Wall clock time and date at job start Tue Mar 31 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 120.00269 * 2 1 4 4 H 1.48501 * 109.47263 * 269.99933 * 3 2 1 5 5 H 1.48501 * 109.47173 * 29.99800 * 3 2 1 6 6 H 1.48497 * 109.47226 * 150.00326 * 3 2 1 7 7 C 1.37881 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.34223 * 116.99813 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00514 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99562 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.69674 * 60.55862 * 15 13 12 17 17 C 1.53410 * 109.69768 * 299.99819 * 15 13 12 18 18 O 1.42827 * 108.38418 * 175.62813 * 17 15 13 19 19 C 1.35871 * 117.86644 * 49.21165 * 18 17 15 20 20 C 1.39132 * 118.48478 * 162.87727 * 19 18 17 21 21 C 1.37970 * 120.23016 * 179.54452 * 20 19 18 22 22 C 1.38384 * 119.94348 * 0.02562 * 21 20 19 23 23 Cl 1.73609 * 120.02184 * 180.10465 * 22 21 20 24 24 C 1.38198 * 119.95951 * 0.09004 * 22 21 20 25 25 C 1.38363 * 121.79105 * 342.59467 * 19 18 17 26 26 C 1.50774 * 121.40507 * 0.81661 * 25 19 18 27 27 H 0.96995 * 119.99382 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47102 * 59.99668 * 9 7 2 29 29 H 1.08996 * 109.46759 * 299.99409 * 9 7 2 30 30 H 1.09001 * 109.46547 * 59.99746 * 10 9 7 31 31 H 1.08995 * 109.47279 * 300.00499 * 10 9 7 32 32 H 1.09001 * 109.47320 * 60.00591 * 11 10 9 33 33 H 1.09000 * 109.47519 * 300.00175 * 11 10 9 34 34 H 1.08997 * 109.67549 * 55.90300 * 17 15 13 35 35 H 1.09001 * 109.71088 * 295.37113 * 17 15 13 36 36 H 1.07996 * 119.88753 * 359.52127 * 20 19 18 37 37 H 1.07999 * 120.02511 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.84907 * 179.97438 * 24 22 21 39 39 H 1.08998 * 109.42877 * 101.99555 * 26 25 19 40 40 H 1.08998 * 109.43961 * 221.86556 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5514 -2.6368 -0.0001 12 8 6.0354 -4.0058 -0.0009 13 6 7.3661 -4.1817 -0.0005 14 8 8.1022 -3.2235 0.0000 15 6 7.9420 -5.5743 -0.0006 16 1 7.6166 -6.1064 -0.8945 17 6 7.4719 -6.3284 1.2499 18 8 7.9480 -7.6726 1.1709 19 6 9.2613 -7.8652 0.8808 20 6 9.8248 -9.1087 1.1492 21 6 11.1527 -9.3466 0.8601 22 6 11.9282 -8.3456 0.3017 23 17 13.5986 -8.6436 -0.0654 24 6 11.3719 -7.1087 0.0362 25 6 10.0394 -6.8649 0.3254 26 6 9.4710 -5.5000 0.0300 27 1 -0.4849 0.8401 0.0004 28 1 3.8745 -0.6809 0.8905 29 1 3.8752 -0.6799 -0.8895 30 1 3.6584 -3.1503 -0.8903 31 1 3.6578 -3.1508 0.8896 32 1 5.9149 -2.1231 0.8899 33 1 5.9148 -2.1229 -0.8900 34 1 6.3827 -6.3265 1.2918 35 1 7.8744 -5.8482 2.1418 36 1 9.2208 -9.8903 1.5856 37 1 11.5868 -10.3129 1.0702 38 1 11.9788 -6.3286 -0.3992 39 1 9.7854 -4.8009 0.8049 40 1 9.8365 -5.1565 -0.9377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914619712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:21 Heat of formation + Delta-G solvation = -125.117652 kcal Electronic energy + Delta-G solvation = -23748.497920 eV Core-core repulsion = 19939.709475 eV Total energy + Delta-G solvation = -3808.788445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50444 -40.29429 -38.25373 -36.87849 -36.61589 -34.76387 -34.15483 -31.98476 -31.38082 -30.58261 -27.80041 -26.28947 -25.26514 -23.27863 -23.07242 -21.62474 -20.46630 -19.98731 -18.43570 -18.01303 -17.33848 -16.84203 -16.67362 -16.46783 -16.08785 -15.32058 -15.06742 -14.56955 -14.33516 -14.16887 -14.11768 -13.80024 -13.72448 -13.28200 -12.94972 -12.79557 -12.66100 -12.44908 -12.01211 -11.98013 -11.62843 -11.31144 -11.20230 -11.13174 -11.05369 -11.01989 -10.67475 -10.54995 -10.07554 -9.88840 -9.78565 -9.39314 -9.30302 -8.61182 -8.56821 -6.11337 -4.10761 0.68688 0.73880 1.73133 1.98527 2.47089 2.78965 3.11635 3.26087 3.34071 3.36608 3.94111 4.03765 4.16739 4.28727 4.38668 4.49724 4.60760 4.70857 4.84287 4.97750 5.06517 5.09780 5.21550 5.34543 5.36009 5.36769 5.40545 5.47072 5.54633 5.74745 5.75608 5.81479 6.05079 6.21289 6.30248 6.53568 6.70891 6.86815 7.14002 7.25569 7.60424 7.70066 8.44766 8.92681 9.49903 11.01744 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.037487 B = 0.001893 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.740368 B =14785.334325 C =15411.464027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.065 3.935 12 O -0.353 6.353 13 C 0.467 3.533 14 O -0.503 6.503 15 C -0.121 4.121 16 H 0.126 0.874 17 C 0.072 3.928 18 O -0.302 6.302 19 C 0.135 3.865 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.066 4.066 23 Cl -0.071 7.071 24 C -0.071 4.071 25 C -0.144 4.144 26 C -0.065 4.065 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.184 -19.288 1.651 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.007 4.007 12 O -0.269 6.269 13 C 0.309 3.691 14 O -0.391 6.391 15 C -0.140 4.140 16 H 0.144 0.856 17 C -0.003 4.003 18 O -0.215 6.215 19 C 0.089 3.911 20 C -0.152 4.152 21 C -0.097 4.097 22 C -0.093 4.093 23 Cl -0.043 7.043 24 C -0.090 4.090 25 C -0.145 4.145 26 C -0.101 4.101 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.114 0.886 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 25.197 -19.002 1.660 31.602 hybrid contribution 0.606 1.327 -0.199 1.473 sum 25.803 -17.674 1.461 31.310 Atomic orbital electron populations 1.69909 1.06273 1.27014 1.50678 1.25021 0.94772 0.99190 0.94435 0.86782 0.80341 0.83585 0.78606 1.20196 1.21244 1.19021 1.21042 0.88987 0.94688 1.51377 0.90772 1.19522 0.97601 0.90982 0.96694 1.21576 0.88536 1.00908 1.02939 1.23575 0.97229 0.77659 1.02278 1.86494 1.22808 1.34741 1.82842 1.23009 0.81723 0.91286 0.73061 1.90682 1.60707 1.42743 1.44986 1.21711 0.96881 0.92350 1.03084 0.85648 1.23033 1.01763 0.79900 0.95625 1.86100 1.21482 1.28584 1.85369 1.18818 0.83566 0.94059 0.94640 1.20560 0.94537 0.96217 1.03882 1.20844 0.92679 0.98785 0.97364 1.20712 0.86405 0.95938 1.06214 1.98373 1.16325 1.96114 1.93458 1.20769 0.93863 0.95723 0.98667 1.19698 0.94379 0.96321 1.04105 1.20412 0.91460 0.93298 1.04978 0.92606 0.96274 0.96705 0.91445 0.91409 0.91328 0.91349 0.85232 0.90619 0.83963 0.84211 0.84453 0.88562 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.92 5.53 -26.73 -0.15 -2.06 16 11 C 0.07 1.05 5.47 37.15 0.20 1.25 16 12 O -0.35 -4.99 10.08 -39.24 -0.40 -5.39 16 13 C 0.47 5.89 7.26 36.01 0.26 6.15 16 14 O -0.50 -7.63 15.55 -18.75 -0.29 -7.92 16 15 C -0.12 -1.11 2.87 -91.50 -0.26 -1.37 16 16 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 17 C 0.07 0.60 6.28 37.37 0.23 0.84 16 18 O -0.30 -2.80 10.27 -19.33 -0.20 -2.99 16 19 C 0.13 1.20 6.47 -39.20 -0.25 0.94 16 20 C -0.13 -1.00 9.93 -39.35 -0.39 -1.39 16 21 C -0.08 -0.54 9.83 -39.63 -0.39 -0.93 16 22 C -0.07 -0.52 6.32 -39.54 -0.25 -0.77 16 23 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 24 C -0.07 -0.57 9.45 -39.49 -0.37 -0.94 16 25 C -0.14 -1.22 5.75 -104.44 -0.60 -1.82 16 26 C -0.06 -0.55 4.65 -27.79 -0.13 -0.68 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 33 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 34 H 0.13 1.00 8.05 -51.93 -0.42 0.58 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.10 0.87 7.72 -51.93 -0.40 0.47 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -31.31 354.00 -8.99 -40.29 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.40 Total: -3.18 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.64 Total: -14.20 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.89 Total: -16.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.31 -8.99 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.823 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds