Wall clock time and date at job start Tue Mar 31 2020 14:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46775 * 269.99426 * 3 2 1 5 5 H 1.48496 * 109.47254 * 29.99505 * 3 2 1 6 6 H 1.48502 * 109.47195 * 150.00047 * 3 2 1 7 7 C 1.37883 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00582 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99311 * 180.02562 * 7 2 1 10 10 S 1.81403 * 109.46503 * 180.02562 * 9 7 2 11 11 O 1.42097 * 108.57971 * 65.51691 * 10 9 7 12 12 O 1.42099 * 108.57976 * 294.48317 * 10 9 7 13 13 C 1.81408 * 101.91685 * 179.97438 * 10 9 7 14 14 C 1.53000 * 109.46799 * 179.97438 * 13 10 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 10 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 17 17 C 1.36382 * 126.36233 * 90.02367 * 16 15 14 18 18 O 1.35283 * 125.03616 * 359.97438 * 17 16 15 19 19 N 1.30757 * 109.93507 * 179.97438 * 17 16 15 20 20 C 1.35904 * 109.62521 * 0.02562 * 19 17 16 21 21 C 1.39698 * 133.44775 * 180.02562 * 20 19 17 22 22 C 1.37668 * 119.77918 * 179.97438 * 21 20 19 23 23 C 1.38720 * 120.50101 * 359.97438 * 22 21 20 24 24 C 1.37940 * 120.43435 * 359.97438 * 23 22 21 25 25 C 1.38447 * 126.36644 * 269.71635 * 16 15 14 26 26 H 0.96996 * 119.99926 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47024 * 60.00015 * 9 7 2 28 28 H 1.08995 * 109.47031 * 299.99555 * 9 7 2 29 29 H 1.09001 * 109.46823 * 60.00081 * 13 10 9 30 30 H 1.08992 * 109.47429 * 300.00117 * 13 10 9 31 31 H 1.09002 * 109.47398 * 300.00340 * 14 13 10 32 32 H 1.09001 * 109.47194 * 60.00520 * 14 13 10 33 33 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 35 35 H 0.96701 * 113.99304 * 89.99958 * 18 17 16 36 36 H 1.08002 * 120.11011 * 359.94886 * 21 20 19 37 37 H 1.08006 * 119.75327 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.78308 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.07594 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.7412 -3.5170 -1.2251 12 8 3.7403 -3.5176 1.2265 13 6 5.9145 -2.6661 0.0009 14 6 6.6095 -4.0291 0.0014 15 6 8.1262 -3.8281 0.0021 16 7 8.7918 -5.1332 0.0019 17 6 9.1600 -5.8530 -1.0964 18 8 8.9645 -5.4682 -2.3785 19 7 9.7301 -6.9702 -0.7267 20 6 9.7634 -7.0384 0.6302 21 6 10.2479 -7.9883 1.5327 22 6 10.1332 -7.7660 2.8865 23 6 9.5406 -6.6053 3.3617 24 6 9.0581 -5.6571 2.4838 25 6 9.1693 -5.8623 1.1167 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6805 -0.8888 29 1 6.2071 -2.1090 0.8910 30 1 6.2071 -2.1089 -0.8889 31 1 6.3168 -4.5859 0.8916 32 1 6.3169 -4.5865 -0.8884 33 1 8.4193 -3.2711 -0.8879 34 1 8.4186 -3.2709 0.8920 35 1 9.6945 -4.9547 -2.7506 36 1 10.7104 -8.8942 1.1696 37 1 10.5083 -8.5005 3.5839 38 1 9.4563 -6.4430 4.4261 39 1 8.5973 -4.7558 2.8601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:22 Heat of formation + Delta-G solvation = -69.626118 kcal Electronic energy + Delta-G solvation = -24401.861195 eV Core-core repulsion = 20629.815500 eV Total energy + Delta-G solvation = -3772.045694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.20721 -39.17520 -37.82861 -37.58644 -36.92839 -36.62205 -35.28821 -33.78838 -31.77009 -31.16701 -29.84471 -27.94047 -25.20612 -24.03372 -23.53142 -23.10185 -21.59775 -19.83389 -19.56788 -19.30181 -18.48828 -18.05005 -17.44317 -17.19313 -17.10828 -16.85096 -16.00040 -15.94567 -15.76282 -15.27397 -15.01503 -14.86608 -14.68417 -14.23160 -14.19231 -13.56186 -13.53497 -13.47636 -13.30367 -12.98072 -12.90389 -12.69953 -12.58470 -12.46160 -12.31323 -12.22744 -12.09771 -11.83272 -11.77947 -11.41546 -11.03032 -10.95568 -10.89243 -9.31409 -9.09024 -8.41543 -6.58259 -0.78812 -0.10210 0.50934 1.23149 1.35537 1.40633 1.51431 1.55143 2.15498 2.31109 2.64863 2.87022 2.89997 2.90681 3.27092 3.35381 3.55787 3.66607 3.77575 3.96844 4.05283 4.16339 4.29386 4.41649 4.43506 4.45244 4.48474 4.54930 4.64419 4.74216 4.82584 4.89295 5.17103 5.29204 5.38258 5.53248 5.58463 5.71701 5.85400 5.93078 6.48271 6.58825 6.70750 7.09087 8.74754 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.002752 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.347417 B =10172.362405 C =10612.265458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.216 1.216 7 C -0.556 4.556 8 H 0.027 0.973 9 C -0.472 4.472 10 S 2.403 3.597 11 O -0.999 6.999 12 O -0.996 6.996 13 C -0.582 4.582 14 C -0.136 4.136 15 C 0.118 3.882 16 N -0.491 5.491 17 C 0.448 3.552 18 O -0.445 6.445 19 N -0.530 5.530 20 C 0.023 3.977 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.099 4.099 24 C -0.117 4.117 25 C 0.037 3.963 26 H 0.275 0.725 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.431 0.569 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.711 -4.200 4.312 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.138 1.138 7 C -0.594 4.594 8 H 0.045 0.955 9 C -0.604 4.604 10 S 2.594 3.406 11 O -0.996 6.996 12 O -0.993 6.993 13 C -0.715 4.715 14 C -0.175 4.175 15 C -0.004 4.004 16 N -0.193 5.193 17 C 0.145 3.855 18 O -0.250 6.250 19 N -0.262 5.262 20 C -0.095 4.095 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.137 4.137 25 C -0.070 4.070 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.197 0.803 30 H 0.195 0.805 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.293 0.707 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 27.762 -5.675 3.676 28.574 hybrid contribution -0.464 1.801 -0.168 1.867 sum 27.298 -3.874 3.509 27.794 Atomic orbital electron populations 1.70062 1.08978 1.29241 1.49719 1.26238 0.95794 1.04412 0.92266 0.85546 0.80433 0.75998 0.80167 1.18139 1.20913 1.13822 1.20445 0.89144 0.94383 1.55401 0.95460 1.28058 1.04132 1.19671 1.08517 1.08047 0.79820 0.79346 0.73388 1.93446 1.83103 1.75900 1.47174 1.93442 1.83041 1.75809 1.47052 1.30056 1.19514 1.05878 1.16035 1.21717 0.96924 0.95011 1.03854 1.22079 0.89221 0.80919 1.08153 1.45910 1.49704 1.19066 1.04648 1.20541 0.95219 0.87519 0.82207 1.84831 1.47944 1.74802 1.17441 1.70600 1.23983 1.18993 1.12644 1.19251 1.04493 0.96441 0.89272 1.20549 0.99947 0.97880 0.92217 1.21311 0.99729 0.98599 0.94163 1.21376 0.96832 0.92830 1.00805 1.20369 1.03189 1.02273 0.87893 1.19027 1.03620 0.94450 0.89951 0.91648 0.86350 0.86672 0.80298 0.80476 0.90912 0.91324 0.85256 0.85411 0.70655 0.84621 0.82190 0.82019 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.96 21.45 0.30 -57.98 16 2 C 0.01 0.72 5.47 84.66 0.46 1.18 16 3 Si 0.96 38.98 27.47 68.60 1.88 40.86 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.22 -7.10 6.54 99.48 0.65 -6.44 16 7 C -0.56 -31.57 9.68 25.60 0.25 -31.32 16 8 H 0.03 1.80 7.96 -2.91 -0.02 1.77 16 9 C -0.47 -18.69 4.63 71.24 0.33 -18.36 16 10 S 2.40 88.47 4.64 -56.49 -0.26 88.21 16 11 O -1.00 -45.76 18.10 -127.37 -2.30 -48.06 16 12 O -1.00 -44.85 18.10 -127.37 -2.31 -47.16 16 13 C -0.58 -10.42 5.81 71.98 0.42 -10.00 16 14 C -0.14 -2.76 5.55 30.59 0.17 -2.59 16 15 C 0.12 1.55 6.09 86.38 0.53 2.08 16 16 N -0.49 -9.85 2.82 -631.71 -1.78 -11.63 16 17 C 0.45 10.38 8.98 179.76 1.61 12.00 16 18 O -0.45 -7.80 13.52 -85.68 -1.16 -8.96 16 19 N -0.53 -14.79 11.31 -306.47 -3.47 -18.26 16 20 C 0.02 0.58 7.22 39.41 0.28 0.86 16 21 C -0.09 -1.71 10.10 22.49 0.23 -1.48 16 22 C -0.12 -1.67 10.01 22.25 0.22 -1.45 16 23 C -0.10 -1.34 10.03 22.31 0.22 -1.12 16 24 C -0.12 -1.97 10.04 22.31 0.22 -1.74 16 25 C 0.04 0.82 6.87 38.75 0.27 1.09 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.12 3.88 7.20 -2.39 -0.02 3.86 16 28 H 0.12 3.76 7.57 -2.39 -0.02 3.74 16 29 H 0.18 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.18 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.13 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.43 2.22 9.06 -74.06 -0.67 1.55 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -95.98 352.30 -3.52 -99.51 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.35 Total: 14.33 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 5.22 Total: -50.85 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -4.95 Total: -87.87 kcal Atomic # 8 Polarization: -98.41 SS G_CDS: -5.77 Total: -104.18 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.88 Total: 40.86 kcal Atomic # 16 Polarization: 88.47 SS G_CDS: -0.26 Total: 88.21 kcal Total: -95.98 -3.52 -99.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.879 kcal (2) G-P(sol) polarization free energy of solvation -95.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds