Wall clock time and date at job start Tue Mar 31 2020 13:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21293 * 120.00345 * 2 1 4 4 C 1.46793 * 119.99825 * 179.97438 * 2 1 3 5 5 C 1.40012 * 120.22224 * 0.02562 * 4 2 1 6 6 C 1.37673 * 119.88240 * 179.97438 * 5 4 2 7 7 C 1.38635 * 120.33597 * 359.97438 * 6 5 4 8 8 C 1.38050 * 120.45286 * 0.02562 * 7 6 5 9 9 C 1.38683 * 120.11330 * 359.97438 * 8 7 6 10 10 O 1.35601 * 120.17278 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99687 * 359.96090 * 10 9 8 12 12 C 1.53001 * 109.47161 * 179.97438 * 11 10 9 13 13 O 1.45204 * 109.46931 * 65.00058 * 12 11 10 14 14 C 1.34226 * 116.99883 * 179.97438 * 13 12 11 15 15 O 1.20830 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99742 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47111 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00045 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99959 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99890 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99910 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00010 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47119 * 89.99584 * 22 20 18 24 24 H 1.48498 * 109.47365 * 210.00025 * 22 20 18 25 25 H 1.48501 * 109.47310 * 329.99803 * 22 20 18 26 26 H 1.09005 * 109.47344 * 270.00310 * 1 2 3 27 27 H 1.08998 * 109.47307 * 29.99710 * 1 2 3 28 28 H 1.08998 * 109.47341 * 150.00066 * 1 2 3 29 29 H 1.08006 * 120.06526 * 359.94996 * 5 4 2 30 30 H 1.08000 * 119.83508 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.76892 * 179.74631 * 7 6 5 32 32 H 1.07999 * 119.94057 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.47110 * 300.00217 * 11 10 9 34 34 H 1.09000 * 109.47284 * 59.99932 * 11 10 9 35 35 H 1.08994 * 109.46935 * 184.99973 * 12 11 10 36 36 H 1.09000 * 109.46885 * 305.00255 * 12 11 10 37 37 H 1.09003 * 109.47360 * 300.00211 * 16 14 13 38 38 H 1.08998 * 109.47275 * 60.00008 * 16 14 13 39 39 H 0.96993 * 119.99764 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5455 -2.4865 0.0006 6 6 2.2409 -3.6747 0.0006 7 6 3.6272 -3.6747 0.0000 8 6 4.3269 -2.4846 0.0000 9 6 3.6453 -1.2768 0.0000 10 8 4.3313 -0.1071 -0.0005 11 6 5.7578 -0.1917 -0.0002 12 6 6.3523 1.2181 -0.0015 13 8 6.0071 1.8901 1.2385 14 6 6.4561 3.1451 1.3969 15 8 7.1154 3.6651 0.5281 16 6 6.1379 3.9054 2.6585 17 16 6.8771 5.5554 2.5711 18 6 6.3622 6.2040 4.1263 19 1 5.7681 5.5979 4.7942 20 6 6.7203 7.4940 4.4931 21 7 6.3353 7.9788 5.6547 22 14 7.7473 8.5425 3.3376 23 1 6.8503 9.3131 2.4394 24 1 8.5803 9.4821 4.1303 25 1 8.6278 7.6658 2.5244 26 1 -0.3634 0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.4655 -2.4919 0.0010 30 1 1.7037 -4.6116 0.0010 31 1 4.1635 -4.6121 0.0042 32 1 5.4068 -2.4942 0.0000 33 1 6.0899 -0.7257 0.8901 34 1 6.0903 -0.7267 -0.8898 35 1 7.4368 1.1549 -0.0908 36 1 5.9505 1.7810 -0.8440 37 1 5.0570 3.9971 2.7646 38 1 6.5432 3.3704 3.5172 39 1 6.5858 8.8800 5.9112 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:29 Heat of formation + Delta-G solvation = -132.282255 kcal Electronic energy + Delta-G solvation = -23784.170899 eV Core-core repulsion = 19977.115480 eV Total energy + Delta-G solvation = -3807.055419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86566 -40.06510 -38.81751 -37.74377 -36.17910 -32.45747 -32.41256 -31.64404 -30.12374 -29.68126 -29.02323 -25.65395 -24.51635 -23.68863 -22.10087 -21.05134 -20.17334 -18.63325 -17.95636 -17.35451 -16.83260 -16.51772 -16.32722 -15.98762 -15.56616 -15.17231 -14.99681 -14.94988 -14.87724 -14.36327 -14.02227 -13.81597 -13.50710 -13.04759 -12.84136 -12.75606 -12.55828 -12.25483 -12.19813 -12.14802 -11.87616 -11.61343 -11.33383 -11.27962 -11.02127 -10.69567 -10.56095 -10.13275 -9.84460 -9.76430 -9.47204 -9.02018 -8.62548 -8.57447 -6.97949 -6.30051 -4.03711 0.36832 0.99326 2.24207 2.43896 2.58619 2.75423 3.12314 3.32502 3.40381 3.48240 3.55172 3.81869 4.26058 4.31282 4.40741 4.55797 4.60313 4.67377 4.74066 4.79159 4.87888 4.90384 4.99560 5.08679 5.10953 5.13736 5.18816 5.33623 5.43646 5.51035 5.64574 5.72631 5.78943 5.92000 6.00699 6.02990 6.26510 6.58656 7.01277 7.49573 7.93008 8.08035 8.42069 9.15087 10.79087 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.002427 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.041075 B =11532.408474 C =12274.204952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.384 3.616 3 O -0.431 6.431 4 C -0.207 4.207 5 C -0.037 4.037 6 C -0.176 4.176 7 C -0.048 4.048 8 C -0.227 4.227 9 C 0.188 3.812 10 O -0.274 6.274 11 C 0.055 3.945 12 C 0.069 3.931 13 O -0.350 6.350 14 C 0.481 3.519 15 O -0.492 6.492 16 C -0.099 4.099 17 S -0.140 6.140 18 C -0.521 4.521 19 H 0.091 0.909 20 C 0.097 3.903 21 N -0.878 5.878 22 Si 0.857 3.143 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.236 1.236 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.681 -27.425 -13.217 31.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.260 3.740 3 O -0.304 6.304 4 C -0.208 4.208 5 C -0.055 4.055 6 C -0.194 4.194 7 C -0.066 4.066 8 C -0.245 4.245 9 C 0.140 3.860 10 O -0.185 6.185 11 C -0.020 4.020 12 C -0.005 4.005 13 O -0.268 6.268 14 C 0.323 3.677 15 O -0.378 6.378 16 C -0.247 4.247 17 S 0.086 5.914 18 C -0.668 4.668 19 H 0.109 0.891 20 C -0.112 4.112 21 N -0.514 5.514 22 Si 0.681 3.319 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.160 1.160 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.597 -25.867 -14.191 30.466 hybrid contribution -0.157 -0.358 0.636 0.746 sum -7.754 -26.225 -13.555 30.523 Atomic orbital electron populations 1.22222 0.93971 1.04612 1.04687 1.22204 0.91409 0.87538 0.72809 1.90673 1.71655 1.33695 1.34398 1.20056 0.90806 0.96183 1.13780 1.21342 1.00104 0.90625 0.93436 1.21022 0.94253 0.98237 1.05917 1.21183 0.94370 0.97552 0.93480 1.21303 1.00738 0.91949 1.10547 1.19328 0.90990 0.85285 0.90435 1.86389 1.19174 1.26882 1.86092 1.23046 0.79073 0.97153 1.02714 1.22964 0.99982 0.91007 0.86547 1.86569 1.71530 1.28655 1.40006 1.23250 0.76149 0.79519 0.88810 1.90660 1.36075 1.68193 1.42905 1.23000 1.06624 0.99894 0.95143 1.84762 1.70406 1.07833 1.28408 1.22271 1.39957 1.03246 1.01374 0.89052 1.24699 0.94927 0.96656 0.94959 1.69932 1.44200 1.17069 1.20195 0.86739 0.81742 0.81774 0.81601 1.19118 1.19830 1.15971 0.88595 0.89416 0.89932 0.84347 0.85287 0.85310 0.84795 0.90388 0.89577 0.88832 0.89886 0.87070 0.87191 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 9.75 36.00 0.35 -1.05 16 2 C 0.38 4.48 7.22 -30.85 -0.22 4.25 16 3 O -0.43 -7.14 15.91 -16.36 -0.26 -7.40 16 4 C -0.21 -2.13 5.88 -104.94 -0.62 -2.75 16 5 C -0.04 -0.25 9.36 -39.12 -0.37 -0.62 16 6 C -0.18 -1.05 10.02 -39.64 -0.40 -1.45 16 7 C -0.05 -0.30 10.03 -39.50 -0.40 -0.70 16 8 C -0.23 -1.84 9.03 -39.49 -0.36 -2.20 16 9 C 0.19 2.09 6.71 -38.59 -0.26 1.84 16 10 O -0.27 -3.66 8.18 -43.94 -0.36 -4.01 16 11 C 0.06 0.55 5.13 37.16 0.19 0.74 16 12 C 0.07 0.88 5.85 37.16 0.22 1.10 16 13 O -0.35 -5.84 10.19 -42.01 -0.43 -6.27 16 14 C 0.48 9.38 7.97 36.00 0.29 9.67 16 15 O -0.49 -10.64 15.61 -18.75 -0.29 -10.93 16 16 C -0.10 -2.05 6.27 36.00 0.23 -1.83 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 18 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 19 H 0.09 2.78 8.03 -52.48 -0.42 2.36 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 22 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.35 6.47 -51.93 -0.34 0.01 16 29 H 0.14 0.53 6.36 -52.48 -0.33 0.20 16 30 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 31 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 33 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 34 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 36 H 0.08 1.12 8.13 -51.93 -0.42 0.69 16 37 H 0.11 2.24 8.14 -51.91 -0.42 1.82 16 38 H 0.11 2.11 8.14 -51.92 -0.42 1.69 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -37.09 355.58 -7.80 -44.89 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.75 Total: -2.15 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.13 Total: -5.13 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.78 Total: -25.86 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.34 Total: -28.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.09 -7.80 -44.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.396 kcal (2) G-P(sol) polarization free energy of solvation -37.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds