Wall clock time and date at job start Tue Mar 31 2020 14:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48505 * 109.46883 * 270.00068 * 3 2 1 5 5 H 1.48501 * 109.47192 * 29.99905 * 3 2 1 6 6 H 1.48504 * 109.46964 * 150.00221 * 3 2 1 7 7 C 1.37880 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00165 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47483 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47677 * 179.97438 * 11 10 9 13 13 C 1.34223 * 117.00557 * 180.02562 * 12 11 10 14 14 O 1.20829 * 119.99908 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00402 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.69590 * 300.56358 * 15 13 12 17 17 C 1.53412 * 109.73338 * 61.15350 * 15 13 12 18 18 O 1.42821 * 108.38085 * 184.45740 * 17 15 13 19 19 C 1.35875 * 117.87310 * 310.89702 * 18 17 15 20 20 C 1.39143 * 118.48443 * 197.00456 * 19 18 17 21 21 C 1.37968 * 120.23284 * 180.18748 * 20 19 18 22 22 C 1.38396 * 119.94521 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.02230 * 179.97438 * 22 21 20 24 24 C 1.38200 * 119.95096 * 359.91897 * 22 21 20 25 25 C 1.38357 * 121.80096 * 17.05222 * 19 18 17 26 26 C 1.50772 * 121.40932 * 359.65713 * 25 19 18 27 27 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47776 * 59.99925 * 9 7 2 29 29 H 1.09001 * 109.47196 * 299.99404 * 9 7 2 30 30 H 1.09000 * 109.47270 * 60.00055 * 10 9 7 31 31 H 1.09006 * 109.46942 * 299.99909 * 10 9 7 32 32 H 1.09010 * 109.47141 * 59.99533 * 11 10 9 33 33 H 1.08997 * 109.47093 * 300.00219 * 11 10 9 34 34 H 1.08996 * 109.68584 * 64.73592 * 17 15 13 35 35 H 1.08999 * 109.68559 * 304.17833 * 17 15 13 36 36 H 1.08002 * 119.88281 * 0.18942 * 20 19 18 37 37 H 1.07999 * 120.02296 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.84463 * 179.97438 * 24 22 21 39 39 H 1.09001 * 109.43781 * 137.85206 * 26 25 19 40 40 H 1.09001 * 109.43865 * 257.76408 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6367 0.0009 12 8 6.0355 -4.0056 0.0014 13 6 7.3661 -4.1815 0.0020 14 8 8.1022 -3.2233 0.0016 15 6 7.9421 -5.5741 0.0019 16 1 7.5999 -6.1132 0.8853 17 6 7.4969 -6.3188 -1.2633 18 8 7.9703 -7.6639 -1.1842 19 6 9.2767 -7.8600 -0.8666 20 6 9.8444 -9.1027 -1.1299 21 6 11.1670 -9.3424 -0.8185 22 6 11.9327 -8.3442 -0.2416 23 17 13.5968 -8.6438 0.1517 24 6 11.3718 -7.1085 0.0200 25 6 10.0452 -6.8626 -0.2931 26 6 9.4710 -5.5002 0.0026 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8751 -0.6805 -0.8889 30 1 3.6585 -3.1502 -0.8892 31 1 3.6577 -3.1506 0.8908 32 1 5.9149 -2.1228 0.8910 33 1 5.9148 -2.1228 -0.8890 34 1 7.9183 -5.8325 -2.1430 35 1 6.4088 -6.3157 -1.3274 36 1 9.2477 -9.8825 -1.5798 37 1 11.6040 -10.3084 -1.0239 38 1 11.9708 -6.3310 0.4706 39 1 9.8176 -5.1649 0.9801 40 1 9.7999 -4.7946 -0.7604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914619710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:18 Heat of formation + Delta-G solvation = -141.115773 kcal Electronic energy + Delta-G solvation = -23747.432395 eV Core-core repulsion = 19937.950219 eV Total energy + Delta-G solvation = -3809.482176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27766 -41.23394 -38.87423 -38.02774 -37.20287 -35.95026 -35.49173 -33.87829 -32.11407 -31.17713 -29.48667 -26.96894 -26.20891 -24.66880 -23.79435 -22.54503 -22.06699 -20.87768 -19.15473 -18.99568 -18.90525 -18.03328 -17.65526 -17.29297 -16.99872 -16.29350 -16.14080 -15.84042 -15.37805 -15.04818 -14.94934 -14.81924 -14.59567 -14.42720 -14.15563 -13.86961 -13.78865 -13.54042 -13.34053 -12.86933 -12.61304 -12.59757 -12.28982 -12.19242 -12.05364 -11.88809 -11.79936 -11.75799 -11.67573 -11.42041 -11.39245 -11.34901 -10.77740 -9.97034 -9.18292 -8.30374 -6.35382 0.09458 0.15493 0.97832 1.14188 1.36621 1.38253 1.46942 1.49836 2.13106 2.35261 2.51990 3.04861 3.21134 3.33663 3.45557 3.67296 3.74950 3.94217 4.00432 4.01121 4.07617 4.27703 4.33968 4.37805 4.44212 4.46428 4.73779 4.73817 4.75811 4.77888 4.89148 4.93194 4.96042 5.18574 5.20847 5.29743 5.47973 5.49002 5.50413 5.62248 6.23673 6.25449 6.56137 6.72907 7.29161 8.86053 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.001892 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.672925 B =14792.548408 C =15414.214717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.074 3.926 12 O -0.354 6.354 13 C 0.472 3.528 14 O -0.527 6.527 15 C -0.112 4.112 16 H 0.138 0.862 17 C 0.072 3.928 18 O -0.308 6.308 19 C 0.118 3.882 20 C -0.135 4.135 21 C -0.075 4.075 22 C -0.074 4.074 23 Cl -0.070 7.070 24 C -0.077 4.077 25 C -0.149 4.149 26 C -0.061 4.061 27 H 0.267 0.733 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.100 0.900 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.483 -19.546 -1.644 33.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.048 4.048 10 C -0.131 4.131 11 C 0.001 3.999 12 O -0.270 6.270 13 C 0.316 3.684 14 O -0.417 6.417 15 C -0.131 4.131 16 H 0.155 0.845 17 C -0.003 4.003 18 O -0.222 6.222 19 C 0.073 3.927 20 C -0.154 4.154 21 C -0.094 4.094 22 C -0.100 4.100 23 Cl -0.042 7.042 24 C -0.096 4.096 25 C -0.150 4.150 26 C -0.098 4.098 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.164 0.836 39 H 0.118 0.882 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 27.519 -19.288 -1.651 33.646 hybrid contribution -0.105 1.273 0.198 1.293 sum 27.414 -18.014 -1.452 32.835 Atomic orbital electron populations 1.70063 1.08290 1.28225 1.52388 1.26014 0.95638 1.03540 0.94089 0.85670 0.79538 0.78236 0.79290 1.19065 1.21043 1.16881 1.21413 0.91776 0.93326 1.50679 0.94596 1.19454 0.94243 0.93855 0.97213 1.21328 0.90775 0.98284 1.02722 1.23229 0.95109 0.78805 1.02748 1.86479 1.23999 1.33433 1.83117 1.23576 0.80734 0.92308 0.71809 1.90676 1.60950 1.43872 1.46157 1.21730 0.97167 0.90195 1.04017 0.84452 1.23074 1.02332 0.79750 0.95105 1.86093 1.22543 1.28675 1.84891 1.19053 0.83667 0.94773 0.95230 1.20797 0.94880 0.96158 1.03540 1.21101 0.92513 0.99449 0.96319 1.20861 0.86784 0.96238 1.06154 1.98374 1.16838 1.96059 1.92897 1.20901 0.93809 0.96159 0.98697 1.19676 0.94769 0.96165 1.04397 1.20370 0.90859 0.93458 1.05086 0.92436 0.95679 0.95668 0.91591 0.91860 0.91066 0.90730 0.90146 0.84591 0.82464 0.82190 0.83577 0.88170 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.95 43.36 27.47 68.60 1.88 45.25 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.53 -30.16 9.66 25.60 0.25 -29.91 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.43 5.53 30.59 0.17 -3.26 16 11 C 0.07 2.26 5.47 71.98 0.39 2.65 16 12 O -0.35 -9.47 10.12 -51.35 -0.52 -9.99 16 13 C 0.47 11.18 7.25 71.24 0.52 11.69 16 14 O -0.53 -15.22 15.54 21.95 0.34 -14.88 16 15 C -0.11 -1.87 2.86 -11.38 -0.03 -1.90 16 16 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.07 1.11 6.29 72.12 0.45 1.56 16 18 O -0.31 -5.24 10.27 -92.14 -0.95 -6.19 16 19 C 0.12 1.91 6.47 22.52 0.15 2.06 16 20 C -0.14 -1.78 9.94 22.42 0.22 -1.56 16 21 C -0.08 -0.90 9.83 22.24 0.22 -0.68 16 22 C -0.07 -1.03 6.32 22.30 0.14 -0.89 16 23 Cl -0.07 -0.96 28.96 -2.72 -0.08 -1.04 16 24 C -0.08 -1.12 9.45 22.33 0.21 -0.90 16 25 C -0.15 -2.33 5.75 -19.75 -0.11 -2.44 16 26 C -0.06 -0.96 4.66 29.89 0.14 -0.82 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.02 1.09 7.20 -2.39 -0.02 1.08 16 29 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.07 2.14 8.13 -2.38 -0.02 2.12 16 33 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 1.88 8.08 -2.39 -0.02 1.86 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.54 7.69 -2.39 -0.02 1.52 16 Total: -1.00 -67.16 354.04 5.27 -61.90 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.99 Total: 7.61 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.30 Total: -24.04 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.30 Total: -58.63 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.12 Total: -31.05 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -67.16 5.27 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.219 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds