Wall clock time and date at job start Tue Mar 31 2020 14:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99782 * 2 1 4 4 H 1.48500 * 109.46741 * 269.99846 * 3 2 1 5 5 H 1.48494 * 109.47018 * 29.99738 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99742 * 3 2 1 7 7 C 1.37872 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00052 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00297 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47327 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47416 * 179.97438 * 10 9 7 12 12 C 1.34754 * 117.00133 * 179.97438 * 11 10 9 13 13 O 1.21522 * 119.99979 * 0.02562 * 12 11 10 14 14 C 1.47321 * 119.99969 * 180.02562 * 12 11 10 15 15 C 1.39902 * 120.21268 * 270.00109 * 14 12 11 16 16 Cl 1.73603 * 120.06223 * 0.02562 * 15 14 12 17 17 C 1.37941 * 119.87166 * 180.02562 * 15 14 12 18 18 C 1.38494 * 120.28888 * 359.97438 * 17 15 14 19 19 C 1.38098 * 120.42911 * 0.02562 * 18 17 15 20 20 C 1.38665 * 120.12509 * 0.27898 * 19 18 17 21 21 O 1.35643 * 120.14682 * 179.69874 * 20 19 18 22 22 C 1.42900 * 116.99797 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46523 * 180.02562 * 22 21 20 24 24 C 1.53002 * 117.49380 * 243.61616 * 23 22 21 25 25 C 1.52998 * 60.00111 * 252.51335 * 24 23 22 26 26 H 0.96998 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47500 * 59.99505 * 9 7 2 28 28 H 1.09002 * 109.46749 * 299.99796 * 9 7 2 29 29 H 1.09000 * 109.47653 * 59.99168 * 10 9 7 30 30 H 1.09002 * 109.47048 * 299.99623 * 10 9 7 31 31 H 1.07995 * 119.85654 * 180.02562 * 17 15 14 32 32 H 1.08007 * 119.78571 * 180.02562 * 18 17 15 33 33 H 1.08002 * 119.93465 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.46938 * 299.99688 * 22 21 20 35 35 H 1.08998 * 109.47443 * 59.99888 * 22 21 20 36 36 H 1.08993 * 115.55387 * 29.32907 * 23 22 21 37 37 H 1.09002 * 117.50109 * 0.02562 * 24 23 22 38 38 H 1.09004 * 117.49716 * 145.02345 * 24 23 22 39 39 H 1.08998 * 117.50186 * 252.50936 * 25 24 23 40 40 H 1.09003 * 117.49474 * 107.48942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 8 5.4737 -2.6363 0.0022 12 6 6.0855 -3.8369 0.0037 13 8 5.4237 -4.8561 0.0046 14 6 7.5567 -3.9139 0.0044 15 6 8.2602 -3.9520 -1.2043 16 17 7.4012 -3.9079 -2.7123 17 6 9.6377 -4.0247 -1.1955 18 6 10.3277 -4.0596 0.0048 19 6 9.6455 -4.0226 1.2050 20 6 8.2605 -3.9559 1.2165 21 8 7.5898 -3.9258 2.3951 22 6 8.3741 -3.9652 3.5891 23 6 7.4499 -3.9236 4.8077 24 6 7.5607 -2.7134 5.7373 25 6 8.0933 -4.0751 6.1876 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8910 28 1 3.8752 -0.6802 -0.8889 29 1 3.6586 -3.1509 -0.8874 30 1 3.6581 -3.1496 0.8925 31 1 10.1805 -4.0536 -2.1287 32 1 11.4062 -4.1160 0.0022 33 1 10.1916 -4.0507 2.1363 34 1 8.9598 -4.8842 3.6088 35 1 9.0448 -3.1063 3.6117 36 1 6.4611 -4.3587 4.6630 37 1 8.2916 -1.9466 5.4803 38 1 6.6445 -2.3519 6.2042 39 1 7.5276 -4.6095 6.9508 40 1 9.1750 -4.2044 6.2271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910260921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:13 Heat of formation + Delta-G solvation = -82.797272 kcal Electronic energy + Delta-G solvation = -24489.256754 eV Core-core repulsion = 20682.303458 eV Total energy + Delta-G solvation = -3806.953296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89120 -39.55937 -38.33086 -37.16341 -36.43050 -36.04779 -33.27241 -31.85310 -30.59474 -30.45790 -27.94605 -25.64672 -24.09335 -22.86179 -22.68351 -21.42251 -20.70762 -20.48368 -18.75708 -17.73170 -17.01617 -16.84678 -16.37914 -16.21854 -15.79016 -15.49599 -15.25590 -14.93268 -14.43736 -14.18132 -13.74732 -13.65603 -13.19092 -13.12218 -12.51164 -12.38142 -12.26322 -12.12047 -11.85969 -11.52648 -11.43973 -11.30629 -11.28130 -11.18502 -10.81762 -10.66025 -10.61822 -10.33774 -9.96217 -9.89308 -9.63965 -9.30727 -9.20966 -8.65566 -8.58673 -6.09396 -4.10108 0.57312 0.88244 1.71057 2.39793 2.69639 2.95730 3.24674 3.30876 3.37732 3.43319 3.45428 4.24377 4.40380 4.42138 4.48102 4.51745 4.60896 4.72669 4.79501 4.81943 4.93245 5.02680 5.12831 5.24389 5.26081 5.28702 5.57619 5.66722 5.69969 5.76695 5.83422 5.86704 6.02357 6.03746 6.09212 6.50523 6.76979 6.94560 7.22621 7.27419 7.66150 8.11062 8.43798 8.92562 9.50467 11.03219 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.004197 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.823180 B = 6669.617016 C = 8973.022222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.347 6.347 12 C 0.519 3.481 13 O -0.494 6.494 14 C -0.128 4.128 15 C 0.036 3.964 16 Cl -0.039 7.039 17 C -0.151 4.151 18 C -0.049 4.049 19 C -0.209 4.209 20 C 0.184 3.816 21 O -0.298 6.298 22 C 0.091 3.909 23 C -0.161 4.161 24 C -0.173 4.173 25 C -0.168 4.168 26 H 0.265 0.735 27 H 0.028 0.972 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.248 -8.391 5.966 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.009 3.991 11 O -0.263 6.263 12 C 0.360 3.640 13 O -0.382 6.382 14 C -0.131 4.131 15 C 0.009 3.991 16 Cl -0.010 7.010 17 C -0.169 4.169 18 C -0.067 4.067 19 C -0.228 4.228 20 C 0.137 3.863 21 O -0.210 6.210 22 C 0.016 3.984 23 C -0.179 4.179 24 C -0.210 4.210 25 C -0.205 4.205 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 25.529 -8.535 5.887 27.554 hybrid contribution 0.284 0.793 -0.095 0.848 sum 25.813 -7.741 5.793 27.564 Atomic orbital electron populations 1.69891 1.06259 1.27150 1.50292 1.24914 0.94737 0.99103 0.94155 0.86777 0.80483 0.83354 0.78793 1.20017 1.21176 1.18730 1.20844 0.88239 0.95051 1.52192 0.90607 1.19623 0.96963 0.90099 0.97915 1.23434 0.72043 1.01704 1.01870 1.86637 1.26321 1.30991 1.82397 1.20463 0.87767 0.82837 0.72903 1.90849 1.66210 1.36373 1.44725 1.18269 0.91409 1.12492 0.90937 1.20615 0.92400 0.99843 0.86238 1.98431 1.76909 1.96270 1.29381 1.20894 0.91106 1.05160 0.99777 1.21026 1.00353 0.94531 0.90790 1.21262 0.92080 1.09213 1.00230 1.18617 0.90188 0.92857 0.84653 1.86115 1.35924 1.87065 1.11945 1.22445 0.92958 1.01628 0.81337 1.22105 1.01730 1.04805 0.89270 1.23126 1.03666 0.91292 1.02897 1.22993 1.00843 1.00630 0.96039 0.92471 0.95363 0.95761 0.91593 0.91565 0.83828 0.84096 0.84098 0.91080 0.91260 0.86169 0.88433 0.88046 0.88040 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.53 -15.31 9.66 -34.44 -0.33 -15.65 16 8 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.88 5.41 37.16 0.20 2.09 16 11 O -0.35 -7.43 10.23 -40.64 -0.42 -7.84 16 12 C 0.52 10.26 5.98 34.42 0.21 10.47 16 13 O -0.49 -10.83 16.90 -19.28 -0.33 -11.15 16 14 C -0.13 -2.04 5.77 -104.83 -0.60 -2.64 16 15 C 0.04 0.49 6.35 -39.07 -0.25 0.24 16 16 Cl -0.04 -0.56 28.04 -51.86 -1.45 -2.01 16 17 C -0.15 -1.44 9.81 -39.60 -0.39 -1.83 16 18 C -0.05 -0.38 10.03 -39.54 -0.40 -0.77 16 19 C -0.21 -1.91 9.03 -39.48 -0.36 -2.26 16 20 C 0.18 2.46 6.70 -38.67 -0.26 2.20 16 21 O -0.30 -4.15 9.59 -18.63 -0.18 -4.32 16 22 C 0.09 0.84 5.02 37.16 0.19 1.03 16 23 C -0.16 -1.51 6.06 -90.62 -0.55 -2.06 16 24 C -0.17 -1.43 10.18 -26.73 -0.27 -1.70 16 25 C -0.17 -1.15 10.25 -26.73 -0.27 -1.42 16 26 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 28 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 29 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 33 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 34 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 35 H 0.07 0.52 7.40 -51.93 -0.38 0.13 16 36 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -34.32 362.48 -9.38 -43.70 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.26 Total: -3.43 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.31 Total: -10.60 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.92 Total: -23.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.45 Total: -2.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.32 -9.38 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910260921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.099 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds