Wall clock time and date at job start Tue Mar 31 2020 14:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 120.00269 * 2 1 4 4 H 1.48501 * 109.47263 * 269.99933 * 3 2 1 5 5 H 1.48501 * 109.47173 * 29.99800 * 3 2 1 6 6 H 1.48497 * 109.47226 * 150.00326 * 3 2 1 7 7 C 1.37881 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.34223 * 116.99813 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00514 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99562 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.69674 * 60.55862 * 15 13 12 17 17 C 1.53410 * 109.69768 * 299.99819 * 15 13 12 18 18 O 1.42827 * 108.38418 * 175.62813 * 17 15 13 19 19 C 1.35871 * 117.86644 * 49.21165 * 18 17 15 20 20 C 1.39132 * 118.48478 * 162.87727 * 19 18 17 21 21 C 1.37970 * 120.23016 * 179.54452 * 20 19 18 22 22 C 1.38384 * 119.94348 * 0.02562 * 21 20 19 23 23 Cl 1.73609 * 120.02184 * 180.10465 * 22 21 20 24 24 C 1.38198 * 119.95951 * 0.09004 * 22 21 20 25 25 C 1.38363 * 121.79105 * 342.59467 * 19 18 17 26 26 C 1.50774 * 121.40507 * 0.81661 * 25 19 18 27 27 H 0.96995 * 119.99382 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47102 * 59.99668 * 9 7 2 29 29 H 1.08996 * 109.46759 * 299.99409 * 9 7 2 30 30 H 1.09001 * 109.46547 * 59.99746 * 10 9 7 31 31 H 1.08995 * 109.47279 * 300.00499 * 10 9 7 32 32 H 1.09001 * 109.47320 * 60.00591 * 11 10 9 33 33 H 1.09000 * 109.47519 * 300.00175 * 11 10 9 34 34 H 1.08997 * 109.67549 * 55.90300 * 17 15 13 35 35 H 1.09001 * 109.71088 * 295.37113 * 17 15 13 36 36 H 1.07996 * 119.88753 * 359.52127 * 20 19 18 37 37 H 1.07999 * 120.02511 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.84907 * 179.97438 * 24 22 21 39 39 H 1.08998 * 109.42877 * 101.99555 * 26 25 19 40 40 H 1.08998 * 109.43961 * 221.86556 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5514 -2.6368 -0.0001 12 8 6.0354 -4.0058 -0.0009 13 6 7.3661 -4.1817 -0.0005 14 8 8.1022 -3.2235 0.0000 15 6 7.9420 -5.5743 -0.0006 16 1 7.6166 -6.1064 -0.8945 17 6 7.4719 -6.3284 1.2499 18 8 7.9480 -7.6726 1.1709 19 6 9.2613 -7.8652 0.8808 20 6 9.8248 -9.1087 1.1492 21 6 11.1527 -9.3466 0.8601 22 6 11.9282 -8.3456 0.3017 23 17 13.5986 -8.6436 -0.0654 24 6 11.3719 -7.1087 0.0362 25 6 10.0394 -6.8649 0.3254 26 6 9.4710 -5.5000 0.0300 27 1 -0.4849 0.8401 0.0004 28 1 3.8745 -0.6809 0.8905 29 1 3.8752 -0.6799 -0.8895 30 1 3.6584 -3.1503 -0.8903 31 1 3.6578 -3.1508 0.8896 32 1 5.9149 -2.1231 0.8899 33 1 5.9148 -2.1229 -0.8900 34 1 6.3827 -6.3265 1.2918 35 1 7.8744 -5.8482 2.1418 36 1 9.2208 -9.8903 1.5856 37 1 11.5868 -10.3129 1.0702 38 1 11.9788 -6.3286 -0.3992 39 1 9.7854 -4.8009 0.8049 40 1 9.8365 -5.1565 -0.9377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914619712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:20 Heat of formation + Delta-G solvation = -141.127759 kcal Electronic energy + Delta-G solvation = -23749.192170 eV Core-core repulsion = 19939.709475 eV Total energy + Delta-G solvation = -3809.482696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27551 -41.23313 -38.87342 -38.02674 -37.20230 -35.95000 -35.49063 -33.87802 -32.11513 -31.17659 -29.48571 -26.96823 -26.20470 -24.66886 -23.79384 -22.54384 -22.06695 -20.88368 -19.15575 -18.99129 -18.89980 -18.03325 -17.65811 -17.29062 -16.99533 -16.29864 -16.13258 -15.84314 -15.38011 -15.04756 -14.94683 -14.82191 -14.58643 -14.43203 -14.15633 -13.88336 -13.77457 -13.53873 -13.34186 -12.86874 -12.61619 -12.59751 -12.28950 -12.19482 -12.04624 -11.89170 -11.79932 -11.75476 -11.67481 -11.42793 -11.38104 -11.35167 -10.77743 -9.97041 -9.18373 -8.30392 -6.35374 0.09461 0.15496 0.98016 1.14173 1.36732 1.38177 1.47058 1.49831 2.13299 2.35279 2.51872 3.04861 3.20922 3.33823 3.45656 3.67384 3.75004 3.94099 4.00485 4.01172 4.07657 4.27773 4.33977 4.37834 4.44225 4.46746 4.73502 4.74369 4.75785 4.77948 4.89168 4.93205 4.96055 5.18582 5.20908 5.29761 5.47992 5.49049 5.50456 5.62262 6.23744 6.25453 6.56149 6.72919 7.29160 8.86054 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.037487 B = 0.001893 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.740368 B =14785.334325 C =15411.464027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.074 3.926 12 O -0.354 6.354 13 C 0.472 3.528 14 O -0.527 6.527 15 C -0.112 4.112 16 H 0.138 0.862 17 C 0.072 3.928 18 O -0.309 6.309 19 C 0.118 3.882 20 C -0.135 4.135 21 C -0.075 4.075 22 C -0.074 4.074 23 Cl -0.071 7.071 24 C -0.077 4.077 25 C -0.149 4.149 26 C -0.061 4.061 27 H 0.267 0.733 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.455 -19.556 1.735 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.048 4.048 10 C -0.131 4.131 11 C 0.001 3.999 12 O -0.270 6.270 13 C 0.316 3.684 14 O -0.417 6.417 15 C -0.131 4.131 16 H 0.156 0.844 17 C -0.003 4.003 18 O -0.222 6.222 19 C 0.073 3.927 20 C -0.154 4.154 21 C -0.094 4.094 22 C -0.100 4.100 23 Cl -0.042 7.042 24 C -0.096 4.096 25 C -0.150 4.150 26 C -0.098 4.098 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.164 0.836 39 H 0.108 0.892 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 27.491 -19.298 1.745 33.633 hybrid contribution -0.102 1.275 -0.225 1.299 sum 27.389 -18.023 1.520 32.822 Atomic orbital electron populations 1.70064 1.08288 1.28221 1.52394 1.26015 0.95641 1.03542 0.94093 0.85667 0.79563 0.78237 0.79258 1.19153 1.21019 1.16825 1.21415 0.91777 0.93326 1.50670 0.94595 1.19456 0.94242 0.93860 0.97213 1.21326 0.90776 0.98280 1.02725 1.23229 0.95108 0.78804 1.02746 1.86482 1.23996 1.33431 1.83121 1.23581 0.80737 0.92312 0.71806 1.90676 1.60948 1.43873 1.46163 1.21740 0.97097 0.90133 1.04114 0.84407 1.23077 1.02181 0.79723 0.95309 1.86094 1.21831 1.28711 1.85575 1.19051 0.83549 0.94778 0.95353 1.20795 0.94892 0.96147 1.03539 1.21099 0.92409 0.99439 0.96437 1.20859 0.86595 0.96198 1.06375 1.98374 1.16248 1.96091 1.93463 1.20903 0.93816 0.96179 0.98673 1.19682 0.94632 0.96130 1.04556 1.20372 0.90904 0.93396 1.05078 0.92438 0.95563 0.95780 0.91844 0.91602 0.90809 0.90990 0.84593 0.90158 0.82468 0.82192 0.83575 0.89157 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.95 43.37 27.47 68.60 1.88 45.25 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.53 -30.15 9.66 25.60 0.25 -29.91 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.43 5.53 30.59 0.17 -3.26 16 11 C 0.07 2.26 5.47 71.98 0.39 2.65 16 12 O -0.35 -9.46 10.08 -51.35 -0.52 -9.97 16 13 C 0.47 11.17 7.26 71.24 0.52 11.69 16 14 O -0.53 -15.22 15.55 21.96 0.34 -14.88 16 15 C -0.11 -1.87 2.87 -11.37 -0.03 -1.90 16 16 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.07 1.10 6.28 72.12 0.45 1.56 16 18 O -0.31 -5.25 10.27 -92.10 -0.95 -6.19 16 19 C 0.12 1.91 6.47 22.51 0.15 2.06 16 20 C -0.14 -1.78 9.93 22.42 0.22 -1.56 16 21 C -0.08 -0.90 9.83 22.24 0.22 -0.68 16 22 C -0.07 -1.03 6.32 22.30 0.14 -0.89 16 23 Cl -0.07 -0.96 28.96 -2.72 -0.08 -1.04 16 24 C -0.08 -1.12 9.45 22.33 0.21 -0.90 16 25 C -0.15 -2.33 5.75 -19.75 -0.11 -2.44 16 26 C -0.06 -0.95 4.65 29.91 0.14 -0.81 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 29 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 32 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 33 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 34 H 0.14 1.89 8.05 -2.39 -0.02 1.87 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.09 1.53 7.72 -2.39 -0.02 1.52 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.15 354.00 5.27 -61.88 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.99 Total: 7.62 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.30 Total: -24.04 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.30 Total: -58.63 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.12 Total: -31.05 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -67.15 5.27 -61.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.243 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds