Wall clock time and date at job start Tue Mar 31 2020 14:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99782 * 2 1 4 4 H 1.48500 * 109.46741 * 269.99846 * 3 2 1 5 5 H 1.48494 * 109.47018 * 29.99738 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99742 * 3 2 1 7 7 C 1.37872 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00052 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00297 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47327 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47416 * 179.97438 * 10 9 7 12 12 C 1.34754 * 117.00133 * 179.97438 * 11 10 9 13 13 O 1.21522 * 119.99979 * 0.02562 * 12 11 10 14 14 C 1.47321 * 119.99969 * 180.02562 * 12 11 10 15 15 C 1.39902 * 120.21268 * 270.00109 * 14 12 11 16 16 Cl 1.73603 * 120.06223 * 0.02562 * 15 14 12 17 17 C 1.37941 * 119.87166 * 180.02562 * 15 14 12 18 18 C 1.38494 * 120.28888 * 359.97438 * 17 15 14 19 19 C 1.38098 * 120.42911 * 0.02562 * 18 17 15 20 20 C 1.38665 * 120.12509 * 0.27898 * 19 18 17 21 21 O 1.35643 * 120.14682 * 179.69874 * 20 19 18 22 22 C 1.42900 * 116.99797 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46523 * 180.02562 * 22 21 20 24 24 C 1.53002 * 117.49380 * 243.61616 * 23 22 21 25 25 C 1.52998 * 60.00111 * 252.51335 * 24 23 22 26 26 H 0.96998 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47500 * 59.99505 * 9 7 2 28 28 H 1.09002 * 109.46749 * 299.99796 * 9 7 2 29 29 H 1.09000 * 109.47653 * 59.99168 * 10 9 7 30 30 H 1.09002 * 109.47048 * 299.99623 * 10 9 7 31 31 H 1.07995 * 119.85654 * 180.02562 * 17 15 14 32 32 H 1.08007 * 119.78571 * 180.02562 * 18 17 15 33 33 H 1.08002 * 119.93465 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.46938 * 299.99688 * 22 21 20 35 35 H 1.08998 * 109.47443 * 59.99888 * 22 21 20 36 36 H 1.08993 * 115.55387 * 29.32907 * 23 22 21 37 37 H 1.09002 * 117.50109 * 0.02562 * 24 23 22 38 38 H 1.09004 * 117.49716 * 145.02345 * 24 23 22 39 39 H 1.08998 * 117.50186 * 252.50936 * 25 24 23 40 40 H 1.09003 * 117.49474 * 107.48942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 8 5.4737 -2.6363 0.0022 12 6 6.0855 -3.8369 0.0037 13 8 5.4237 -4.8561 0.0046 14 6 7.5567 -3.9139 0.0044 15 6 8.2602 -3.9520 -1.2043 16 17 7.4012 -3.9079 -2.7123 17 6 9.6377 -4.0247 -1.1955 18 6 10.3277 -4.0596 0.0048 19 6 9.6455 -4.0226 1.2050 20 6 8.2605 -3.9559 1.2165 21 8 7.5898 -3.9258 2.3951 22 6 8.3741 -3.9652 3.5891 23 6 7.4499 -3.9236 4.8077 24 6 7.5607 -2.7134 5.7373 25 6 8.0933 -4.0751 6.1876 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8910 28 1 3.8752 -0.6802 -0.8889 29 1 3.6586 -3.1509 -0.8874 30 1 3.6581 -3.1496 0.8925 31 1 10.1805 -4.0536 -2.1287 32 1 11.4062 -4.1160 0.0022 33 1 10.1916 -4.0507 2.1363 34 1 8.9598 -4.8842 3.6088 35 1 9.0448 -3.1063 3.6117 36 1 6.4611 -4.3587 4.6630 37 1 8.2916 -1.9466 5.4803 38 1 6.6445 -2.3519 6.2042 39 1 7.5276 -4.6095 6.9508 40 1 9.1750 -4.2044 6.2271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910260921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:12 Heat of formation + Delta-G solvation = -102.570166 kcal Electronic energy + Delta-G solvation = -24490.114171 eV Core-core repulsion = 20682.303458 eV Total energy + Delta-G solvation = -3807.810713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98438 -40.89810 -39.17823 -37.94307 -37.75490 -37.31433 -35.44290 -33.13899 -32.37284 -31.26885 -28.66320 -27.49512 -25.40272 -23.66033 -23.27557 -22.84375 -22.35679 -21.48665 -19.80455 -19.23713 -18.61583 -18.05057 -17.90281 -17.23052 -16.96605 -16.44161 -16.33311 -16.19149 -15.81839 -15.22644 -14.96218 -14.87683 -14.57786 -14.42919 -14.33576 -13.39106 -13.28565 -13.18540 -13.05369 -12.87264 -12.59400 -12.53739 -12.42107 -12.32492 -12.20274 -12.07717 -11.85371 -11.64841 -11.56215 -11.52823 -11.44743 -10.95979 -10.84529 -10.12527 -9.48674 -8.37489 -6.46055 -0.30132 0.07540 0.75970 0.89170 1.34909 1.36519 1.49732 1.59959 1.92580 2.31649 2.37215 2.83280 2.96791 3.43134 3.58648 3.78012 3.83077 3.86385 3.92151 4.06788 4.07565 4.09824 4.13212 4.21902 4.29913 4.40044 4.51850 4.53182 4.75578 4.88906 4.90017 4.98351 5.03682 5.13318 5.15791 5.21076 5.21489 5.35399 5.44396 5.46119 6.12102 6.16309 6.49314 6.58852 7.18870 8.78690 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.004197 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.823180 B = 6669.617016 C = 8973.022222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.544 4.544 8 H 0.035 0.965 9 C 0.000 4.000 10 C 0.093 3.907 11 O -0.352 6.352 12 C 0.521 3.479 13 O -0.529 6.529 14 C -0.175 4.175 15 C 0.019 3.981 16 Cl -0.062 7.062 17 C -0.141 4.141 18 C -0.024 4.024 19 C -0.195 4.195 20 C 0.170 3.830 21 O -0.336 6.336 22 C 0.087 3.913 23 C -0.188 4.188 24 C -0.183 4.183 25 C -0.142 4.142 26 H 0.272 0.728 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.174 0.826 32 H 0.195 0.805 33 H 0.180 0.820 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.505 -7.398 6.748 33.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.581 4.581 8 H 0.054 0.946 9 C -0.037 4.037 10 C 0.019 3.981 11 O -0.268 6.268 12 C 0.365 3.635 13 O -0.418 6.418 14 C -0.177 4.177 15 C -0.008 4.008 16 Cl -0.032 7.032 17 C -0.160 4.160 18 C -0.042 4.042 19 C -0.213 4.213 20 C 0.123 3.877 21 O -0.250 6.250 22 C 0.013 3.987 23 C -0.206 4.206 24 C -0.219 4.219 25 C -0.179 4.179 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.191 0.809 32 H 0.212 0.788 33 H 0.198 0.802 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 30.804 -7.559 6.674 32.412 hybrid contribution -1.310 0.369 -0.271 1.388 sum 29.493 -7.189 6.403 31.025 Atomic orbital electron populations 1.70028 1.08225 1.28708 1.51152 1.25904 0.95668 1.03415 0.93255 0.85640 0.79475 0.77824 0.79695 1.18597 1.20064 1.17145 1.21062 0.90375 0.93949 1.52757 0.94624 1.19442 0.94444 0.91446 0.98363 1.23023 0.73734 1.00293 1.01016 1.86625 1.24768 1.32593 1.82842 1.21321 0.89672 0.81514 0.71037 1.90806 1.67594 1.37113 1.46301 1.18297 0.88578 1.17440 0.93421 1.20858 0.93737 1.01595 0.84583 1.98417 1.77782 1.96508 1.30530 1.21362 0.89256 1.03209 1.02152 1.21679 1.02684 0.90720 0.89098 1.21740 0.90017 1.06930 1.02651 1.18883 0.91788 0.93472 0.83576 1.86076 1.38288 1.87326 1.13321 1.22741 0.92805 1.03769 0.79359 1.22123 1.01216 1.06210 0.91069 1.23209 1.03848 0.92062 1.02831 1.23104 1.02186 0.98750 0.93831 0.91907 0.94810 0.94787 0.92401 0.92622 0.80885 0.78812 0.80249 0.88668 0.88987 0.89267 0.87235 0.89134 0.87686 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.84 13.96 21.44 0.30 -59.54 16 2 C 0.02 0.95 5.47 84.65 0.46 1.42 16 3 Si 0.95 44.91 27.47 68.60 1.88 46.80 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.54 -33.00 9.66 25.60 0.25 -32.76 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C 0.00 0.03 4.42 29.85 0.13 0.16 16 10 C 0.09 4.49 5.41 71.98 0.39 4.88 16 11 O -0.35 -15.70 10.23 -56.65 -0.58 -16.28 16 12 C 0.52 21.62 5.98 70.21 0.42 22.04 16 13 O -0.53 -24.75 16.90 19.77 0.33 -24.41 16 14 C -0.17 -5.57 5.77 -20.00 -0.12 -5.68 16 15 C 0.02 0.50 6.35 22.60 0.14 0.64 16 16 Cl -0.06 -1.76 28.04 -2.72 -0.08 -1.83 16 17 C -0.14 -2.16 9.81 22.26 0.22 -1.94 16 18 C -0.02 -0.23 10.03 22.30 0.22 -0.01 16 19 C -0.20 -2.66 9.03 22.34 0.20 -2.45 16 20 C 0.17 4.28 6.70 22.86 0.15 4.44 16 21 O -0.34 -9.29 9.59 -89.57 -0.86 -10.14 16 22 C 0.09 1.42 5.02 71.98 0.36 1.78 16 23 C -0.19 -3.45 6.06 -10.79 -0.07 -3.51 16 24 C -0.18 -2.84 10.18 30.59 0.31 -2.53 16 25 C -0.14 -1.63 10.25 30.59 0.31 -1.32 16 26 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 27 H 0.03 1.70 7.20 -2.39 -0.02 1.68 16 28 H 0.03 1.68 7.57 -2.39 -0.02 1.66 16 29 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 33 H 0.18 1.02 6.30 -2.91 -0.02 1.00 16 34 H 0.10 1.03 7.66 -2.39 -0.02 1.01 16 35 H 0.09 1.04 7.40 -2.39 -0.02 1.02 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 1.41 8.03 -2.39 -0.02 1.39 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -80.99 362.48 5.40 -75.59 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.00 Total: 4.65 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.40 Total: -14.84 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.30 Total: -59.54 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -1.10 Total: -50.83 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.83 kcal Total: -80.99 5.40 -75.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910260921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.978 kcal (2) G-P(sol) polarization free energy of solvation -80.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds