 -7.7660 2.8865 23 6 9.5406 -6.6053 3.3617 24 6 9.0581 -5.6571 2.4838 25 6 9.1693 -5.8623 1.1167 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6805 -0.8888 29 1 6.2071 -2.1090 0.8910 30 1 6.2071 -2.1089 -0.8889 31 1 6.3168 -4.5859 0.8916 32 1 6.3169 -4.5865 -0.8884 33 1 8.4193 -3.2711 -0.8879 34 1 8.4186 -3.2709 0.8920 35 1 9.6945 -4.9547 -2.7506 36 1 10.7104 -8.8942 1.1696 37 1 10.5083 -8.5005 3.5839 38 1 9.4563 -6.4430 4.4261 39 1 8.5973 -4.7558 2.8601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:23 Heat of formation + Delta-G solvation = -36.078823 kcal Electronic energy + Delta-G solvation = -24400.406475 eV Core-core repulsion = 20629.815500 eV Total energy + Delta-G solvation = -3770.590974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45503 -38.48546 -36.87973 -36.22965 -35.91771 -35.25378 -33.30055 -32.92045 -30.46510 -29.90390 -29.12496 -27.07903 -23.53819 -23.31210 -22.55774 -22.19773 -20.86216 -18.96048 -18.22958 -17.78993 -17.50895 -17.06368 -16.52412 -15.98908 -15.77753 -15.38118 -15.06350 -14.86341 -14.56324 -14.29169 -14.17728 -14.10350 -13.37054 -12.86519 -12.82092 -12.75777 -12.58649 -12.43725 -12.05787 -11.75202 -11.66103 -11.60511 -11.36918 -11.29960 -11.25449 -10.92696 -10.84185 -10.48240 -10.25324 -10.19546 -9.88060 -9.41094 -8.88213 -8.58789 -8.34750 -6.35200 -4.44032 0.59242 0.65895 1.21818 1.94511 2.31054 3.08684 3.13635 3.17940 3.33319 3.56452 3.59250 4.03335 4.15969 4.18402 4.23152 4.46691 4.54945 4.68174 4.69181 4.75226 4.86260 4.98515 5.06034 5.07390 5.15394 5.26017 5.37064 5.42762 5.55697 5.74247 5.82518 6.05485 6.09182 6.20483 6.21205 6.24470 6.30778 6.56743 7.13698 7.20161 7.49626 7.98392 8.59241 9.18668 10.76068 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.002752 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.347417 B =10172.362405 C =10612.265458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.087 3.913 3 Si 0.883 3.117 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.088 0.912 9 C -0.455 4.455 10 S 2.416 3.584 11 O -0.946 6.946 12 O -0.947 6.947 13 C -0.634 4.634 14 C -0.126 4.126 15 C 0.118 3.882 16 N -0.492 5.492 17 C 0.454 3.546 18 O -0.438 6.438 19 N -0.490 5.490 20 C 0.057 3.943 21 C -0.067 4.067 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.106 4.106 25 C 0.055 3.945 26 H 0.272 0.728 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.408 0.592 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.408 -6.760 3.155 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.120 4.120 3 Si 0.709 3.291 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.106 0.894 9 C -0.588 4.588 10 S 2.599 3.401 11 O -0.943 6.943 12 O -0.944 6.944 13 C -0.759 4.759 14 C -0.165 4.165 15 C -0.005 4.005 16 N -0.194 5.194 17 C 0.151 3.849 18 O -0.240 6.240 19 N -0.221 5.221 20 C -0.061 4.061 21 C -0.086 4.086 22 C -0.145 4.145 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.053 4.053 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 23.524 -8.225 2.524 25.048 hybrid contribution 0.820 2.767 0.177 2.892 sum 24.344 -5.458 2.701 25.094 Atomic orbital electron populations 1.69865 1.06291 1.27791 1.47559 1.24908 0.94764 0.99118 0.93170 0.86732 0.80334 0.83081 0.78978 1.19600 1.20569 1.18835 1.20110 0.84993 0.96369 1.55465 0.89371 1.27992 1.08657 1.16595 1.05595 1.08260 0.75943 0.80650 0.75216 1.93512 1.79799 1.75269 1.45734 1.93506 1.79804 1.75254 1.45821 1.30549 1.29485 1.04650 1.11205 1.21631 0.94267 0.95395 1.05231 1.21871 0.92166 0.81427 1.05025 1.45861 1.49817 1.18493 1.05227 1.20425 0.95536 0.87555 0.81348 1.84873 1.46455 1.74277 1.18363 1.70690 1.22242 1.17604 1.11573 1.18816 1.03086 0.94990 0.89250 1.20263 0.99253 0.97711 0.91392 1.20919 1.00980 0.98039 0.94606 1.20927 0.98255 0.93490 0.99411 1.20014 1.02993 1.01087 0.88595 1.18702 1.03128 0.94445 0.89005 0.91814 0.89751 0.90176 0.85114 0.85034 0.89571 0.89298 0.88379 0.88449 0.73381 0.85151 0.85123 0.84998 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.96 55.43 0.77 -25.13 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.31 16 3 Si 0.88 19.72 27.47 -169.99 -4.67 15.05 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 7 C -0.53 -14.57 9.68 -34.43 -0.33 -14.91 16 8 H 0.09 2.66 7.96 -52.49 -0.42 2.24 16 9 C -0.45 -9.49 4.63 36.01 0.17 -9.32 16 10 S 2.42 45.24 4.64 -107.50 -0.50 44.74 16 11 O -0.95 -20.98 18.10 -57.83 -1.05 -22.02 16 12 O -0.95 -20.79 18.10 -57.83 -1.05 -21.83 16 13 C -0.63 -7.37 5.81 37.16 0.22 -7.15 16 14 C -0.13 -1.50 5.55 -26.73 -0.15 -1.65 16 15 C 0.12 1.05 6.09 -4.04 -0.02 1.03 16 16 N -0.49 -5.49 2.82 -115.97 -0.33 -5.82 16 17 C 0.45 5.47 8.98 -88.93 -0.80 4.67 16 18 O -0.44 -4.16 13.52 -17.54 -0.24 -4.40 16 19 N -0.49 -6.78 11.31 -12.24 -0.14 -6.91 16 20 C 0.06 0.72 7.22 -84.68 -0.61 0.11 16 21 C -0.07 -0.68 10.10 -39.24 -0.40 -1.07 16 22 C -0.13 -1.02 10.01 -39.61 -0.40 -1.42 16 23 C -0.10 -0.84 10.03 -39.51 -0.40 -1.23 16 24 C -0.11 -1.04 10.04 -39.52 -0.40 -1.43 16 25 C 0.06 0.65 6.87 -83.87 -0.58 0.07 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 27 H 0.08 1.58 7.20 -51.93 -0.37 1.20 16 28 H 0.08 1.47 7.57 -51.93 -0.39 1.08 16 29 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.10 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 1.46 9.06 45.56 0.41 1.88 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -38.77 352.30 -9.84 -48.61 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.17 Total: 2.40 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -3.79 Total: -29.99 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.31 Total: -37.86 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -2.33 Total: -48.25 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Atomic # 16 Polarization: 45.24 SS G_CDS: -0.50 Total: 44.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.77 -9.84 -48.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.528 kcal (2) G-P(sol) polarization free energy of solvation -38.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds