Wall clock time and date at job start Tue Mar 31 2020 14:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48505 * 109.46883 * 270.00068 * 3 2 1 5 5 H 1.48501 * 109.47192 * 29.99905 * 3 2 1 6 6 H 1.48504 * 109.46964 * 150.00221 * 3 2 1 7 7 C 1.37880 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00165 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47483 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47677 * 179.97438 * 11 10 9 13 13 C 1.34223 * 117.00557 * 180.02562 * 12 11 10 14 14 O 1.20829 * 119.99908 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00402 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.69590 * 300.56358 * 15 13 12 17 17 C 1.53412 * 109.73338 * 61.15350 * 15 13 12 18 18 O 1.42821 * 108.38085 * 184.45740 * 17 15 13 19 19 C 1.35875 * 117.87310 * 310.89702 * 18 17 15 20 20 C 1.39143 * 118.48443 * 197.00456 * 19 18 17 21 21 C 1.37968 * 120.23284 * 180.18748 * 20 19 18 22 22 C 1.38396 * 119.94521 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.02230 * 179.97438 * 22 21 20 24 24 C 1.38200 * 119.95096 * 359.91897 * 22 21 20 25 25 C 1.38357 * 121.80096 * 17.05222 * 19 18 17 26 26 C 1.50772 * 121.40932 * 359.65713 * 25 19 18 27 27 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47776 * 59.99925 * 9 7 2 29 29 H 1.09001 * 109.47196 * 299.99404 * 9 7 2 30 30 H 1.09000 * 109.47270 * 60.00055 * 10 9 7 31 31 H 1.09006 * 109.46942 * 299.99909 * 10 9 7 32 32 H 1.09010 * 109.47141 * 59.99533 * 11 10 9 33 33 H 1.08997 * 109.47093 * 300.00219 * 11 10 9 34 34 H 1.08996 * 109.68584 * 64.73592 * 17 15 13 35 35 H 1.08999 * 109.68559 * 304.17833 * 17 15 13 36 36 H 1.08002 * 119.88281 * 0.18942 * 20 19 18 37 37 H 1.07999 * 120.02296 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.84463 * 179.97438 * 24 22 21 39 39 H 1.09001 * 109.43781 * 137.85206 * 26 25 19 40 40 H 1.09001 * 109.43865 * 257.76408 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6367 0.0009 12 8 6.0355 -4.0056 0.0014 13 6 7.3661 -4.1815 0.0020 14 8 8.1022 -3.2233 0.0016 15 6 7.9421 -5.5741 0.0019 16 1 7.5999 -6.1132 0.8853 17 6 7.4969 -6.3188 -1.2633 18 8 7.9703 -7.6639 -1.1842 19 6 9.2767 -7.8600 -0.8666 20 6 9.8444 -9.1027 -1.1299 21 6 11.1670 -9.3424 -0.8185 22 6 11.9327 -8.3442 -0.2416 23 17 13.5968 -8.6438 0.1517 24 6 11.3718 -7.1085 0.0200 25 6 10.0452 -6.8626 -0.2931 26 6 9.4710 -5.5002 0.0026 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8751 -0.6805 -0.8889 30 1 3.6585 -3.1502 -0.8892 31 1 3.6577 -3.1506 0.8908 32 1 5.9149 -2.1228 0.8910 33 1 5.9148 -2.1228 -0.8890 34 1 7.9183 -5.8325 -2.1430 35 1 6.4088 -6.3157 -1.3274 36 1 9.2477 -9.8825 -1.5798 37 1 11.6040 -10.3084 -1.0239 38 1 11.9708 -6.3310 0.4706 39 1 9.8176 -5.1649 0.9801 40 1 9.7999 -4.7946 -0.7604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914619710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:18 Heat of formation + Delta-G solvation = -125.100956 kcal Electronic energy + Delta-G solvation = -23746.737940 eV Core-core repulsion = 19937.950219 eV Total energy + Delta-G solvation = -3808.787721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50689 -40.29469 -38.25479 -36.87951 -36.61664 -34.76447 -34.15495 -31.98418 -31.38074 -30.58344 -27.80099 -26.29169 -25.26793 -23.28002 -23.07225 -21.62510 -20.46488 -19.98280 -18.43719 -18.02029 -17.33770 -16.84285 -16.66895 -16.47156 -16.09219 -15.31831 -15.07103 -14.56812 -14.33677 -14.15274 -14.12858 -13.80909 -13.72248 -13.28083 -12.94865 -12.79841 -12.65897 -12.44835 -12.02019 -11.97407 -11.62940 -11.30980 -11.19903 -11.13718 -11.05450 -11.01887 -10.67748 -10.54873 -10.07532 -9.88814 -9.78559 -9.39318 -9.30309 -8.61209 -8.56770 -6.11311 -4.10752 0.68677 0.73842 1.73150 1.98339 2.46920 2.78736 3.11758 3.26028 3.34063 3.36658 3.94354 4.03536 4.16709 4.28563 4.38658 4.49808 4.60700 4.70902 4.84163 4.97693 5.06416 5.09400 5.21563 5.34497 5.36003 5.36731 5.40380 5.47042 5.54644 5.74728 5.75607 5.81403 6.05009 6.21315 6.30256 6.53620 6.70887 6.86691 7.14024 7.25597 7.60446 7.70081 8.44770 8.92700 9.49918 11.01749 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.001892 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.672925 B =14792.548408 C =15414.214717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.065 3.935 12 O -0.353 6.353 13 C 0.467 3.533 14 O -0.503 6.503 15 C -0.121 4.121 16 H 0.125 0.875 17 C 0.072 3.928 18 O -0.302 6.302 19 C 0.135 3.865 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.066 4.066 23 Cl -0.071 7.071 24 C -0.071 4.071 25 C -0.144 4.144 26 C -0.065 4.065 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.213 -19.279 -1.534 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.007 4.007 12 O -0.269 6.269 13 C 0.309 3.691 14 O -0.391 6.391 15 C -0.140 4.140 16 H 0.143 0.857 17 C -0.003 4.003 18 O -0.215 6.215 19 C 0.089 3.911 20 C -0.152 4.152 21 C -0.097 4.097 22 C -0.093 4.093 23 Cl -0.043 7.043 24 C -0.090 4.090 25 C -0.145 4.145 26 C -0.102 4.102 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.114 0.886 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 25.227 -18.993 -1.540 31.615 hybrid contribution 0.603 1.326 0.166 1.466 sum 25.830 -17.667 -1.375 31.324 Atomic orbital electron populations 1.69907 1.06275 1.27018 1.50674 1.25020 0.94768 0.99187 0.94433 0.86785 0.80352 0.83593 0.78602 1.20191 1.21242 1.19017 1.21040 0.88987 0.94688 1.51382 0.90771 1.19521 0.97600 0.90981 0.96692 1.21578 0.88533 1.00909 1.02938 1.23575 0.97231 0.77662 1.02278 1.86492 1.22806 1.34739 1.82836 1.23005 0.81722 0.91281 0.73064 1.90682 1.60711 1.42742 1.44982 1.21701 0.96947 0.92410 1.02986 0.85675 1.23029 1.01888 0.79926 0.95450 1.86098 1.22199 1.28545 1.84686 1.18819 0.83672 0.94055 0.94530 1.20562 0.94542 0.96231 1.03864 1.20846 0.92782 0.98798 0.97243 1.20714 0.86597 0.95978 1.05988 1.98372 1.16916 1.96082 1.92892 1.20768 0.93860 0.95707 0.98683 1.19692 0.94513 0.96353 1.03949 1.20410 0.91422 0.93365 1.04973 0.92604 0.96273 0.96710 0.91440 0.91414 0.91347 0.91333 0.90613 0.85247 0.83962 0.84210 0.84453 0.88643 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.10 -1.92 5.53 -26.73 -0.15 -2.06 16 11 C 0.07 1.05 5.47 37.16 0.20 1.25 16 12 O -0.35 -5.00 10.12 -39.24 -0.40 -5.39 16 13 C 0.47 5.90 7.25 36.01 0.26 6.16 16 14 O -0.50 -7.63 15.54 -18.75 -0.29 -7.92 16 15 C -0.12 -1.11 2.86 -91.52 -0.26 -1.37 16 16 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 17 C 0.07 0.61 6.29 37.37 0.23 0.84 16 18 O -0.30 -2.79 10.27 -19.35 -0.20 -2.99 16 19 C 0.13 1.20 6.47 -39.20 -0.25 0.94 16 20 C -0.13 -1.00 9.94 -39.34 -0.39 -1.39 16 21 C -0.08 -0.54 9.83 -39.62 -0.39 -0.93 16 22 C -0.07 -0.52 6.32 -39.54 -0.25 -0.77 16 23 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 24 C -0.07 -0.57 9.45 -39.50 -0.37 -0.94 16 25 C -0.14 -1.22 5.75 -104.44 -0.60 -1.82 16 26 C -0.06 -0.55 4.66 -27.81 -0.13 -0.68 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.10 8.13 -51.92 -0.42 0.67 16 33 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.13 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.87 7.69 -51.93 -0.40 0.47 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -31.31 354.04 -8.99 -40.30 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.40 Total: -3.18 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.64 Total: -14.20 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.89 Total: -16.30 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.31 -8.99 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.802 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds